Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008848

Physical Location & Seq

Genomic Coordinates Reverse (-)

25791389 .. 25799578

Gene Structure 8190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g23770.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGATTCTTACCCTAATTTGGGGTTCTGTTGTTGCTTTTGGTAGCTCCGACCTCTCGGATTCTCAAACTTTACCAAATCCAGAAAATGAGAAACCCTTCAGTTTAACTGGTTCTGGTGTAAGAACTGATGTCGAAACCCGAGATACTGCAAGAATCATGATGCTCTCGTTGATCCCATATCTCATTCTTCAGCTGGCAAAAATCTTGACTTCAACCACAGCGGTTCGAGTTGTTATTTTAATTTCTCTACTGATTGCATTTGCATTCCTTGCCACTTACTTCATTTACGAGTTCTTTCAACCATGGATTCAGAGCAGAAGGCTTGAATATTTGCTGCGTAAGTACATACCGAAAAACATACTGCCGAGTCTAATGACAGTAGGCGGAAACCCTAATGTATCTATTATAAAAGGGCTGTTCCATAGAATAGACAAGAATCATAACACATACATATCAGCAGATGAACTTAGAGCATTGATCCTAGGAATACAAATAGAAGCAATAGGTCTGGATGATGATGATTATGCAGAAGAAGTGATGAAGCAATTTGATCTCTCTGGCGACGCTCAAATAGCTGAGACGGAGTTTGTGAATGGACTCTCAAAATGGATTAATCCAGATAAGGCCCCTGCCAACGGTAAAGATAATGAACATAGATCGCTTTTCAGAAGAAATAATTCCAAGAATGAGACATCTATGGAAGATCAGCAGACACCGCTGATCTCTAAGAAAAAGAAGACTAGGGGTGCTGATACATCGTGGATGAATCTCCTGAAGGCCGCTTTTCTAATTATTCTAGGAACTGCCATAACGGCTTTTCTTTCAATGCCCCTCATGGTAGGTCTCCAAGAGTTTTCCACTGCTGCAAGCATCCCTTCTTTCACGACCTCGTATGTTGTGATACCCTTGGCTACAAATTACAGAGTGGCGCTAATGTCTGTATCGTCTGCCAAAGAAAAGACGGAGAATGCCATATCTTTAACGCTTTCTGAGATTTACAACGCTGCATTCATGAACAATATTGTGGGGTTGGTCATATTTTTGGCTCTTGTTTACATACGCAATTTATCATGGGATGTGGCTGCTGAAGTTTTAGTTGTTTTAATTATTTCGATAGCGGTTGGTCTTTCTGCAAGCTTCAGCAGAAGGTTCCCATTGTGGACATGCATTCTAGCATACATCCTGTACCCCATATCACTGCTGCTGGTTTATGTTCTTACCATTGTTATCGGATGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_7 Na_Ca_ex

Protein Analysis

414

Amino Acids

45.99

Weight (kDa)

6.36

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08180 FvH4_3g08181 FvH4_3g08181
malus_domestica	MD05G1305500.v1.1 MD10G1284700.v1.1 MD10G1284800.v1.1 MD10G1284900.v1.1
prunus_persica	Prupe.4G056800_v2.0.a1
pyrus_communis	pycom05g28280 pycom10g23770 pycom10g23790 pycom10g23800 pycom10g23810
rosa_chinensis	RchiOBHm_Chr5g0010001
rosa_laevigata	RLG00000031718
rosa_roxburghii	Rroxscaffold_1G00066160
rosa_rugosa	Rorug04G0448600 Rorug04G0448700
rosa_samantha	Rh5AG079300 Rh5BG074100 Rh5CG086700 Rh5DG074800
rosa_wichuraiana	Rw5G007340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
AciI	CCGC	5 cut(s)	221, 384, 716, 780, 1118
AclWI	GGATC	2 cut(s)	166, 472
AcuI	CTGAAG	5 cut(s)	82, 173, 794, 1107, 1123
AfaI	GTAC	2 cut(s)	344, 1187
AfiI	CCNNNNNNNGG	3 cut(s)	18, 19, 635
AgsI	TTSAA	4 cut(s)	213, 299, 326, 825
AluBI	AGCT	4 cut(s)	45, 193, 575, 1137
AluI	AGCT	4 cut(s)	45, 193, 575, 1137
Alw26I	GTCTC	3 cut(s)	572, 683, 848
AlwI	GGATC	2 cut(s)	166, 472
Ama87I	CYCGRG	1 cut(s)	138
AoxI	GGCC	2 cut(s)	624, 777
ApeKI	GCWGC	5 cut(s)	334, 863, 1004, 1082, 1201
AseI	ATTAAT	1 cut(s)	612
Asp700I	GAANNNNTTC	2 cut(s)	95, 676
AspA2I	CCTAGG	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	931
AspS9I	GGNCC	1 cut(s)	625
AvaI	CYCGRG	1 cut(s)	138
AvrII	CCTAGG	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	743
BbvI	GCAGC	5 cut(s)	321, 850, 991, 1069, 1188
BccI	CCATC	1 cut(s)	1227
BceAI	ACGGC	1 cut(s)	828
BcoDI	GTCTC	3 cut(s)	572, 683, 848
BfaI	CTAG	4 cut(s)	482, 741, 797, 1172
BfoI	RGCGCY	1 cut(s)	932
BglI	GCCNNNNNGGC	1 cut(s)	812
BisI	GCNGC	6 cut(s)	335, 780, 864, 1005, 1083, 1202
BlnI	CCTAGG	1 cut(s)	481
BlsI	GCNGC	6 cut(s)	336, 781, 865, 1006, 1084, 1203
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	625
BmiI	GGNNCC	2 cut(s)	627, 1151
BmsI	GCATC	2 cut(s)	150, 879
BpiI	GAAGAC	1 cut(s)	743
BsaI	GGTCTC	1 cut(s)	848
BsaJI	CCNNGG	3 cut(s)	302, 481, 906
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 19, 635
Bse1I	ACTGG	1 cut(s)	112
BseDI	CCNNGG	3 cut(s)	302, 481, 906
BseGI	GGATG	6 cut(s)	517, 768, 870, 1081, 1179, 1238
BseLI	CCNNNNNNNGG	3 cut(s)	18, 19, 635
BseMII	CTCAG	2 cut(s)	567, 981
BseNI	ACTGG	1 cut(s)	112
BseXI	GCAGC	5 cut(s)	321, 850, 991, 1069, 1188
BshFI	GGCC	2 cut(s)	626, 779
BsiHKCI	CYCGRG	1 cut(s)	138
BslI	CCNNNNNNNGG	3 cut(s)	18, 19, 635
BsmAI	GTCTC	3 cut(s)	572, 683, 848
BsmBI	CGTCTC	1 cut(s)	572
BsmI	GAATGC	4 cut(s)	263, 973, 1007, 1167
BsnI	GGCC	2 cut(s)	626, 779
Bso31I	GGTCTC	1 cut(s)	848
BsoBI	CYCGRG	1 cut(s)	138
Bsp143I	GATC	6 cut(s)	171, 477, 550, 656, 703, 720
Bsp19I	CCATGG	1 cut(s)	302
BspACI	CCGC	5 cut(s)	221, 384, 716, 780, 1118
BspANI	GGCC	2 cut(s)	626, 779
BspCNI	CTCAG	2 cut(s)	568, 982
BspHI	TCATGA	2 cut(s)	156, 1011
BspLI	GGNNCC	2 cut(s)	627, 1151
BspPI	GGATC	2 cut(s)	166, 472
BspTNI	GGTCTC	1 cut(s)	848
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	3 cut(s)	302, 481, 906
BssMI	GATC	6 cut(s)	171, 477, 550, 656, 703, 720
BssT1I	CCWWGG	3 cut(s)	302, 481, 906
Bst4CI	ACNGT	2 cut(s)	379, 638
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	3 cut(s)	195, 868, 1135
BstDEI	CTNAG	4 cut(s)	467, 576, 726, 990
BstDSI	CCRYGG	1 cut(s)	302
BstF5I	GGATG	6 cut(s)	517, 768, 870, 1081, 1179, 1238
BstH2I	RGCGCY	1 cut(s)	932
BstHHI	GCGC	1 cut(s)	931
BstKTI	GATC	6 cut(s)	174, 480, 553, 659, 706, 723
BstMAI	GTCTC	3 cut(s)	572, 683, 848
BstMBI	GATC	6 cut(s)	171, 477, 550, 656, 703, 720
BstMWI	GCNNNNNNNGC	4 cut(s)	269, 572, 715, 812
BstNSI	RCATGY	1 cut(s)	1167
BstV1I	GCAGC	5 cut(s)	321, 850, 991, 1069, 1188
BstV2I	GAAGAC	1 cut(s)	743
BsuRI	GGCC	2 cut(s)	626, 779
BtgI	CCRYGG	1 cut(s)	302
BtsCI	GGATG	6 cut(s)	517, 768, 870, 1081, 1179, 1238
BtsI	GCAGTG	2 cut(s)	858, 1196
BtsIMutI	CAGTG	2 cut(s)	858, 1196
Cac8I	GCNNGC	3 cut(s)	195, 868, 1135
CciI	TCATGA	2 cut(s)	156, 1011
CfoI	GCGC	1 cut(s)	931
Cfr13I	GGNCC	1 cut(s)	625
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	2 cut(s)	343, 1186
CviAII	CATG	6 cut(s)	157, 303, 835, 1012, 1071, 1164
CviQI	GTAC	2 cut(s)	343, 1186
DdeI	CTNAG	4 cut(s)	467, 576, 726, 990
DpnI	GATC	6 cut(s)	173, 479, 552, 658, 705, 722
DpnII	GATC	6 cut(s)	171, 477, 550, 656, 703, 720
EciI	GGCGGA	1 cut(s)	399
Eco130I	CCWWGG	3 cut(s)	302, 481, 906
Eco31I	GGTCTC	1 cut(s)	848
Eco57I	CTGAAG	5 cut(s)	82, 173, 794, 1107, 1123
Eco88I	CYCGRG	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	625
EcoT14I	CCWWGG	3 cut(s)	302, 481, 906
EcoT22I	ATGCAT	1 cut(s)	1169
ErhI	CCWWGG	3 cut(s)	302, 481, 906
Esp3I	CGTCTC	1 cut(s)	572
FaeI	CATG	6 cut(s)	160, 306, 838, 1015, 1074, 1167
FalI	AAGNNNNNCTT	2 cut(s)	859, 891
FatI	CATG	6 cut(s)	156, 302, 834, 1011, 1070, 1163
Fnu4HI	GCNGC	6 cut(s)	335, 780, 864, 1005, 1083, 1202
FokI	GGATG	5 cut(s)	524, 775, 857, 1088, 1166
Fsp4HI	GCNGC	6 cut(s)	335, 780, 864, 1005, 1083, 1202
FspBI	CTAG	4 cut(s)	482, 741, 797, 1172
GlaI	GCGC	1 cut(s)	930
GluI	GCNGC	6 cut(s)	335, 780, 864, 1005, 1083, 1202
HaeII	RGCGCY	1 cut(s)	932
HaeIII	GGCC	2 cut(s)	626, 779
HgaI	GACGC	1 cut(s)	572
HhaI	GCGC	1 cut(s)	931
Hin1II	CATG	6 cut(s)	160, 306, 838, 1015, 1074, 1167
Hin6I	GCGC	1 cut(s)	929
HinP1I	GCGC	1 cut(s)	929
HindIII	AAGCTT	1 cut(s)	1135
HinfI	GANTC	8 cut(s)	4, 59, 153, 307, 367, 436, 597, 766
Hpy166II	GTNNAC	2 cut(s)	1054, 1161
Hpy188I	TCNGA	6 cut(s)	49, 58, 312, 668, 991, 1232
Hpy188III	TCNNGA	8 cut(s)	80, 157, 205, 509, 617, 772, 883, 1012
Hpy8I	GTNNAC	2 cut(s)	1054, 1161
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	5 cut(s)	106, 312, 769, 885, 1140
HpyCH4III	ACNGT	2 cut(s)	379, 638
HpyCH4V	TGCA	8 cut(s)	149, 257, 263, 527, 866, 1007, 1133, 1167
HpyF10VI	GCNNNNNNNGC	4 cut(s)	269, 572, 715, 812
HpyF3I	CTNAG	4 cut(s)	467, 576, 726, 990
Hsp92II	CATG	6 cut(s)	160, 306, 838, 1015, 1074, 1167
HspAI	GCGC	1 cut(s)	929
Kzo9I	GATC	6 cut(s)	171, 477, 550, 656, 703, 720
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	5 cut(s)	321, 850, 991, 1069, 1188
LweI	GCATC	2 cut(s)	150, 879
MaeI	CTAG	4 cut(s)	482, 741, 797, 1172
MalI	GATC	6 cut(s)	173, 479, 552, 658, 705, 722
MboI	GATC	6 cut(s)	171, 477, 550, 656, 703, 720
MboII	GAAGA	5 cut(s)	179, 542, 681, 713, 748
MluCI	AATT	8 cut(s)	15, 240, 545, 676, 789, 916, 1063, 1104
MlyI	GAGTC	2 cut(s)	376, 591
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	3 cut(s)	62, 842, 898
Mph1103I	ATGCAT	1 cut(s)	1169
MroXI	GAANNNNTTC	2 cut(s)	95, 676
MseI	TTAA	6 cut(s)	104, 239, 612, 980, 1103, 1240
MspA1I	CMGCKG	3 cut(s)	193, 221, 718
Mva1269I	GAATGC	4 cut(s)	263, 973, 1007, 1167
MwoI	GCNNNNNNNGC	4 cut(s)	269, 572, 715, 812
NcoI	CCATGG	1 cut(s)	302
NdeII	GATC	6 cut(s)	171, 477, 550, 656, 703, 720
NlaIII	CATG	6 cut(s)	160, 306, 838, 1015, 1074, 1167
NlaIV	GGNNCC	2 cut(s)	627, 1151
NmeAIII	GCCGAG	1 cut(s)	390
NsiI	ATGCAT	1 cut(s)	1169
NspI	RCATGY	1 cut(s)	1167
PagI	TCATGA	2 cut(s)	156, 1011
PctI	GAATGC	4 cut(s)	263, 973, 1007, 1167
PdmI	GAANNNNTTC	2 cut(s)	95, 676
PfeI	GAWTC	6 cut(s)	4, 59, 153, 307, 436, 766
PkrI	GCNGC	6 cut(s)	336, 781, 865, 1006, 1084, 1203
PleI	GAGTC	2 cut(s)	375, 591
PpsI	GAGTC	2 cut(s)	375, 591
PshBI	ATTAAT	1 cut(s)	612
PsiI	TTATAA	1 cut(s)	407
PspN4I	GGNNCC	2 cut(s)	627, 1151
PspPI	GGNCC	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	2 cut(s)	344, 1187
RsaNI	GTAC	2 cut(s)	343, 1186
SaqAI	TTAA	6 cut(s)	104, 239, 612, 980, 1103, 1240
SatI	GCNGC	6 cut(s)	335, 780, 864, 1005, 1083, 1202
Sau3AI	GATC	6 cut(s)	171, 477, 550, 656, 703, 720
Sau96I	GGNCC	1 cut(s)	625
SchI	GAGTC	2 cut(s)	376, 591
SetI	ASST	9 cut(s)	47, 54, 195, 508, 577, 844, 890, 1139, 1151
SfaNI	GCATC	2 cut(s)	150, 879
Sse9I	AATT	8 cut(s)	15, 240, 545, 676, 789, 916, 1063, 1104
SsiI	CCGC	5 cut(s)	221, 384, 716, 780, 1118
SspI	AATATT	2 cut(s)	329, 1021
SspMI	CTAG	4 cut(s)	482, 741, 797, 1172
StyI	CCWWGG	3 cut(s)	302, 481, 906
TaaI	ACNGT	2 cut(s)	379, 638
TaqI	TCGA	3 cut(s)	132, 226, 1112
TasI	AATT	8 cut(s)	15, 240, 545, 676, 789, 916, 1063, 1104
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	1 cut(s)	782
TfiI	GAWTC	6 cut(s)	4, 59, 153, 307, 436, 766
Tru1I	TTAA	6 cut(s)	104, 239, 612, 980, 1103, 1240
Tru9I	TTAA	6 cut(s)	104, 239, 612, 980, 1103, 1240
TscAI	CASTG	2 cut(s)	865, 1203
TseI	GCWGC	5 cut(s)	334, 863, 1004, 1082, 1201
TspDTI	ATGAA	7 cut(s)	271, 477, 554, 663, 779, 1000, 1028
TspGWI	ACGGA	2 cut(s)	596, 977
TspRI	CASTG	2 cut(s)	865, 1203
VspI	ATTAAT	1 cut(s)	612
XceI	RCATGY	1 cut(s)	1167
XmaJI	CCTAGG	1 cut(s)	481
XmnI	GAANNNNTTC	2 cut(s)	95, 676
XspI	CTAG	4 cut(s)	482, 741, 797, 1172
Zsp2I	ATGCAT	1 cut(s)	1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.