Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008667

Physical Location & Seq

Genomic Coordinates Forward (+)

3814272 .. 3817371

Gene Structure 3100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G078500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCAGCTCCTCTGCCTCTCATTTTCAGGAACCCTCCTCTCCGTCTCTGCACTCACCATCTTCTCTACCCTCCTCTTTCCATAGCCAAAACCTCAACCAATCCTTACTCTCTAATTTCCTACTCTCCCACCAACACCAGGTCCTTTCCCATCCTTAATTCCACTCAGATGGAAGGGGATGAAATTACAGAGGAAATTACTGAGACAACTCAAACCAATGTAGTTGGGAAGAAGAAAGTTTTTGTAGCTGGTGCCACTGGAAATACTGGTAAAAGAATTGTTGAGCAGCTACTGGCTAAGGGGTTTGCAGTTAAAGCTGGAGTTCGAAACGTGGAGAAAGCCAAAGCTAGCCTTCCCCAAGACAACCCAGCTCTTCAAATTGTGAAAGCAGATGTGACAGAGGGTTCTGCCAAGCTAGCAGAAGCAATAAGTGATGATTCAGACGCAGTCATTTGTGCCACAGGATTTAGCTATGGATGGGATTTGTTTGCTCCATGGAAGGTTGATAATTTTGGCACAGTCAACCTTGTTGAAGCGTGCCGTAAACTTGGTGTGAACAGGTTTATTCTTGTCAGTTCCATCTTAGTCAACGGAGCAGCAATGGGGCAGATTCTCAATCCAGCTTACATATTCCTTAATGTTTTTGGACTGACCTTAATAGCAAAGCTTCAGGCAGAGCAATATATCAGGAAATCTGGTATAAACTATACAATAATAAGGCCTGGGGGGTTGAAAAATGATCCTCCCACAGGAAACCTTGTGATGGAGCCAGAGGACACTCTTTCTGATGGCAGTATCTCCAGAGATCTGGTTGCAGAAGTAGCTATAGAGGCATTAGTAAATCCTGAAGCATCTTACAAGGTTGTGGAGATTGTTTCGCGTCCTGATGCCCCGAAGCGTTCATATGAGGATCTTTTTGGCTCCATCAAGCAACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

313

Amino Acids

33.81

Weight (kDa)

6.76

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34460
fragaria_vesca	FvH4_3g05850 FvH4_3g05850 FvH4_3g05850
malus_domestica	MD05G1286400.v1.1 MD05G1286500.v1.1 MD10G1264000.v1.1
prunus_persica	Prupe.4G078400_v2.0.a1 Prupe.4G078500_v2.0.a1
pyrus_communis	pycom05g26490 pycom10g22010
rosa_chinensis	RchiOBHm_Chr5g0013671 RchiOBHm_Chr6g0254821
rosa_laevigata	RLG00000009678 RLG00000032039
rosa_roxburghii	Rroxscaffold_1G00062930
rosa_rugosa	Rorug05G0011900 Rorug05G0012000
rosa_samantha	Rh5AG106400 Rh5BG102600 Rh5CG114500 Rh5DG101300
rosa_wichuraiana	Rw5G009280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AccII	CGCG	1 cut(s)	880
AclWI	GGATC	2 cut(s)	734, 918
AcuI	CTGAAG	2 cut(s)	653, 867
AfiI	CCNNNNNNNGG	3 cut(s)	138, 749, 763
AgsI	TTSAA	3 cut(s)	377, 533, 733
AjnI	CCWGG	2 cut(s)	137, 721
Alw26I	GTCTC	2 cut(s)	50, 197
AlwI	GGATC	2 cut(s)	734, 918
AlwNI	CAGNNNCTG	1 cut(s)	292
AoxI	GGCC	1 cut(s)	719
ApeKI	GCWGC	3 cut(s)	5, 286, 596
AspS9I	GGNCC	1 cut(s)	141
AsuHPI	GGTGA	1 cut(s)	47
AsuII	TTCGAA	1 cut(s)	325
AsuNHI	GCTAGC	2 cut(s)	347, 415
AvaII	GGWCC	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	251
BbvI	GCAGC	3 cut(s)	17, 298, 608
BccI	CCATC	8 cut(s)	66, 158, 163, 471, 587, 757, 782, 932
BceAI	ACGGC	1 cut(s)	525
BciT130I	CCWGG	2 cut(s)	139, 723
BcoDI	GTCTC	2 cut(s)	50, 197
BfaI	CTAG	2 cut(s)	348, 416
BfmI	CTRYAG	1 cut(s)	825
BglII	AGATCT	1 cut(s)	805
BisI	GCNGC	3 cut(s)	6, 287, 597
BlsI	GCNGC	3 cut(s)	7, 288, 598
Bme1390I	CCNGG	2 cut(s)	139, 723
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	4 cut(s)	32, 253, 768, 922
BmrFI	CCNGG	2 cut(s)	139, 723
BmsI	GCATC	2 cut(s)	860, 877
BmtI	GCTAGC	2 cut(s)	351, 419
BpmI	CTGGAG	2 cut(s)	339, 784
Bpu10I	CCTNAGC	1 cut(s)	297
Bpu14I	TTCGAA	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	494, 722
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 749, 763
Bse1I	ACTGG	3 cut(s)	262, 271, 297
Bse3DI	GCAATG	1 cut(s)	606
BseBI	CCWGG	2 cut(s)	139, 723
BseDI	CCNNGG	2 cut(s)	494, 722
BseGI	GGATG	3 cut(s)	150, 184, 482
BseLI	CCNNNNNNNGG	3 cut(s)	138, 749, 763
BseMI	GCAATG	1 cut(s)	606
BseMII	CTCAG	2 cut(s)	179, 192
BseNI	ACTGG	3 cut(s)	262, 271, 297
BseRI	GAGGAG	2 cut(s)	27, 63
BseXI	GCAGC	3 cut(s)	17, 298, 608
BseYI	CCCAGC	1 cut(s)	367
BsgI	GTGCAG	1 cut(s)	34
Bsh1236I	CGCG	1 cut(s)	880
BshFI	GGCC	1 cut(s)	721
BshNI	GGYRCC	1 cut(s)	251
BslI	CCNNNNNNNGG	3 cut(s)	138, 749, 763
BsmAI	GTCTC	2 cut(s)	50, 197
BsmBI	CGTCTC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	721
Bsp119I	TTCGAA	1 cut(s)	325
Bsp143I	GATC	3 cut(s)	739, 805, 910
Bsp19I	CCATGG	1 cut(s)	494
BspANI	GGCC	1 cut(s)	721
BspCNI	CTCAG	2 cut(s)	178, 193
BspFNI	CGCG	1 cut(s)	880
BspLI	GGNNCC	4 cut(s)	32, 253, 768, 922
BspOI	GCTAGC	2 cut(s)	351, 419
BspPI	GGATC	2 cut(s)	734, 918
BspQI	GCTCTTC	1 cut(s)	378
BspT104I	TTCGAA	1 cut(s)	325
BspT107I	GGYRCC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	606
BsrI	ACTGG	3 cut(s)	262, 271, 297
BssECI	CCNNGG	2 cut(s)	494, 722
BssMI	GATC	3 cut(s)	739, 805, 910
BssT1I	CCWWGG	1 cut(s)	494
Bst2UI	CCWGG	2 cut(s)	139, 723
Bst4CI	ACNGT	2 cut(s)	520, 936
Bst6I	CTCTTC	1 cut(s)	378
BstBI	TTCGAA	1 cut(s)	325
BstC8I	GCNNGC	3 cut(s)	349, 417, 538
BstDEI	CTNAG	4 cut(s)	165, 201, 297, 583
BstDSI	CCRYGG	1 cut(s)	494
BstENI	CCTNNNNNAGG	1 cut(s)	747
BstF5I	GGATG	3 cut(s)	150, 184, 482
BstFNI	CGCG	1 cut(s)	880
BstKTI	GATC	3 cut(s)	742, 808, 913
BstMAI	GTCTC	2 cut(s)	50, 197
BstMBI	GATC	3 cut(s)	739, 805, 910
BstMWI	GCNNNNNNNGC	4 cut(s)	314, 416, 821, 830
BstNI	CCWGG	2 cut(s)	139, 723
BstSCI	CCNGG	2 cut(s)	137, 721
BstSFI	CTRYAG	1 cut(s)	825
BstUI	CGCG	1 cut(s)	880
BstV1I	GCAGC	3 cut(s)	17, 298, 608
BstX2I	RGATCY	2 cut(s)	805, 910
BstXI	CCANNNNNNTGG	2 cut(s)	169, 808
BstYI	RGATCY	2 cut(s)	805, 910
BsuRI	GGCC	1 cut(s)	721
BtgI	CCRYGG	1 cut(s)	494
BtsCI	GGATG	3 cut(s)	150, 184, 482
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	3 cut(s)	349, 417, 538
CaiI	CAGNNNCTG	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	141
CseI	GACGC	2 cut(s)	452, 869
CsiI	ACCWGGT	1 cut(s)	137
CviAII	CATG	1 cut(s)	495
DdeI	CTNAG	4 cut(s)	165, 201, 297, 583
DpnI	GATC	3 cut(s)	741, 807, 912
DpnII	GATC	3 cut(s)	739, 805, 910
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	494
Eco147I	AGGCCT	1 cut(s)	721
Eco47I	GGWCC	1 cut(s)	141
Eco57I	CTGAAG	2 cut(s)	653, 867
EcoNI	CCTNNNNNAGG	1 cut(s)	747
EcoO109I	RGGNCCY	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	137, 721
EcoT14I	CCWWGG	1 cut(s)	494
ErhI	CCWWGG	1 cut(s)	494
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	1 cut(s)	498
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FatI	CATG	1 cut(s)	494
FauNDI	CATATG	1 cut(s)	904
Fnu4HI	GCNGC	3 cut(s)	6, 287, 597
FokI	GGATG	3 cut(s)	137, 191, 489
Fsp4HI	GCNGC	3 cut(s)	6, 287, 597
FspBI	CTAG	2 cut(s)	348, 416
GluI	GCNGC	3 cut(s)	6, 287, 597
GsaI	CCCAGC	1 cut(s)	371
GsuI	CTGGAG	2 cut(s)	339, 784
HaeIII	GGCC	1 cut(s)	721
HgaI	GACGC	2 cut(s)	452, 869
Hin1II	CATG	1 cut(s)	498
HincII	GTYRAC	2 cut(s)	523, 589
HindII	GTYRAC	2 cut(s)	523, 589
HindIII	AAGCTT	1 cut(s)	665
HinfI	GANTC	2 cut(s)	437, 610
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	4 cut(s)	523, 545, 556, 589
Hpy188I	TCNGA	3 cut(s)	168, 442, 787
Hpy188III	TCNNGA	5 cut(s)	28, 688, 801, 845, 884
Hpy8I	GTNNAC	4 cut(s)	523, 545, 556, 589
HpyAV	CCTTC	3 cut(s)	167, 362, 493
HpyCH4III	ACNGT	2 cut(s)	520, 936
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	3 cut(s)	51, 308, 815
HpyF10VI	GCNNNNNNNGC	4 cut(s)	314, 416, 821, 830
HpyF3I	CTNAG	4 cut(s)	165, 201, 297, 583
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	1 cut(s)	498
Kzo9I	GATC	3 cut(s)	739, 805, 910
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	5 cut(s)	13, 496, 593, 766, 926
Lsp1109I	GCAGC	3 cut(s)	17, 298, 608
LweI	GCATC	2 cut(s)	860, 877
MabI	ACCWGGT	1 cut(s)	137
MaeI	CTAG	2 cut(s)	348, 416
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	3 cut(s)	741, 807, 912
MboI	GATC	3 cut(s)	739, 805, 910
MboII	GAAGA	4 cut(s)	53, 241, 244, 365
MflI	RGATCY	2 cut(s)	805, 910
MluCI	AATT	7 cut(s)	114, 157, 183, 195, 276, 378, 508
MseI	TTAA	4 cut(s)	156, 312, 636, 656
MslI	CAYNNNNRTG	1 cut(s)	167
MspR9I	CCNGG	2 cut(s)	139, 723
MvaI	CCWGG	2 cut(s)	139, 723
MvnI	CGCG	1 cut(s)	880
MwoI	GCNNNNNNNGC	4 cut(s)	314, 416, 821, 830
NcoI	CCATGG	1 cut(s)	494
NdeI	CATATG	1 cut(s)	904
NdeII	GATC	3 cut(s)	739, 805, 910
NheI	GCTAGC	2 cut(s)	347, 415
NlaIII	CATG	1 cut(s)	498
NlaIV	GGNNCC	4 cut(s)	32, 253, 768, 922
NmuCI	GTSAC	1 cut(s)	394
NspV	TTCGAA	1 cut(s)	325
PceI	AGGCCT	1 cut(s)	721
PciSI	GCTCTTC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	437, 610
PflFI	GACNNNGTC	1 cut(s)	446
PkrI	GCNGC	3 cut(s)	7, 288, 598
PpuMI	RGGWCCY	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	137, 721
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	2 cut(s)	137, 721
PspN4I	GGNNCC	4 cut(s)	32, 253, 768, 922
PspPI	GGNCC	1 cut(s)	141
PspPPI	RGGWCCY	1 cut(s)	141
PstNI	CAGNNNCTG	1 cut(s)	292
PsuI	RGATCY	2 cut(s)	805, 910
PsyI	GACNNNGTC	1 cut(s)	446
RseI	CAYNNNNRTG	1 cut(s)	167
SapI	GCTCTTC	1 cut(s)	378
SaqAI	TTAA	4 cut(s)	156, 312, 636, 656
SatI	GCNGC	3 cut(s)	6, 287, 597
Sau3AI	GATC	3 cut(s)	739, 805, 910
Sau96I	GGNCC	1 cut(s)	141
ScrFI	CCNGG	2 cut(s)	139, 723
SexAI	ACCWGGT	1 cut(s)	137
SfaNI	GCATC	2 cut(s)	860, 877
SfcI	CTRYAG	1 cut(s)	825
SfuI	TTCGAA	1 cut(s)	325
SinI	GGWCC	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	7 cut(s)	114, 157, 183, 195, 276, 378, 508
SseBI	AGGCCT	1 cut(s)	721
SspMI	CTAG	2 cut(s)	348, 416
StuI	AGGCCT	1 cut(s)	721
StyD4I	CCNGG	2 cut(s)	137, 721
StyI	CCWWGG	1 cut(s)	494
TaaI	ACNGT	2 cut(s)	520, 936
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	1 cut(s)	325
TasI	AATT	7 cut(s)	114, 157, 183, 195, 276, 378, 508
TfiI	GAWTC	2 cut(s)	437, 610
Tru1I	TTAA	4 cut(s)	156, 312, 636, 656
Tru9I	TTAA	4 cut(s)	156, 312, 636, 656
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	3 cut(s)	5, 286, 596
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	2 cut(s)	195, 891
TspGWI	ACGGA	2 cut(s)	32, 606
TspRI	CASTG	1 cut(s)	262
Tth111I	GACNNNGTC	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	141
XagI	CCTNNNNNAGG	1 cut(s)	747
XspI	CTAG	2 cut(s)	348, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.