Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008667

Physical Location & Seq

Genomic Coordinates Forward (+)

3811520 .. 3814074

Gene Structure 2555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G078400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAAGTTACAGAGCCACAGCCACAGCGCAATGGCATGCAATGACAGCAGGCTGTTTAGACTTGGAGGGCAAGAAATAAGTAGGAACCCTCCTCTGCCTCTCACTCTCAGGAAATCTCCTCGCCGTCTCTGCACTGTTCAATGCTCCCACAGCAACCATAGCCTTCCCTACCCTCCTTCTCTTTCCATAATCAAATCCACAAGCAAAGTGTTCTCTGCAATCTCCAACTCTCTCCCCAATATCATGTCTTTTCTCACCTCTGATTCCACCAAGATGGAAGGGAGTGACTTTACAGAGGAAGTTACTGAAGCAACTGAAATCTATATCAACGCCATTGGAAAAAAGAAGATTTTTGTGGCCGGTGCCACTGGAAGTACCGGCAAAAGAATTGTTGAGCGGCTACTGGCTAAAGGTTTTCGAGTTAAAGCTGGAGTTCGAGACTTGGACAAAGCCAAAACTATCCTTCCCCAAGACAACCCAGCTCTTCAAATTGTGAAAGCTGATGTGACAGAGGGTTCTGCCAAGCTAGCAGATGCAATAAGTGACGATTCAGAAGCAGTAATTTGTGCCACGGGATGTCGCTCTGGATGGGATTTGTATGCTCCATGGAAGGTTGATAATTTGGGCACCGTCAACCTTGTAGATGCTTGCCGGAAACTTGGTGTGAAAAGGTTTATCCTTGTGAGTTCCCTTTTAGTCAATGGAGCAGCAATGGGGCAGATACTCAACCCAGCTTACATCTTTCTTAATGTTTTTGGACTGACCTTAATTGCAAAGCTTCGGGCAGAGGATTATATTAGGGAGTCTGGTATGAACTATACGATTATAAGGCCTGGTGGGTTGAGAAATGAGCCTCCAACAGGAAATCTTGTGATGGAGCCAGAGGACACTCTCTACGAAGGCACAATCTCCAGGGATCAGGTTGCAGAAGTAGCTATTGCAGCATTAGTTCGTCCCCAAGCATCTTACAAGGTTGTAGAGATAGTTGCACGTGCCGATGCCCCCAAGCGTTCATATGGGGATCTTTTTAGTTCTATCACGCAACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

350

Amino Acids

37.96

Weight (kDa)

9.13

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34460
fragaria_vesca	FvH4_3g05850 FvH4_3g05850 FvH4_3g05850
malus_domestica	MD05G1286400.v1.1 MD05G1286500.v1.1 MD10G1264000.v1.1
prunus_persica	Prupe.4G078400_v2.0.a1 Prupe.4G078500_v2.0.a1
pyrus_communis	pycom05g26490 pycom10g22010
rosa_chinensis	RchiOBHm_Chr5g0013671 RchiOBHm_Chr6g0254821
rosa_laevigata	RLG00000009678 RLG00000032039
rosa_roxburghii	Rroxscaffold_1G00062930
rosa_rugosa	Rorug05G0011900 Rorug05G0012000
rosa_samantha	Rh5AG106400 Rh5BG102600 Rh5CG114500 Rh5DG101300
rosa_wichuraiana	Rw5G009280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	827
AccB1I	GGYRCC	2 cut(s)	362, 626
AccBSI	CCGCTC	1 cut(s)	397
AciI	CCGC	1 cut(s)	397
AclWI	GGATC	2 cut(s)	924, 1029
AcoI	YGGCCR	1 cut(s)	357
AcuI	CTGAAG	1 cut(s)	327
AcvI	CACGTG	1 cut(s)	992
AfaI	GTAC	1 cut(s)	376
AfiI	CCNNNNNNNGG	1 cut(s)	860
AgsI	TTSAA	2 cut(s)	140, 488
AjnI	CCWGG	2 cut(s)	832, 911
AluBI	AGCT	7 cut(s)	428, 482, 500, 526, 734, 778, 935
AluI	AGCT	7 cut(s)	428, 482, 500, 526, 734, 778, 935
Alw26I	GTCTC	2 cut(s)	131, 432
AlwI	GGATC	2 cut(s)	924, 1029
AoxI	GGCC	2 cut(s)	357, 830
ApeKI	GCWGC	2 cut(s)	707, 941
AspLEI	GCGC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	247
AsuNHI	GCTAGC	1 cut(s)	526
BaeGI	GKGCMC	1 cut(s)	629
BanI	GGYRCC	2 cut(s)	362, 626
BbrPI	CACGTG	1 cut(s)	992
BbvI	GCAGC	2 cut(s)	719, 953
BccI	CCATC	3 cut(s)	268, 582, 868
BceAI	ACGGC	1 cut(s)	108
BciT130I	CCWGG	2 cut(s)	834, 913
BcoDI	GTCTC	2 cut(s)	131, 432
BfaI	CTAG	1 cut(s)	527
BisI	GCNGC	3 cut(s)	398, 708, 942
BlsI	GCNGC	3 cut(s)	399, 709, 943
Bme1390I	CCNGG	2 cut(s)	834, 913
BmiI	GGNNCC	4 cut(s)	86, 364, 628, 879
BmrFI	CCNGG	2 cut(s)	834, 913
BmsI	GCATC	4 cut(s)	523, 634, 971, 988
BmtI	GCTAGC	1 cut(s)	530
BpmI	CTGGAG	2 cut(s)	450, 895
BsaAI	YACGTR	1 cut(s)	992
BsaJI	CCNNGG	3 cut(s)	570, 605, 912
Bsc4I	CCNNNNNNNGG	1 cut(s)	860
Bse118I	RCCGGY	2 cut(s)	359, 377
Bse1I	ACTGG	2 cut(s)	373, 408
Bse3DI	GCAATG	3 cut(s)	36, 46, 717
BseBI	CCWGG	2 cut(s)	834, 913
BseDI	CCNNGG	3 cut(s)	570, 605, 912
BseGI	GGATG	2 cut(s)	581, 593
BseLI	CCNNNNNNNGG	1 cut(s)	860
BseMI	GCAATG	3 cut(s)	36, 46, 717
BseMII	CTCAG	1 cut(s)	121
BseNI	ACTGG	2 cut(s)	373, 408
BseRI	GAGGAG	2 cut(s)	81, 108
BseSI	GKGCMC	1 cut(s)	629
BseXI	GCAGC	2 cut(s)	719, 953
BseYI	CCCAGC	2 cut(s)	478, 730
BsgI	GTGCAG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	359, 832
BshNI	GGYRCC	2 cut(s)	362, 626
BsiSI	CCGG	3 cut(s)	360, 378, 652
BslFI	GGGAC	1 cut(s)	939
BslI	CCNNNNNNNGG	1 cut(s)	860
BsmAI	GTCTC	2 cut(s)	131, 432
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	939
BsnI	GGCC	2 cut(s)	359, 832
Bsp1286I	GDGCHC	1 cut(s)	629
Bsp143I	GATC	2 cut(s)	916, 1021
Bsp19I	CCATGG	1 cut(s)	605
BspACI	CCGC	1 cut(s)	397
BspANI	GGCC	2 cut(s)	359, 832
BspCNI	CTCAG	1 cut(s)	120
BspLI	GGNNCC	4 cut(s)	86, 364, 628, 879
BspOI	GCTAGC	1 cut(s)	530
BspPI	GGATC	2 cut(s)	924, 1029
BspQI	GCTCTTC	1 cut(s)	489
BspT107I	GGYRCC	2 cut(s)	362, 626
BsrBI	CCGCTC	1 cut(s)	397
BsrDI	GCAATG	3 cut(s)	36, 46, 717
BsrFI	RCCGGY	2 cut(s)	359, 377
BsrI	ACTGG	2 cut(s)	373, 408
BssAI	RCCGGY	2 cut(s)	359, 377
BssECI	CCNNGG	3 cut(s)	570, 605, 912
BssMI	GATC	2 cut(s)	916, 1021
BssT1I	CCWWGG	1 cut(s)	605
Bst2UI	CCWGG	2 cut(s)	834, 913
Bst4CI	ACNGT	3 cut(s)	136, 631, 1047
Bst6I	CTCTTC	1 cut(s)	489
BstBAI	YACGTR	1 cut(s)	992
BstC8I	GCNNGC	4 cut(s)	37, 50, 528, 649
BstDEI	CTNAG	1 cut(s)	107
BstDSI	CCRYGG	2 cut(s)	570, 605
BstENI	CCTNNNNNAGG	1 cut(s)	858
BstF5I	GGATG	2 cut(s)	581, 593
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	2 cut(s)	919, 1024
BstMAI	GTCTC	2 cut(s)	131, 432
BstMBI	GATC	2 cut(s)	916, 1021
BstMWI	GCNNNNNNNGC	7 cut(s)	45, 129, 150, 159, 527, 932, 941
BstNI	CCWGG	2 cut(s)	834, 913
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	2 cut(s)	832, 911
BstSLI	GKGCMC	1 cut(s)	629
BstV1I	GCAGC	2 cut(s)	719, 953
BstX2I	RGATCY	1 cut(s)	1021
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	1021
BsuRI	GGCC	2 cut(s)	359, 832
BtgI	CCRYGG	2 cut(s)	570, 605
BtsCI	GGATG	2 cut(s)	581, 593
BtsIMutI	CAGTG	2 cut(s)	132, 366
Cac8I	GCNNGC	4 cut(s)	37, 50, 528, 649
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	2 cut(s)	359, 377
Csp6I	GTAC	1 cut(s)	375
CviAII	CATG	3 cut(s)	36, 244, 606
CviQI	GTAC	1 cut(s)	375
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	2 cut(s)	918, 1023
DpnII	GATC	2 cut(s)	916, 1021
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
Eco130I	CCWWGG	1 cut(s)	605
Eco147I	AGGCCT	1 cut(s)	832
Eco57I	CTGAAG	1 cut(s)	327
Eco72I	CACGTG	1 cut(s)	992
EcoNI	CCTNNNNNAGG	1 cut(s)	858
EcoRII	CCWGG	2 cut(s)	832, 911
EcoT14I	CCWWGG	1 cut(s)	605
ErhI	CCWWGG	1 cut(s)	605
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	3 cut(s)	39, 247, 609
FaqI	GGGAC	1 cut(s)	939
FatI	CATG	3 cut(s)	35, 243, 605
FauNDI	CATATG	1 cut(s)	1015
Fnu4HI	GCNGC	3 cut(s)	398, 708, 942
FokI	GGATG	2 cut(s)	588, 600
Fsp4HI	GCNGC	3 cut(s)	398, 708, 942
FspBI	CTAG	1 cut(s)	527
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	3 cut(s)	398, 708, 942
GsaI	CCCAGC	2 cut(s)	482, 734
GsuI	CTGGAG	2 cut(s)	450, 895
HaeIII	GGCC	2 cut(s)	359, 832
HapII	CCGG	3 cut(s)	360, 378, 652
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	3 cut(s)	39, 247, 609
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	1 cut(s)	776
HinfI	GANTC	3 cut(s)	263, 548, 803
HpaII	CCGG	3 cut(s)	360, 378, 652
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	2 cut(s)	262, 553
Hpy188III	TCNNGA	3 cut(s)	109, 437, 585
Hpy8I	GTNNAC	1 cut(s)	634
HpyAV	CCTTC	6 cut(s)	173, 186, 272, 473, 604, 893
HpyCH4III	ACNGT	3 cut(s)	136, 631, 1047
HpyCH4IV	ACGT	1 cut(s)	991
HpyCH4V	TGCA	8 cut(s)	39, 132, 218, 536, 773, 926, 941, 989
HpyF10VI	GCNNNNNNNGC	7 cut(s)	45, 129, 150, 159, 527, 932, 941
HpyF3I	CTNAG	1 cut(s)	107
HpySE526I	ACGT	1 cut(s)	991
Hsp92II	CATG	3 cut(s)	39, 247, 609
HspAI	GCGC	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	916, 1021
LguI	GCTCTTC	1 cut(s)	489
LmnI	GCTCC	4 cut(s)	149, 607, 704, 877
Lsp1109I	GCAGC	2 cut(s)	719, 953
LweI	GCATC	4 cut(s)	523, 634, 971, 988
MaeI	CTAG	1 cut(s)	527
MaeII	ACGT	1 cut(s)	991
MaeIII	GTNAC	5 cut(s)	6, 284, 301, 505, 542
MalI	GATC	2 cut(s)	918, 1023
MbiI	CCGCTC	1 cut(s)	397
MboI	GATC	2 cut(s)	916, 1021
MboII	GAAGA	2 cut(s)	358, 476
MflI	RGATCY	1 cut(s)	1021
MhlI	GDGCHC	1 cut(s)	629
MluCI	AATT	5 cut(s)	387, 489, 561, 619, 768
MlyI	GAGTC	1 cut(s)	812
MmeI	TCCRAC	2 cut(s)	249, 881
MseI	TTAA	3 cut(s)	423, 747, 767
MslI	CAYNNNNRTG	1 cut(s)	272
MspI	CCGG	3 cut(s)	360, 378, 652
MspR9I	CCNGG	2 cut(s)	834, 913
MvaI	CCWGG	2 cut(s)	834, 913
MwoI	GCNNNNNNNGC	7 cut(s)	45, 129, 150, 159, 527, 932, 941
NcoI	CCATGG	1 cut(s)	605
NdeI	CATATG	1 cut(s)	1015
NdeII	GATC	2 cut(s)	916, 1021
NheI	GCTAGC	1 cut(s)	526
NlaIII	CATG	3 cut(s)	39, 247, 609
NlaIV	GGNNCC	4 cut(s)	86, 364, 628, 879
NmuCI	GTSAC	3 cut(s)	284, 505, 542
NspI	RCATGY	1 cut(s)	39
PaeI	GCATGC	1 cut(s)	39
PceI	AGGCCT	1 cut(s)	832
PciSI	GCTCTTC	1 cut(s)	489
PfeI	GAWTC	2 cut(s)	263, 548
PkrI	GCNGC	3 cut(s)	399, 709, 943
PleI	GAGTC	1 cut(s)	811
PmaCI	CACGTG	1 cut(s)	992
PmlI	CACGTG	1 cut(s)	992
PpsI	GAGTC	1 cut(s)	811
Ppu21I	YACGTR	1 cut(s)	992
PsiI	TTATAA	1 cut(s)	827
Psp6I	CCWGG	2 cut(s)	832, 911
PspCI	CACGTG	1 cut(s)	992
PspFI	CCCAGC	2 cut(s)	478, 730
PspGI	CCWGG	2 cut(s)	832, 911
PspN4I	GGNNCC	4 cut(s)	86, 364, 628, 879
PsuI	RGATCY	1 cut(s)	1021
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
RseI	CAYNNNNRTG	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	489
SaqAI	TTAA	3 cut(s)	423, 747, 767
SatI	GCNGC	3 cut(s)	398, 708, 942
Sau3AI	GATC	2 cut(s)	916, 1021
SchI	GAGTC	1 cut(s)	812
ScrFI	CCNGG	2 cut(s)	834, 913
SduI	GDGCHC	1 cut(s)	629
SfaNI	GCATC	4 cut(s)	523, 634, 971, 988
SmiMI	CAYNNNNRTG	1 cut(s)	272
SphI	GCATGC	1 cut(s)	39
Sse9I	AATT	5 cut(s)	387, 489, 561, 619, 768
SseBI	AGGCCT	1 cut(s)	832
SsiI	CCGC	1 cut(s)	397
SspMI	CTAG	1 cut(s)	527
StuI	AGGCCT	1 cut(s)	832
StyD4I	CCNGG	2 cut(s)	832, 911
StyI	CCWWGG	1 cut(s)	605
TaaI	ACNGT	3 cut(s)	136, 631, 1047
TaiI	ACGT	1 cut(s)	994
TaqI	TCGA	2 cut(s)	418, 436
TasI	AATT	5 cut(s)	387, 489, 561, 619, 768
TauI	GCSGC	1 cut(s)	400
TfiI	GAWTC	2 cut(s)	263, 548
Tru1I	TTAA	3 cut(s)	423, 747, 767
Tru9I	TTAA	3 cut(s)	423, 747, 767
TscAI	CASTG	2 cut(s)	139, 373
TseFI	GTSAC	3 cut(s)	284, 505, 542
TseI	GCWGC	2 cut(s)	707, 941
Tsp45I	GTSAC	3 cut(s)	284, 505, 542
TspDTI	ATGAA	3 cut(s)	17, 827, 1002
TspRI	CASTG	2 cut(s)	139, 373
XagI	CCTNNNNNAGG	1 cut(s)	858
XceI	RCATGY	1 cut(s)	39
XspI	CTAG	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.