Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008667

Physical Location & Seq

Genomic Coordinates Forward (+)

10376086 .. 10379061

Gene Structure 2976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032039

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGCAGCTCCGCTGCCTCTCATTCTCAGAAACCCTTCTTCTCTCTTAGCTCCGATCCCGACGAACCCTCCTCTCCGTCTTACCAACACTCACTCCCACAGCCACCACTACTCCCCTCTCTCCACAACCAAACCCTTTTCCGTCATTTCACTCTCCTCCTCCTCCACCACCACCAGGCCCTTATTCCCCATCCTTAACTCCTCTAAGATGGAAGGAAGTGAAACCACTGGGAATGAAATCACAGAGGAAGTTACTGAGACCACAACTGAAGCAACAAGTGTGAATGGTTTGAAGAAGATTTTTGTGGCTGGTGCTACTGGGAGCACTGGTAAAAGAATTGTTGAGCAGTTACTGGCTAGGGGTTATGGGGTAAAAGCCGGAGTTCGGGACTTGGAAAAAGCCAAAACTAGTCTTCCAAGCAACAACCCAGCTCTTGAAATTGTGAAAGCAGATGTGACAGAGGGTTCTGCGAAGTTGGCAGAAGCAATTAGTAGTGATTCGGAAGCTGTGATTTGCGCAACGGGGTTTAGCTATGGATGGGATGTGTTTGCTCCATGGAAGGTTGATAATTTTGGGACAGTTAACCTTGTCGATGCATGCCGTAAAGTTGGTGTGAAGAGGTTTATTCTGGTCAGTTCCATTTTAGTCAATGGAGCATCAATGGGGCAGATTCTCAATCCGGCTTACATTTTTCTTAATATATTTGGACTCACTTTAATCGCAAAGCTTCAGGCAGAGAATTATATCAGGAAGTCTGGTATAAACTACACAATAATAAGGCCTGGTGGGTTGAGAAATGAACCTCCAACAGGGAATCTTGTGATGGAGCCAGAGGACACTCTATCTGGAGGCACCATCTCCAGAGATCTGGTTGCGGAAGTAGCTGTTGAGGCATTGGTCACTCCTGAAGCATCTTACAAGGTAGTTGAGATAGTTTCCAGTGCTGATGCCCCCAAGCGTACATACAAGGAACTATTTGGTTCGGTTAAGCAACGAACCAAGCCAGCAAAGAAGCGATGGCCCCTAGAGCAGCTGGAACACCCAGAGCTGCTGCTCTGCTATCCGTTGGAGCTGGTGCTGGTGCAGGTGCAAAAGCTTAATAGAACCAAGCCAGCAAAGAAGCGATGGCCCCTAGAGCAGCTGGAACACACAAAGCGGCTGCTTTGCTTTCCATTGGAGCTGGTGCAGGTGCAAAATCTTCAGCAGCAACTGTGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

407

Amino Acids

44.42

Weight (kDa)

9.07

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	98 - 259	4.2e-18	NmrA-like family
Epimerase	PF01370	100 - 261	3.7e-12	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	102 - 224	1.7e-08	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10	PF13460	104 - 301	3.5e-45	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34460
fragaria_vesca	FvH4_3g05850 FvH4_3g05850 FvH4_3g05850
malus_domestica	MD05G1286400.v1.1 MD05G1286500.v1.1 MD10G1264000.v1.1
prunus_persica	Prupe.4G078400_v2.0.a1 Prupe.4G078500_v2.0.a1
pyrus_communis	pycom05g26490 pycom10g22010
rosa_chinensis	RchiOBHm_Chr5g0013671 RchiOBHm_Chr6g0254821
rosa_laevigata	RLG00000009678 RLG00000032039
rosa_roxburghii	Rroxscaffold_1G00062930
rosa_rugosa	Rorug05G0011900 Rorug05G0012000
rosa_samantha	Rh5AG106400 Rh5BG102600 Rh5CG114500 Rh5DG101300
rosa_wichuraiana	Rw5G009280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1075, 1177
Acc16I	TGCGCA	1 cut(s)	517
Acc36I	ACCTGC	2 cut(s)	1075, 1177
AccB1I	GGYRCC	1 cut(s)	851
AciI	CCGC	3 cut(s)	11, 875, 1156
AclWI	GGATC	1 cut(s)	49
AcuI	CTGAAG	4 cut(s)	288, 713, 927, 1184
AfaI	GTAC	1 cut(s)	961
AfiI	CCNNNNNNNGG	3 cut(s)	174, 384, 809
AgsI	TTSAA	2 cut(s)	292, 437
AhlI	ACTAGT	1 cut(s)	407
AjnI	CCWGG	2 cut(s)	173, 781
Alw21I	GWGCWC	1 cut(s)	326
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	1 cut(s)	49
AlwNI	CAGNNNCTG	2 cut(s)	352, 1210
AoxI	GGCC	4 cut(s)	176, 779, 1019, 1127
ApeKI	GCWGC	8 cut(s)	5, 13, 1030, 1048, 1051, 1138, 1159, 1204
Asp700I	GAANNNNTTC	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	518
AspS9I	GGNCC	3 cut(s)	177, 1020, 1128
BanI	GGYRCC	1 cut(s)	851
BbsI	GAAGAC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	326
BbvI	GCAGC	7 cut(s)	17, 1035, 1038, 1042, 1146, 1150, 1216
BccI	CCATC	7 cut(s)	197, 202, 531, 817, 863, 1011, 1119
BceAI	ACGGC	1 cut(s)	585
BciT130I	CCWGG	2 cut(s)	175, 783
BcoDI	GTCTC	1 cut(s)	251
BcuI	ACTAGT	1 cut(s)	407
BfaI	CTAG	4 cut(s)	357, 408, 1025, 1133
BfuAI	ACCTGC	2 cut(s)	1075, 1177
BglII	AGATCT	1 cut(s)	865
BisI	GCNGC	9 cut(s)	6, 14, 1031, 1049, 1052, 1139, 1157, 1160, 1205
BlsI	GCNGC	9 cut(s)	7, 15, 1032, 1050, 1053, 1140, 1158, 1161, 1206
Bme1390I	CCNGG	2 cut(s)	175, 783
BmgT120I	GGNCC	3 cut(s)	177, 1020, 1128
BmiI	GGNNCC	4 cut(s)	828, 853, 1022, 1130
BmrFI	CCNGG	2 cut(s)	175, 783
BmrI	ACTGGG	2 cut(s)	237, 327
BmsI	GCATC	4 cut(s)	583, 665, 920, 937
BmuI	ACTGGG	2 cut(s)	237, 327
BpiI	GAAGAC	1 cut(s)	404
BpmI	CTGGAG	2 cut(s)	844, 867
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	554
BsaXI	ACNNNNNCTCC	8 cut(s)	52, 77, 82, 95, 107, 125, 313, 343
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 384, 809
Bse1I	ACTGG	5 cut(s)	232, 322, 331, 357, 939
BseBI	CCWGG	2 cut(s)	175, 783
BseDI	CCNNGG	1 cut(s)	554
BseGI	GGATG	3 cut(s)	189, 542, 547
BseLI	CCNNNNNNNGG	3 cut(s)	174, 384, 809
BseMII	CTCAG	2 cut(s)	40, 246
BseNI	ACTGG	5 cut(s)	232, 322, 331, 357, 939
BseRI	GAGGAG	5 cut(s)	60, 145, 148, 151, 190
BseXI	GCAGC	7 cut(s)	17, 1035, 1038, 1042, 1146, 1150, 1216
BseYI	CCCAGC	1 cut(s)	427
BsgI	GTGCAG	2 cut(s)	1103, 1205
BshFI	GGCC	4 cut(s)	178, 781, 1021, 1129
BshNI	GGYRCC	1 cut(s)	851
BsiHKAI	GWGCWC	1 cut(s)	326
BsiSI	CCGG	2 cut(s)	378, 680
BslFI	GGGAC	2 cut(s)	401, 589
BslI	CCNNNNNNNGG	3 cut(s)	174, 384, 809
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	2 cut(s)	401, 589
BsnI	GGCC	4 cut(s)	178, 781, 1021, 1129
Bso31I	GGTCTC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	2 cut(s)	54, 865
Bsp19I	CCATGG	1 cut(s)	554
BspACI	CCGC	3 cut(s)	11, 875, 1156
BspANI	GGCC	4 cut(s)	178, 781, 1021, 1129
BspCNI	CTCAG	2 cut(s)	39, 247
BspLI	GGNNCC	4 cut(s)	828, 853, 1022, 1130
BspMI	ACCTGC	2 cut(s)	1075, 1177
BspPI	GGATC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	851
BspTNI	GGTCTC	1 cut(s)	251
BsrI	ACTGG	5 cut(s)	232, 322, 331, 357, 939
BssECI	CCNNGG	1 cut(s)	554
BssMI	GATC	2 cut(s)	54, 865
BssT1I	CCWWGG	1 cut(s)	554
Bst2UI	CCWGG	2 cut(s)	175, 783
Bst4CI	ACNGT	2 cut(s)	580, 1212
Bst6I	CTCTTC	1 cut(s)	611
BstC8I	GCNNGC	3 cut(s)	598, 1005, 1113
BstDEI	CTNAG	4 cut(s)	26, 46, 204, 255
BstDSI	CCRYGG	1 cut(s)	554
BstENI	CCTNNNNNAGG	1 cut(s)	807
BstF5I	GGATG	3 cut(s)	189, 542, 547
BstHHI	GCGC	1 cut(s)	518
BstKTI	GATC	2 cut(s)	57, 868
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	2 cut(s)	54, 865
BstMWI	GCNNNNNNNGC	6 cut(s)	476, 881, 890, 1027, 1135, 1213
BstNI	CCWGG	2 cut(s)	175, 783
BstNSI	RCATGY	1 cut(s)	600
BstSCI	CCNGG	2 cut(s)	173, 781
BstV1I	GCAGC	7 cut(s)	17, 1035, 1038, 1042, 1146, 1150, 1216
BstV2I	GAAGAC	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	865
BstXI	CCANNNNNNTGG	1 cut(s)	868
BstYI	RGATCY	1 cut(s)	865
BsuRI	GGCC	4 cut(s)	178, 781, 1021, 1129
BtgI	CCRYGG	1 cut(s)	554
BtgZI	GCGATG	2 cut(s)	1030, 1138
BtsCI	GGATG	3 cut(s)	189, 542, 547
BtsIMutI	CAGTG	3 cut(s)	225, 324, 946
BveI	ACCTGC	2 cut(s)	1075, 1177
Cac8I	GCNNGC	3 cut(s)	598, 1005, 1113
CaiI	CAGNNNCTG	2 cut(s)	352, 1210
CfoI	GCGC	1 cut(s)	518
Cfr13I	GGNCC	3 cut(s)	177, 1020, 1128
Csp6I	GTAC	1 cut(s)	960
CviAII	CATG	2 cut(s)	555, 597
CviQI	GTAC	1 cut(s)	960
DdeI	CTNAG	4 cut(s)	26, 46, 204, 255
DpnI	GATC	2 cut(s)	56, 867
DpnII	GATC	2 cut(s)	54, 865
Eam1104I	CTCTTC	1 cut(s)	611
EarI	CTCTTC	1 cut(s)	611
Eco130I	CCWWGG	1 cut(s)	554
Eco147I	AGGCCT	1 cut(s)	781
Eco31I	GGTCTC	1 cut(s)	251
Eco57I	CTGAAG	4 cut(s)	288, 713, 927, 1184
EcoNI	CCTNNNNNAGG	1 cut(s)	807
EcoO109I	RGGNCCY	1 cut(s)	177
EcoRII	CCWGG	2 cut(s)	173, 781
EcoT14I	CCWWGG	1 cut(s)	554
EcoT22I	ATGCAT	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	554
FaeI	CATG	2 cut(s)	558, 600
FaiI	YATR	8 cut(s)	366, 534, 556, 598, 701, 744, 761, 964
FaqI	GGGAC	2 cut(s)	401, 589
FatI	CATG	2 cut(s)	554, 596
Fnu4HI	GCNGC	9 cut(s)	6, 14, 1031, 1049, 1052, 1139, 1157, 1160, 1205
FokI	GGATG	3 cut(s)	176, 549, 554
Fsp4HI	GCNGC	9 cut(s)	6, 14, 1031, 1049, 1052, 1139, 1157, 1160, 1205
FspBI	CTAG	4 cut(s)	357, 408, 1025, 1133
FspI	TGCGCA	1 cut(s)	517
GlaI	GCGC	1 cut(s)	517
GluI	GCNGC	9 cut(s)	6, 14, 1031, 1049, 1052, 1139, 1157, 1160, 1205
GsaI	CCCAGC	1 cut(s)	431
GsuI	CTGGAG	2 cut(s)	844, 867
HaeIII	GGCC	4 cut(s)	178, 781, 1021, 1129
HapII	CCGG	2 cut(s)	378, 680
HhaI	GCGC	1 cut(s)	518
Hin1II	CATG	2 cut(s)	558, 600
Hin6I	GCGC	1 cut(s)	516
HinP1I	GCGC	1 cut(s)	516
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HindIII	AAGCTT	2 cut(s)	725, 1094
HinfI	GANTC	4 cut(s)	497, 670, 708, 814
HpaI	GTTAAC	1 cut(s)	583
HpaII	CCGG	2 cut(s)	378, 680
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	3 cut(s)	29, 54, 502
Hpy188III	TCNNGA	7 cut(s)	58, 386, 434, 748, 846, 861, 905
Hpy8I	GTNNAC	1 cut(s)	583
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	45, 206, 553
HpyCH4III	ACNGT	2 cut(s)	580, 1212
HpyCH4V	TGCA	5 cut(s)	596, 1084, 1090, 1186, 1192
HpyF10VI	GCNNNNNNNGC	6 cut(s)	476, 881, 890, 1027, 1135, 1213
HpyF3I	CTNAG	4 cut(s)	26, 46, 204, 255
Hsp92II	CATG	2 cut(s)	558, 600
HspAI	GCGC	1 cut(s)	516
KspAI	GTTAAC	1 cut(s)	583
Kzo9I	GATC	2 cut(s)	54, 865
LmnI	GCTCC	8 cut(s)	13, 55, 321, 556, 653, 826, 1069, 1177
Lsp1109I	GCAGC	7 cut(s)	17, 1035, 1038, 1042, 1146, 1150, 1216
LweI	GCATC	4 cut(s)	583, 665, 920, 937
MaeI	CTAG	4 cut(s)	357, 408, 1025, 1133
MaeIII	GTNAC	4 cut(s)	250, 348, 454, 898
MalI	GATC	2 cut(s)	56, 867
MboI	GATC	2 cut(s)	54, 865
MboII	GAAGA	6 cut(s)	30, 304, 307, 404, 628, 1190
MflI	RGATCY	1 cut(s)	865
MhlI	GDGCHC	1 cut(s)	326
MluCI	AATT	5 cut(s)	336, 438, 486, 568, 739
MlyI	GAGTC	1 cut(s)	702
MmeI	TCCRAC	2 cut(s)	830, 1047
Mph1103I	ATGCAT	1 cut(s)	598
MroXI	GAANNNNTTC	1 cut(s)	34
MseI	TTAA	6 cut(s)	195, 582, 696, 716, 987, 1098
MspA1I	CMGCKG	3 cut(s)	13, 1033, 1141
MspI	CCGG	2 cut(s)	378, 680
MspR9I	CCNGG	2 cut(s)	175, 783
MvaI	CCWGG	2 cut(s)	175, 783
MwoI	GCNNNNNNNGC	6 cut(s)	476, 881, 890, 1027, 1135, 1213
NcoI	CCATGG	1 cut(s)	554
NdeII	GATC	2 cut(s)	54, 865
NlaIII	CATG	2 cut(s)	558, 600
NlaIV	GGNNCC	4 cut(s)	828, 853, 1022, 1130
NmuCI	GTSAC	2 cut(s)	454, 898
NsbI	TGCGCA	1 cut(s)	517
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	1 cut(s)	600
PaeI	GCATGC	1 cut(s)	600
PaqCI	CACCTGC	2 cut(s)	1075, 1177
PceI	AGGCCT	1 cut(s)	781
PdmI	GAANNNNTTC	1 cut(s)	34
PfeI	GAWTC	3 cut(s)	497, 670, 814
PkrI	GCNGC	9 cut(s)	7, 15, 1032, 1050, 1053, 1140, 1158, 1161, 1206
PleI	GAGTC	1 cut(s)	702
PpsI	GAGTC	1 cut(s)	702
Psp6I	CCWGG	2 cut(s)	173, 781
PspFI	CCCAGC	1 cut(s)	427
PspGI	CCWGG	2 cut(s)	173, 781
PspN4I	GGNNCC	4 cut(s)	828, 853, 1022, 1130
PspPI	GGNCC	3 cut(s)	177, 1020, 1128
PstNI	CAGNNNCTG	2 cut(s)	352, 1210
PsuI	RGATCY	1 cut(s)	865
PvuII	CAGCTG	2 cut(s)	1033, 1141
RsaI	GTAC	1 cut(s)	961
RsaNI	GTAC	1 cut(s)	960
SaqAI	TTAA	6 cut(s)	195, 582, 696, 716, 987, 1098
SatI	GCNGC	9 cut(s)	6, 14, 1031, 1049, 1052, 1139, 1157, 1160, 1205
Sau3AI	GATC	2 cut(s)	54, 865
Sau96I	GGNCC	3 cut(s)	177, 1020, 1128
SchI	GAGTC	1 cut(s)	702
ScrFI	CCNGG	2 cut(s)	175, 783
SduI	GDGCHC	1 cut(s)	326
SfaNI	GCATC	4 cut(s)	583, 665, 920, 937
SpeI	ACTAGT	1 cut(s)	407
SphI	GCATGC	1 cut(s)	600
Sse9I	AATT	5 cut(s)	336, 438, 486, 568, 739
SseBI	AGGCCT	1 cut(s)	781
SsiI	CCGC	3 cut(s)	11, 875, 1156
SspMI	CTAG	4 cut(s)	357, 408, 1025, 1133
StuI	AGGCCT	1 cut(s)	781
StyD4I	CCNGG	2 cut(s)	173, 781
StyI	CCWWGG	1 cut(s)	554
TaaI	ACNGT	2 cut(s)	580, 1212
TaqI	TCGA	1 cut(s)	591
TasI	AATT	5 cut(s)	336, 438, 486, 568, 739
TauI	GCSGC	1 cut(s)	1159
TfiI	GAWTC	3 cut(s)	497, 670, 814
Tru1I	TTAA	6 cut(s)	195, 582, 696, 716, 987, 1098
Tru9I	TTAA	6 cut(s)	195, 582, 696, 716, 987, 1098
TscAI	CASTG	3 cut(s)	232, 331, 946
TseFI	GTSAC	2 cut(s)	454, 898
TseI	GCWGC	8 cut(s)	5, 13, 1030, 1048, 1051, 1138, 1159, 1204
Tsp45I	GTSAC	2 cut(s)	454, 898
TspDTI	ATGAA	2 cut(s)	249, 813
TspGWI	ACGGA	3 cut(s)	65, 130, 1053
TspRI	CASTG	3 cut(s)	232, 331, 946
XagI	CCTNNNNNAGG	1 cut(s)	807
XceI	RCATGY	1 cut(s)	600
XmnI	GAANNNNTTC	1 cut(s)	34
XspI	CTAG	4 cut(s)	357, 408, 1025, 1133
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.