Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0010543

Physical Location & Seq

Genomic Coordinates Reverse (-)

10679240 .. 10680055

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G180100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGAATTCACCTCAAGGCCTCAAGAAATCAGAGAGAAGCAACCATATTCATATTCTCCCATAAACTCCCCCAGAAGCAATGGCACCAACACAAACACAAAGACAAACACAAACAGCAGTGTCTGCAGCAGCAACACCAACAACAACAACAACAACAACAATAGCTCAGGGGTTCAAATCCCCACAACCCCAAAGCTCACAACTCCCAGATCTGACCCCAATCCCTACCCAACAACCTTTGTCCAAGCAGACACCACAAACTTCAAACATGTTGTCCAAATGCTCACAGGCTCCTCTGAAACTGTAAGCCACCAATCTTCCCCCAAACCAACCACAACCCATCATCACCATCATCCTCACAGCCATCAAGATCCAACCGTTTTACCCTCCTCCAACAAAAGCTTCAACATCCCACCAATCAAAACAGCCCCTCCCAAAAAGCAAGGCTTCAAGCTTTATGAGAGGAGGAGCACCAATCTCAAAAACACCCTCATGATCAACACCTTGATGCCCAATTTTCCCCATCAAGCATCTGGGTTCTCGCCACGTCATCAGGAGATCCTGTCCCCGAGCTTGCTGGACTTCCCTTCCCTCACTCTCAGCCCAGTGACCCCGTTAAACGACGACCCGTTTGACAAGTCCTCTTCGTCGCCTTCTTTGGGGAATTCTTCATCGGAGGAAGACAGAGCAATTGCAGAGAAGGGGTTTTACTTGCACCCATCTCCGAGAACGACGACAACTCCCAGAGACCCTGAGCCCAGGCTTTTGCCTTTGTTTCCAGTCACTTCGCCTAGAGTTTCTGGGTCTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

272

Amino Acids

29.86

Weight (kDa)

9.49

Isoelectric Point (pI)

58.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010543)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g19800
malus_domestica	MD03G1229000.v1.1 MD11G1249800.v1.1
prunus_persica	Prupe.4G180100_v2.0.a1
pyrus_communis	pycom03g17680 pycom11g22080
rosa_chinensis	RchiOBHm_Chr5g0033211
rosa_laevigata	RLG00000033458
rosa_multiflora	Rmu_co8031910.1_g000001 Rmu_sc0003351.1_g000005 Rmu_sc0018119.1_g000002 Rmu_ssc0000238.1_g000025 Rmu_ssc0000299.1_g000004
rosa_roxburghii	Rroxscaffold_1G00046770
rosa_rugosa	Rorug05G0137900
rosa_samantha	Rh5AG229500 Rh5BG230500 Rh5CG258400 Rh5DG235300
rosa_wichuraiana	Rw2G000340 Rw5G020990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AclWI	GGATC	2 cut(s)	365, 553
AcsI	RAATTY	2 cut(s)	5, 664
AfiI	CCNNNNNNNGG	1 cut(s)	659
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	4 cut(s)	176, 265, 406, 451
AjiI	CACGTC	1 cut(s)	548
AjnI	CCWGG	1 cut(s)	758
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AluBI	AGCT	5 cut(s)	165, 196, 402, 454, 573
AluI	AGCT	5 cut(s)	165, 196, 402, 454, 573
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	1 cut(s)	741
AlwI	GGATC	2 cut(s)	365, 553
AlwNI	CAGNNNCTG	1 cut(s)	123
Ama87I	CYCGRG	1 cut(s)	568
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	2 cut(s)	126, 129
ApoI	RAATTY	2 cut(s)	5, 664
ArsI	GACNNNNNNTTYG	4 cut(s)	258, 290, 614, 646
AsuHPI	GGTGA	1 cut(s)	338
AvaI	CYCGRG	1 cut(s)	568
BanI	GGYRCC	1 cut(s)	83
BanII	GRGCYC	1 cut(s)	759
BarI	GAAGNNNNNNTAC	2 cut(s)	692, 724
BbsI	GAAGAC	2 cut(s)	687, 798
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	2 cut(s)	138, 141
BccI	CCATC	5 cut(s)	348, 357, 372, 531, 727
BciT130I	CCWGG	1 cut(s)	760
BclI	TGATCA	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	741
BfaI	CTAG	1 cut(s)	792
BfmI	CTRYAG	1 cut(s)	124
BglII	AGATCT	1 cut(s)	209
BisI	GCNGC	2 cut(s)	127, 130
BlsI	GCNGC	2 cut(s)	128, 131
Bme1390I	CCNGG	1 cut(s)	760
BmeT110I	CYCGRG	1 cut(s)	568
BmgBI	CACGTC	1 cut(s)	548
BmiI	GGNNCC	2 cut(s)	85, 292
BmrFI	CCNGG	1 cut(s)	760
BmrI	ACTGGG	1 cut(s)	599
BmsI	GCATC	2 cut(s)	498, 539
BmuI	ACTGGG	1 cut(s)	599
BpiI	GAAGAC	2 cut(s)	687, 798
Bpu10I	CCTNAGC	2 cut(s)	166, 753
BpuEI	CTTGAG	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	741
BsaJI	CCNNGG	1 cut(s)	758
BsaXI	ACNNNNNCTCC	6 cut(s)	415, 445, 548, 578, 724, 754
Bsc4I	CCNNNNNNNGG	1 cut(s)	659
Bse1I	ACTGG	2 cut(s)	605, 779
Bse3DI	GCAATG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	760
BseDI	CCNNGG	1 cut(s)	758
BseGI	GGATG	2 cut(s)	352, 408
BseLI	CCNNNNNNNGG	1 cut(s)	659
BseMI	GCAATG	1 cut(s)	85
BseMII	CTCAG	3 cut(s)	180, 613, 744
BseNI	ACTGG	2 cut(s)	605, 779
BseRI	GAGGAG	4 cut(s)	283, 379, 478, 481
BseXI	GCAGC	2 cut(s)	138, 141
BshFI	GGCC	1 cut(s)	19
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	473
BsiHKCI	CYCGRG	1 cut(s)	568
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	1 cut(s)	659
BsmAI	GTCTC	1 cut(s)	741
BsmFI	GGGAC	1 cut(s)	550
BsnI	GGCC	1 cut(s)	19
Bso31I	GGTCTC	1 cut(s)	741
BsoBI	CYCGRG	1 cut(s)	568
Bsp1286I	GDGCHC	2 cut(s)	473, 759
Bsp143I	GATC	4 cut(s)	209, 370, 495, 558
BspANI	GGCC	1 cut(s)	19
BspCNI	CTCAG	3 cut(s)	179, 612, 745
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	2 cut(s)	85, 292
BspMAI	CTGCAG	1 cut(s)	128
BspPI	GGATC	2 cut(s)	365, 553
BspT107I	GGYRCC	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	741
BsrDI	GCAATG	1 cut(s)	85
BsrI	ACTGG	2 cut(s)	605, 779
BssECI	CCNNGG	1 cut(s)	758
BssMI	GATC	4 cut(s)	209, 370, 495, 558
Bst2UI	CCWGG	1 cut(s)	760
Bst4CI	ACNGT	2 cut(s)	304, 379
Bst6I	CTCTTC	1 cut(s)	649
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	575
BstDEI	CTNAG	3 cut(s)	166, 599, 753
BstF5I	GGATG	2 cut(s)	352, 408
BstKTI	GATC	4 cut(s)	212, 373, 498, 561
BstMAI	GTCTC	1 cut(s)	741
BstMBI	GATC	4 cut(s)	209, 370, 495, 558
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNI	CCWGG	1 cut(s)	760
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	758
BstSFI	CTRYAG	1 cut(s)	124
BstV1I	GCAGC	2 cut(s)	138, 141
BstV2I	GAAGAC	2 cut(s)	687, 798
BstX2I	RGATCY	3 cut(s)	209, 370, 558
BstYI	RGATCY	3 cut(s)	209, 370, 558
BsuRI	GGCC	1 cut(s)	19
BtrI	CACGTC	1 cut(s)	548
BtsCI	GGATG	2 cut(s)	352, 408
BtsI	GCAGTG	1 cut(s)	124
BtsIMutI	CAGTG	2 cut(s)	124, 612
Cac8I	GCNNGC	1 cut(s)	575
CaiI	CAGNNNCTG	1 cut(s)	123
CciI	TCATGA	1 cut(s)	492
CviAII	CATG	2 cut(s)	269, 493
DdeI	CTNAG	3 cut(s)	166, 599, 753
DpnI	GATC	4 cut(s)	211, 372, 497, 560
DpnII	GATC	4 cut(s)	209, 370, 495, 558
Eam1104I	CTCTTC	1 cut(s)	649
EarI	CTCTTC	1 cut(s)	649
Eco147I	AGGCCT	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	759
Eco31I	GGTCTC	1 cut(s)	741
Eco88I	CYCGRG	1 cut(s)	568
EcoRI	GAATTC	2 cut(s)	5, 664
EcoRII	CCWGG	1 cut(s)	758
EcoT38I	GRGCYC	1 cut(s)	759
FaeI	CATG	2 cut(s)	272, 496
FaiI	YATR	6 cut(s)	46, 52, 62, 270, 459, 494
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	2 cut(s)	268, 492
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	2 cut(s)	127, 130
FokI	GGATG	2 cut(s)	339, 395
FriOI	GRGCYC	1 cut(s)	759
Fsp4HI	GCNGC	2 cut(s)	127, 130
FspBI	CTAG	1 cut(s)	792
GluI	GCNGC	2 cut(s)	127, 130
HaeIII	GGCC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	272, 496
HindIII	AAGCTT	2 cut(s)	400, 452
HphI	GGTGA	1 cut(s)	338
Hpy188I	TCNGA	5 cut(s)	32, 214, 298, 676, 726
Hpy188III	TCNNGA	5 cut(s)	23, 368, 493, 554, 813
Hpy99I	CGWCG	3 cut(s)	626, 652, 736
HpyAV	CCTTC	3 cut(s)	597, 663, 694
HpyCH4III	ACNGT	2 cut(s)	304, 379
HpyCH4IV	ACGT	1 cut(s)	547
HpyCH4V	TGCA	3 cut(s)	126, 695, 715
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	3 cut(s)	166, 599, 753
HpySE526I	ACGT	1 cut(s)	547
Hsp92II	CATG	2 cut(s)	272, 496
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	4 cut(s)	209, 370, 495, 558
LmnI	GCTCC	2 cut(s)	296, 468
Lsp1109I	GCAGC	2 cut(s)	138, 141
LweI	GCATC	2 cut(s)	498, 539
MaeI	CTAG	1 cut(s)	792
MaeII	ACGT	1 cut(s)	547
MaeIII	GTNAC	2 cut(s)	607, 781
MalI	GATC	4 cut(s)	211, 372, 497, 560
MboI	GATC	4 cut(s)	209, 370, 495, 558
MboII	GAAGA	6 cut(s)	309, 636, 660, 692, 798, 801
MfeI	CAATTG	1 cut(s)	690
MflI	RGATCY	3 cut(s)	209, 370, 558
MhlI	GDGCHC	2 cut(s)	473, 759
MluCI	AATT	4 cut(s)	5, 514, 664, 690
MmeI	TCCRAC	2 cut(s)	398, 417
MseI	TTAA	1 cut(s)	617
MslI	CAYNNNNRTG	2 cut(s)	491, 506
MspR9I	CCNGG	1 cut(s)	760
MunI	CAATTG	1 cut(s)	690
MvaI	CCWGG	1 cut(s)	760
MwoI	GCNNNNNNNGC	1 cut(s)	123
NdeII	GATC	4 cut(s)	209, 370, 495, 558
NlaIII	CATG	2 cut(s)	272, 496
NlaIV	GGNNCC	2 cut(s)	85, 292
NmuCI	GTSAC	2 cut(s)	607, 781
NspI	RCATGY	1 cut(s)	272
PagI	TCATGA	1 cut(s)	492
PceI	AGGCCT	1 cut(s)	19
PciI	ACATGT	1 cut(s)	268
PkrI	GCNGC	2 cut(s)	128, 131
PscI	ACATGT	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	758
PspGI	CCWGG	1 cut(s)	758
PspN4I	GGNNCC	2 cut(s)	85, 292
PstI	CTGCAG	1 cut(s)	128
PstNI	CAGNNNCTG	1 cut(s)	123
PsuI	RGATCY	3 cut(s)	209, 370, 558
RseI	CAYNNNNRTG	2 cut(s)	491, 506
SaqAI	TTAA	1 cut(s)	617
SatI	GCNGC	2 cut(s)	127, 130
Sau3AI	GATC	4 cut(s)	209, 370, 495, 558
ScrFI	CCNGG	1 cut(s)	760
SduI	GDGCHC	2 cut(s)	473, 759
SetI	ASST	9 cut(s)	14, 167, 198, 239, 404, 456, 506, 550, 575
SfaNI	GCATC	2 cut(s)	498, 539
SfcI	CTRYAG	1 cut(s)	124
SmiMI	CAYNNNNRTG	2 cut(s)	491, 506
SmlI	CTYRAG	2 cut(s)	13, 21
SmoI	CTYRAG	2 cut(s)	13, 21
Sse9I	AATT	4 cut(s)	5, 514, 664, 690
SseBI	AGGCCT	1 cut(s)	19
SspMI	CTAG	1 cut(s)	792
StuI	AGGCCT	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	758
TaaI	ACNGT	2 cut(s)	304, 379
TaiI	ACGT	1 cut(s)	550
TasI	AATT	4 cut(s)	5, 514, 664, 690
Tru1I	TTAA	1 cut(s)	617
Tru9I	TTAA	1 cut(s)	617
TscAI	CASTG	2 cut(s)	124, 612
TseFI	GTSAC	2 cut(s)	607, 781
TseI	GCWGC	2 cut(s)	126, 129
Tsp45I	GTSAC	2 cut(s)	607, 781
TspDTI	ATGAA	2 cut(s)	39, 660
TspRI	CASTG	2 cut(s)	124, 612
XapI	RAATTY	2 cut(s)	5, 664
XceI	RCATGY	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	530
XspI	CTAG	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.