Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008667

Physical Location & Seq

Genomic Coordinates Reverse (-)

24527342 .. 24529223

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g22010.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGGAAGTCAAGACAGGAGAGGGCTGTGTTGGTTGGACTTGGAGCACAAGCAAGGGAGCAAGATAAAGCAAATGGCAGCTCCTCTGCCTTTCATTCTCAGAAACCCTCCTCTACGTCTCTGCACTCACCACCTACTCCCTCCTCTTTCCTACACCACCACCACCGCAACAACCACCGCCAAGCCCTTCTATCTGATTTCCTTCTCTCCCTACAACGCCAGGTCCTTCCCCATCCTAATGTCAACTCAGATGGAAGGGGGTGAAATTACAGAGGAAGTTACGGAGACAACTGAGACCAATGTGATTGGGACGAAGAAAGTATTTGTGGCCGGTGCCACTGGAAATACAGGTAAAAGGATTGTTGAGCAGCTGCTGGCCAAGGGTTTTGCAGTTAAAGCCGGAGTTCGGAACTTGGAGAAAGCGAAAGCTAGCCTTCCCTCAGATAACCCAGCTCTTCAAATTGTGAAGGCAGATGTTACAGATGATTCTGCTAAGTTAGCAGAAGCAATAAGCGACGATTCAGATGCTGTGATTTGTGCCACTGGATTTAGCTATGGATGGGATGTGTTTGCTCCATGGAAGGTTGATAATTTTGGCACAGTGAATCTCGTTGAAGCATGCCGTAAACTTGGTGTGAACCGGTTTATTCTTGTGAGTTCCATCTTGGTCAATGGAGCAGCAATGGGGCAGATTCTCAACCCAGCTTACATATTTCTTAATGTTTTTGGACTCACCTTAATAGCAAAGCTTCAGGCAGAGAATTATATCAGGAAGTCTGGTATAAACTACACGATTATAAGGCCCGGTGGGTTGAAAAGCAACCCTCCAACCGGAAATCTTGTAATGGAGCCAGAGGACACACTTTCGGAAGGCAGCATCTCTAGAGATCTGGTTGCAGAAGTAGCTGTAGAGGCATTAGCGAATCCTGAAGCGTCTTACAAGGTTGTGGAGATAGTTTCGCGGCCTGATGCACCCAAGCGTTCGTATGAGGATCTCTTCGGTTCCATCAAGCAACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010287 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

340

Amino Acids

36.81

Weight (kDa)

7.61

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34460
fragaria_vesca	FvH4_3g05850 FvH4_3g05850 FvH4_3g05850
malus_domestica	MD05G1286400.v1.1 MD05G1286500.v1.1 MD10G1264000.v1.1
prunus_persica	Prupe.4G078400_v2.0.a1 Prupe.4G078500_v2.0.a1
pyrus_communis	pycom05g26490 pycom10g22010
rosa_chinensis	RchiOBHm_Chr5g0013671 RchiOBHm_Chr6g0254821
rosa_laevigata	RLG00000009678 RLG00000032039
rosa_roxburghii	Rroxscaffold_1G00062930
rosa_rugosa	Rorug05G0011900 Rorug05G0012000
rosa_samantha	Rh5AG106400 Rh5BG102600 Rh5CG114500 Rh5DG101300
rosa_wichuraiana	Rw5G009280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	797
AccB1I	GGYRCC	1 cut(s)	332
AccII	CGCG	1 cut(s)	961
AciI	CCGC	3 cut(s)	165, 177, 961
AclWI	GGATC	1 cut(s)	999
AcoI	YGGCCR	2 cut(s)	327, 375
AcuI	CTGAAG	2 cut(s)	734, 948
AfiI	CCNNNNNNNGG	2 cut(s)	405, 830
AgeI	ACCGGT	1 cut(s)	639
AgsI	TTSAA	3 cut(s)	458, 614, 814
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	8 cut(s)	80, 370, 428, 452, 552, 704, 748, 905
AluI	AGCT	8 cut(s)	80, 370, 428, 452, 552, 704, 748, 905
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	3 cut(s)	122, 278, 287
AlwI	GGATC	1 cut(s)	999
AlwNI	CAGNNNCTG	2 cut(s)	373, 527
AoxI	GGCC	4 cut(s)	327, 375, 800, 962
ApeKI	GCWGC	5 cut(s)	77, 367, 370, 677, 873
AsiGI	ACCGGT	1 cut(s)	639
AspS9I	GGNCC	2 cut(s)	222, 801
AsuC2I	CCSGG	1 cut(s)	804
AsuHPI	GGTGA	3 cut(s)	119, 272, 724
AsuNHI	GCTAGC	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	222
BalI	TGGCCA	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	5 cut(s)	89, 357, 379, 689, 885
BccI	CCATC	5 cut(s)	239, 244, 552, 668, 1013
BceAI	ACGGC	1 cut(s)	606
BcgI	CGANNNNNNTGC	2 cut(s)	506, 540
BciT130I	CCWGG	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	804
BcoDI	GTCTC	3 cut(s)	122, 278, 287
BfaI	CTAG	2 cut(s)	429, 882
BfmI	CTRYAG	1 cut(s)	906
BglII	AGATCT	1 cut(s)	886
BisI	GCNGC	6 cut(s)	78, 368, 371, 678, 874, 962
BlsI	GCNGC	6 cut(s)	79, 369, 372, 679, 875, 963
Bme1390I	CCNGG	2 cut(s)	220, 804
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	2 cut(s)	222, 801
BmiI	GGNNCC	3 cut(s)	334, 849, 1003
BmrFI	CCNGG	2 cut(s)	220, 804
BmsI	GCATC	3 cut(s)	514, 885, 958
BmtI	GCTAGC	1 cut(s)	432
BpuMI	CCSGG	1 cut(s)	804
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	378, 575
BsaWI	WCCGGW	2 cut(s)	639, 830
Bsc4I	CCNNNNNNNGG	2 cut(s)	405, 830
Bse118I	RCCGGY	2 cut(s)	329, 639
Bse1I	ACTGG	2 cut(s)	343, 547
Bse3DI	GCAATG	1 cut(s)	687
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	2 cut(s)	378, 575
BseGI	GGATG	3 cut(s)	231, 563, 568
BseLI	CCNNNNNNNGG	2 cut(s)	405, 830
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	4 cut(s)	112, 260, 282, 453
BseNI	ACTGG	2 cut(s)	343, 547
BseRI	GAGGAG	3 cut(s)	72, 99, 132
BseXI	GCAGC	5 cut(s)	89, 357, 379, 689, 885
BseYI	CCCAGC	2 cut(s)	448, 700
BsgI	GTGCAG	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	961
BshFI	GGCC	4 cut(s)	329, 377, 802, 964
BshNI	GGYRCC	1 cut(s)	332
BshTI	ACCGGT	1 cut(s)	639
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	5 cut(s)	330, 399, 640, 804, 831
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	2 cut(s)	405, 830
BsmAI	GTCTC	3 cut(s)	122, 278, 287
BsmBI	CGTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	4 cut(s)	329, 377, 802, 964
Bso31I	GGTCTC	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	886, 991
Bsp19I	CCATGG	1 cut(s)	575
BspACI	CCGC	3 cut(s)	165, 177, 961
BspANI	GGCC	4 cut(s)	329, 377, 802, 964
BspCNI	CTCAG	4 cut(s)	111, 259, 283, 452
BspFNI	CGCG	1 cut(s)	961
BspLI	GGNNCC	3 cut(s)	334, 849, 1003
BspOI	GCTAGC	1 cut(s)	432
BspPI	GGATC	1 cut(s)	999
BspQI	GCTCTTC	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	687
BsrFI	RCCGGY	2 cut(s)	329, 639
BsrI	ACTGG	2 cut(s)	343, 547
BssAI	RCCGGY	2 cut(s)	329, 639
BssECI	CCNNGG	2 cut(s)	378, 575
BssMI	GATC	2 cut(s)	886, 991
BssT1I	CCWWGG	2 cut(s)	378, 575
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	2 cut(s)	601, 1017
Bst6I	CTCTTC	2 cut(s)	459, 1001
BstC8I	GCNNGC	3 cut(s)	375, 430, 619
BstDEI	CTNAG	5 cut(s)	98, 246, 291, 439, 492
BstDSI	CCRYGG	1 cut(s)	575
BstF5I	GGATG	3 cut(s)	231, 563, 568
BstFNI	CGCG	1 cut(s)	961
BstKTI	GATC	2 cut(s)	889, 994
BstMAI	GTCTC	3 cut(s)	122, 278, 287
BstMBI	GATC	2 cut(s)	886, 991
BstMWI	GCNNNNNNNGC	4 cut(s)	395, 497, 902, 911
BstNI	CCWGG	1 cut(s)	220
BstNSI	RCATGY	1 cut(s)	621
BstSCI	CCNGG	2 cut(s)	218, 802
BstSFI	CTRYAG	1 cut(s)	906
BstUI	CGCG	1 cut(s)	961
BstV1I	GCAGC	5 cut(s)	89, 357, 379, 689, 885
BstX2I	RGATCY	2 cut(s)	886, 991
BstYI	RGATCY	2 cut(s)	886, 991
BsuRI	GGCC	4 cut(s)	329, 377, 802, 964
BtgI	CCRYGG	1 cut(s)	575
BtsCI	GGATG	3 cut(s)	231, 563, 568
BtsIMutI	CAGTG	3 cut(s)	336, 540, 606
Cac8I	GCNNGC	3 cut(s)	375, 430, 619
CaiI	CAGNNNCTG	2 cut(s)	373, 527
Cfr10I	RCCGGY	2 cut(s)	329, 639
Cfr13I	GGNCC	2 cut(s)	222, 801
CseI	GACGC	1 cut(s)	921
CspAI	ACCGGT	1 cut(s)	639
CviAII	CATG	2 cut(s)	576, 618
DdeI	CTNAG	5 cut(s)	98, 246, 291, 439, 492
DpnI	GATC	2 cut(s)	888, 993
DpnII	GATC	2 cut(s)	886, 991
EaeI	YGGCCR	2 cut(s)	327, 375
Eam1104I	CTCTTC	2 cut(s)	459, 1001
EarI	CTCTTC	2 cut(s)	459, 1001
Eco130I	CCWWGG	2 cut(s)	378, 575
Eco31I	GGTCTC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	222
Eco57I	CTGAAG	2 cut(s)	734, 948
EcoO109I	RGGNCCY	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	2 cut(s)	378, 575
ErhI	CCWWGG	2 cut(s)	378, 575
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	2 cut(s)	579, 621
FaiI	YATR	8 cut(s)	555, 577, 619, 710, 765, 782, 797, 987
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	2 cut(s)	575, 617
Fnu4HI	GCNGC	6 cut(s)	78, 368, 371, 678, 874, 962
FokI	GGATG	3 cut(s)	218, 570, 575
Fsp4HI	GCNGC	6 cut(s)	78, 368, 371, 678, 874, 962
FspBI	CTAG	2 cut(s)	429, 882
GluI	GCNGC	6 cut(s)	78, 368, 371, 678, 874, 962
GsaI	CCCAGC	2 cut(s)	452, 704
HaeIII	GGCC	4 cut(s)	329, 377, 802, 964
HapII	CCGG	5 cut(s)	330, 399, 640, 804, 831
HgaI	GACGC	1 cut(s)	921
Hin1II	CATG	2 cut(s)	579, 621
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HindIII	AAGCTT	1 cut(s)	746
HinfI	GANTC	6 cut(s)	485, 518, 604, 691, 729, 922
HpaII	CCGG	5 cut(s)	330, 399, 640, 804, 831
HphI	GGTGA	3 cut(s)	119, 272, 724
Hpy166II	GTNNAC	3 cut(s)	243, 626, 637
Hpy188I	TCNGA	7 cut(s)	101, 195, 249, 408, 442, 523, 868
Hpy188III	TCNNGA	4 cut(s)	11, 769, 882, 926
Hpy8I	GTNNAC	3 cut(s)	243, 626, 637
Hpy99I	CGWCG	1 cut(s)	518
HpyAV	CCTTC	8 cut(s)	196, 211, 235, 248, 443, 460, 574, 863
HpyCH4III	ACNGT	2 cut(s)	601, 1017
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	4 cut(s)	123, 389, 896, 971
HpyF10VI	GCNNNNNNNGC	4 cut(s)	395, 497, 902, 911
HpyF3I	CTNAG	5 cut(s)	98, 246, 291, 439, 492
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	2 cut(s)	579, 621
Kzo9I	GATC	2 cut(s)	886, 991
LguI	GCTCTTC	1 cut(s)	459
LmnI	GCTCC	6 cut(s)	43, 57, 85, 577, 674, 847
Lsp1109I	GCAGC	5 cut(s)	89, 357, 379, 689, 885
LweI	GCATC	3 cut(s)	514, 885, 958
MaeI	CTAG	2 cut(s)	429, 882
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	2 cut(s)	277, 475
MalI	GATC	2 cut(s)	888, 993
MboI	GATC	2 cut(s)	886, 991
MboII	GAAGA	3 cut(s)	325, 446, 988
MflI	RGATCY	2 cut(s)	886, 991
MhlI	GDGCHC	1 cut(s)	48
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	4 cut(s)	264, 459, 589, 760
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	1 cut(s)	723
MmeI	TCCRAC	2 cut(s)	15, 851
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	3 cut(s)	393, 717, 737
MslI	CAYNNNNRTG	1 cut(s)	236
Msp20I	TGGCCA	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	370
MspI	CCGG	5 cut(s)	330, 399, 640, 804, 831
MspR9I	CCNGG	2 cut(s)	220, 804
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	961
MwoI	GCNNNNNNNGC	4 cut(s)	395, 497, 902, 911
NciI	CCSGG	1 cut(s)	804
NcoI	CCATGG	1 cut(s)	575
NdeII	GATC	2 cut(s)	886, 991
NheI	GCTAGC	1 cut(s)	428
NlaIII	CATG	2 cut(s)	579, 621
NlaIV	GGNNCC	3 cut(s)	334, 849, 1003
NspI	RCATGY	1 cut(s)	621
PaeI	GCATGC	1 cut(s)	621
PciSI	GCTCTTC	1 cut(s)	459
PfeI	GAWTC	5 cut(s)	485, 518, 604, 691, 922
PinAI	ACCGGT	1 cut(s)	639
PkrI	GCNGC	6 cut(s)	79, 369, 372, 679, 875, 963
PleI	GAGTC	1 cut(s)	723
PpsI	GAGTC	1 cut(s)	723
PpuMI	RGGWCCY	1 cut(s)	222
PsiI	TTATAA	1 cut(s)	797
Psp5II	RGGWCCY	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	218
PspFI	CCCAGC	2 cut(s)	448, 700
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	3 cut(s)	334, 849, 1003
PspPI	GGNCC	2 cut(s)	222, 801
PspPPI	RGGWCCY	1 cut(s)	222
PstNI	CAGNNNCTG	2 cut(s)	373, 527
PsuI	RGATCY	2 cut(s)	886, 991
PvuII	CAGCTG	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	236
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	3 cut(s)	393, 717, 737
SatI	GCNGC	6 cut(s)	78, 368, 371, 678, 874, 962
Sau3AI	GATC	2 cut(s)	886, 991
Sau96I	GGNCC	2 cut(s)	222, 801
SchI	GAGTC	1 cut(s)	723
ScrFI	CCNGG	2 cut(s)	220, 804
SduI	GDGCHC	1 cut(s)	48
SfaNI	GCATC	3 cut(s)	514, 885, 958
SfcI	CTRYAG	1 cut(s)	906
SinI	GGWCC	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	236
SphI	GCATGC	1 cut(s)	621
Sse9I	AATT	4 cut(s)	264, 459, 589, 760
SsiI	CCGC	3 cut(s)	165, 177, 961
SspMI	CTAG	2 cut(s)	429, 882
StyD4I	CCNGG	2 cut(s)	218, 802
StyI	CCWWGG	2 cut(s)	378, 575
TaaI	ACNGT	2 cut(s)	601, 1017
TaiI	ACGT	1 cut(s)	118
TasI	AATT	4 cut(s)	264, 459, 589, 760
TauI	GCSGC	1 cut(s)	964
TfiI	GAWTC	5 cut(s)	485, 518, 604, 691, 922
Tru1I	TTAA	3 cut(s)	393, 717, 737
Tru9I	TTAA	3 cut(s)	393, 717, 737
TscAI	CASTG	3 cut(s)	343, 547, 606
TseI	GCWGC	5 cut(s)	77, 367, 370, 677, 873
TspDTI	ATGAA	1 cut(s)	82
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	3 cut(s)	343, 547, 606
VpaK11BI	GGWCC	1 cut(s)	222
XbaI	TCTAGA	1 cut(s)	881
XceI	RCATGY	1 cut(s)	621
XspI	CTAG	2 cut(s)	429, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.