Rmu_sc0003351.1_g000005

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003351.1
OG0010543
Physical Location & Seq
Forward (+)
6570 .. 7404
835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003351.1_g000005.1.cds

Sequence Viewer

Length: 576 bp
ctgactcccatatctaactccaacccttacgccaccaccttcgtccaggccgactcctccaacttcaagcacgtagtccaaatgctcaccggctcatcggagaccacaacgaagcaaactaacaagcacacacatgagtcatcgtcgtccccactatcatccaagaacttcaccatccctccgccgcgttacccggccgagatcttgtcgccgagtctgcttgactttcagtcgctgacgctgagcccgatgaccccattgaatgacgaccattttgacaagtcggcgtcgtcgttggaggaggatcgggctattttacttgcacccgtctccgagaacgagctccagtactcccagaaagccagagccccagcttttgccattgtttctggtcacttcgccaagagtactgatattttggagatgatctcggtggcgttagtgatgctttgggcgaaggagaaggagaggagagagaagaagaagaagagtgaggttgaagaagaagaagaagaagcctttttttttttaatttcttgggagagagtcaccatcgtcggactggtcttgggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

191

Amino Acids

21.32

Weight (kDa)

5.28

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 187
AciI CCGC 2 cut(s) 182, 185
AclWI GGATC 1 cut(s) 312
AcoI YGGCCR 1 cut(s) 195
AcyI GRCGYC 1 cut(s) 287
AfaI GTAC 2 cut(s) 350, 409
AgsI TTSAA 3 cut(s) 67, 262, 500
AhdI GACNNNNNGTC 1 cut(s) 229
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 2 cut(s) 343, 374
AluI AGCT 2 cut(s) 343, 374
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 2 cut(s) 95, 334
AlwI GGATC 1 cut(s) 312
AlwNI CAGNNNCTG 1 cut(s) 235
AoxI GGCC 2 cut(s) 48, 195
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 3 cut(s) 79, 163, 541
BanII GRGCYC 3 cut(s) 248, 345, 370
Bbv12I GWGCWC 1 cut(s) 345
BccI CCATC 2 cut(s) 182, 560
BciT130I CCWGG 1 cut(s) 47
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 95, 334
BfaI CTAG 1 cut(s) 574
BglII AGATCT 1 cut(s) 201
BisI GCNGC 1 cut(s) 185
BlpI GCTNAGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 186
BmcAI AGTACT 2 cut(s) 350, 409
Bme1390I CCNGG 2 cut(s) 47, 194
BmeRI GACNNNNNGTC 1 cut(s) 229
BmrFI CCNGG 2 cut(s) 47, 194
BmsI GCATC 1 cut(s) 435
BplI GAGNNNNNCTC 2 cut(s) 413, 445
BpmI CTGGAG 1 cut(s) 329
Bpu1102I GCTNAGC 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 194
BsaAI YACGTR 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 287
BsaI GGTCTC 1 cut(s) 95
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 346, 567
BseBI CCWGG 1 cut(s) 47
BseGI GGATG 2 cut(s) 158, 174
BseMII CTCAG 1 cut(s) 233
BseNI ACTGG 2 cut(s) 346, 567
BseRI GAGGAG 3 cut(s) 46, 314, 484
BseX3I CGGCCG 1 cut(s) 195
BseYI CCCAGC 1 cut(s) 370
Bsh1236I CGCG 1 cut(s) 187
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 2 cut(s) 50, 197
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 2 cut(s) 90, 194
BslFI GGGAC 1 cut(s) 133
BsmAI GTCTC 2 cut(s) 95, 334
BsmBI CGTCTC 1 cut(s) 334
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 2 cut(s) 50, 197
Bso31I GGTCTC 1 cut(s) 95
Bsp1286I GDGCHC 3 cut(s) 248, 345, 370
Bsp143I GATC 3 cut(s) 201, 304, 426
Bsp1720I GCTNAGC 1 cut(s) 242
BspACI CCGC 2 cut(s) 182, 185
BspANI GGCC 2 cut(s) 50, 197
BspCNI CTCAG 1 cut(s) 234
BspFNI CGCG 1 cut(s) 187
BspPI GGATC 1 cut(s) 312
BspTNI GGTCTC 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 2 cut(s) 346, 567
BssAI RCCGGY 1 cut(s) 89
BssMI GATC 3 cut(s) 201, 304, 426
BssNI GRCGYC 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 482
BstACI GRCGYC 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 158, 174
BstFNI CGCG 1 cut(s) 187
BstKTI GATC 3 cut(s) 204, 307, 429
BstMAI GTCTC 2 cut(s) 95, 334
BstMBI GATC 3 cut(s) 201, 304, 426
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 2 cut(s) 45, 192
BstUI CGCG 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BstZI CGGCCG 1 cut(s) 195
BsuRI GGCC 2 cut(s) 50, 197
BtsCI GGATG 2 cut(s) 158, 174
CaiI CAGNNNCTG 1 cut(s) 235
Cfr10I RCCGGY 1 cut(s) 89
CseI GACGC 2 cut(s) 247, 276
Csp6I GTAC 2 cut(s) 349, 408
CviAII CATG 1 cut(s) 134
CviQI GTAC 2 cut(s) 349, 408
DdeI CTNAG 1 cut(s) 242
DpnI GATC 3 cut(s) 203, 306, 428
DpnII GATC 3 cut(s) 201, 304, 426
DriI GACNNNNNGTC 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 195
EagI CGGCCG 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 482
Eam1105I GACNNNNNGTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 482
EciI GGCGGA 1 cut(s) 171
Ecl136II GAGCTC 1 cut(s) 343
EclXI CGGCCG 1 cut(s) 195
Eco24I GRGCYC 3 cut(s) 248, 345, 370
Eco31I GGTCTC 1 cut(s) 95
Eco52I CGGCCG 1 cut(s) 195
Eco53kI GAGCTC 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 45
EcoT38I GRGCYC 3 cut(s) 248, 345, 370
Esp3I CGTCTC 1 cut(s) 334
FaeI CATG 1 cut(s) 137
FaiI YATR 2 cut(s) 11, 135
FaqI GGGAC 1 cut(s) 133
FatI CATG 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 2 cut(s) 145, 161
FriOI GRGCYC 3 cut(s) 248, 345, 370
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 1 cut(s) 574
GluI GCNGC 1 cut(s) 185
GsaI CCCAGC 1 cut(s) 374
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 2 cut(s) 50, 197
HapII CCGG 2 cut(s) 90, 194
HgaI GACGC 2 cut(s) 247, 276
Hin1I GRCGYC 1 cut(s) 287
Hin1II CATG 1 cut(s) 137
HinfI GANTC 5 cut(s) 4, 53, 137, 214, 546
HpaII CCGG 2 cut(s) 90, 194
HphI GGTGA 3 cut(s) 79, 163, 541
Hpy188I TCNGA 3 cut(s) 100, 334, 560
Hpy99I CGWCG 4 cut(s) 148, 292, 295, 560
HpyAV CCTTC 3 cut(s) 49, 451, 457
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 287
Hsp92II CATG 1 cut(s) 137
Kzo9I GATC 3 cut(s) 201, 304, 426
LmnI GCTCC 1 cut(s) 348
LweI GCATC 1 cut(s) 435
MaeI CTAG 1 cut(s) 574
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 3 cut(s) 188, 392, 547
MalI GATC 3 cut(s) 203, 306, 428
MboI GATC 3 cut(s) 201, 304, 426
MboII GAAGA 9 cut(s) 490, 493, 496, 499, 512, 515, 518, 521, 524
MflI RGATCY 1 cut(s) 201
MhlI GDGCHC 3 cut(s) 248, 345, 370
MluCI AATT 1 cut(s) 531
MlyI GAGTC 4 cut(s) 47, 146, 223, 555
MmeI TCCRAC 4 cut(s) 45, 84, 276, 538
MnlI CCTC 6 cut(s) 67, 189, 292, 295, 462, 487
MseI TTAA 1 cut(s) 530
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 2 cut(s) 90, 194
MspR9I CCNGG 2 cut(s) 47, 194
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 217
NciI CCSGG 1 cut(s) 194
NdeII GATC 3 cut(s) 201, 304, 426
NlaIII CATG 1 cut(s) 137
NmeAIII GCCGAG 2 cut(s) 223, 237
NmuCI GTSAC 2 cut(s) 392, 547
PcsI WCGNNNNNNNCGW 3 cut(s) 48, 245, 290
PkrI GCNGC 1 cut(s) 186
PleI GAGTC 4 cut(s) 47, 145, 222, 554
PpsI GAGTC 4 cut(s) 47, 145, 222, 554
Ppu21I YACGTR 1 cut(s) 73
Psp124BI GAGCTC 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 370
PspGI CCWGG 1 cut(s) 45
PstNI CAGNNNCTG 1 cut(s) 235
PsuI RGATCY 1 cut(s) 201
RsaI GTAC 2 cut(s) 350, 409
RsaNI GTAC 2 cut(s) 349, 408
RseI CAYNNNNRTG 1 cut(s) 132
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 1 cut(s) 530
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 3 cut(s) 201, 304, 426
ScaI AGTACT 2 cut(s) 350, 409
SchI GAGTC 4 cut(s) 47, 146, 223, 555
ScrFI CCNGG 2 cut(s) 47, 194
SduI GDGCHC 3 cut(s) 248, 345, 370
SetI ASST 5 cut(s) 41, 75, 345, 376, 498
SfaNI GCATC 1 cut(s) 435
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 1 cut(s) 531
SsiI CCGC 2 cut(s) 182, 185
SspMI CTAG 1 cut(s) 574
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 2 cut(s) 45, 192
TaiI ACGT 1 cut(s) 75
TasI AATT 1 cut(s) 531
TatI WGTACW 2 cut(s) 348, 407
TauI GCSGC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 530
Tru9I TTAA 1 cut(s) 530
TseFI GTSAC 2 cut(s) 392, 547
Tsp45I GTSAC 2 cut(s) 392, 547
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
XspI CTAG 1 cut(s) 574
ZrmI AGTACT 2 cut(s) 350, 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.