Rw5G020990

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0010543
Physical Location & Seq
Reverse (-)
27870343 .. 27872002
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G020990.1

Sequence Viewer

Length: 753 bp
ATGGAGTACACATCAAGGTCTCAGGAACAAACCCGAGATCATCATCTTCATCAGAAGCCGCCTGCTTCATATTCTCCTCTAAACTCCCCCACCAGCAATGGCAGCAGCAACAACAACAACAACAACTCCGGAGTTCAAACTCCGACAACTCCAAAGCTGACTCCCAGATCTGACTCCAACCCTTACGCCACCACCTTCGTCCAGGCCGACTCCTCCAACTTCAAGCACGTAGTCCAAATGCTCACCGGCTCATCGGAGACCACAACGAAGCAAACTAACAAGCACACACAGGAGTCATCGTCGTCCCCACTGTCGTCCAAGAACTTCACCATCCCTCCGGTGAAGACCGCGCCGAAGAAGCAGCAGGGCTTCAAGCTCTACGAGAGGAGGAGCCAGAACCTCAAGAACAGCCTGATGATCAATACCCTGATGCCCAATTTTGCCCACCACCGGAGCCAAGCCTCTTCTGGGTTCTCGCCGCGTCACCCGGCCGAGATCTTGTCGCCGAGCCTGCTCGACTTTCCGTCGCTGACGCTGAGCCCGGTGACCCCATTGAACGACGACCATTTTGACAAGTCGGCGTCGTCGCCGTTGGGGAACTCGTCATCGGAGGAGGATCGGGCTATAGCCGAGAAGGGTTTTTACTTGCACCCGTCTCCGAGAACGAGCACCAGCACTCCCAGAGAGCCAGAGCCCCGGCTTTTGCCATTGTTTCCGGTCACTTCGCCGAGAGTTTCAGGGTCGTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

250

Amino Acids

27.41

Weight (kDa)

9.58

Isoelectric Point (pI)

67.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 61 - 87 2.7e-09 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 350, 481
AccIII TCCGGA 1 cut(s) 128
AciI CCGC 3 cut(s) 59, 348, 479
AclWI GGATC 1 cut(s) 624
AcoI YGGCCR 1 cut(s) 489
AcyI GRCGYC 1 cut(s) 581
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 2 cut(s) 450, 468
AgsI TTSAA 4 cut(s) 137, 223, 373, 556
AhdI GACNNNNNGTC 1 cut(s) 523
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 2 cut(s) 157, 376
AluI AGCT 2 cut(s) 157, 376
Alw21I GWGCWC 1 cut(s) 671
Alw26I GTCTC 3 cut(s) 24, 251, 660
AlwI GGATC 1 cut(s) 624
Ama87I CYCGRG 1 cut(s) 33
Aor13HI TCCGGA 1 cut(s) 128
AoxI GGCC 2 cut(s) 204, 489
ApeKI GCWGC 3 cut(s) 102, 105, 361
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
AspLEI GCGC 1 cut(s) 352
AsuC2I CCSGG 3 cut(s) 488, 542, 697
AsuHPI GGTGA 5 cut(s) 235, 319, 352, 476, 556
AvaI CYCGRG 1 cut(s) 33
BanII GRGCYC 2 cut(s) 542, 696
BarI GAAGNNNNNNTAC 2 cut(s) 626, 658
BbsI GAAGAC 2 cut(s) 350, 738
Bbv12I GWGCWC 1 cut(s) 671
BbvI GCAGC 3 cut(s) 114, 117, 373
BccI CCATC 1 cut(s) 338
BceAI ACGGC 1 cut(s) 574
BciT130I CCWGG 1 cut(s) 203
BclI TGATCA 1 cut(s) 417
BcnI CCSGG 3 cut(s) 488, 542, 697
BcoDI GTCTC 3 cut(s) 24, 251, 660
BfmI CTRYAG 1 cut(s) 624
BglII AGATCT 2 cut(s) 167, 495
BisI GCNGC 5 cut(s) 59, 103, 106, 362, 479
BlpI GCTNAGC 1 cut(s) 536
BlsI GCNGC 5 cut(s) 60, 104, 107, 363, 480
Bme1390I CCNGG 4 cut(s) 203, 488, 542, 697
BmeRI GACNNNNNGTC 1 cut(s) 523
BmeT110I CYCGRG 1 cut(s) 33
BmiI GGNNCC 2 cut(s) 392, 455
BmrFI CCNGG 4 cut(s) 203, 488, 542, 697
BmsI GCATC 1 cut(s) 420
BpiI GAAGAC 2 cut(s) 350, 738
Bpu1102I GCTNAGC 1 cut(s) 536
BpuEI CTTGAG 1 cut(s) 386
BpuMI CCSGG 3 cut(s) 488, 542, 697
BsaAI YACGTR 1 cut(s) 229
BsaBI GATNNNNATC 1 cut(s) 42
BsaHI GRCGYC 1 cut(s) 581
BsaI GGTCTC 2 cut(s) 24, 251
BsaJI CCNNGG 1 cut(s) 695
BsaWI WCCGGW 4 cut(s) 128, 337, 450, 715
BsaXI ACNNNNNCTCC 8 cut(s) 110, 140, 284, 314, 319, 349, 661, 691
Bsc4I CCNNNNNNNGG 2 cut(s) 450, 468
Bse118I RCCGGY 1 cut(s) 245
Bse3DI GCAATG 1 cut(s) 103
Bse8I GATNNNNATC 1 cut(s) 42
BseAI TCCGGA 1 cut(s) 128
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 695
BseGI GGATG 1 cut(s) 330
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 450, 468
BseMI GCAATG 1 cut(s) 103
BseMII CTCAG 2 cut(s) 35, 527
BseRI GAGGAG 5 cut(s) 66, 202, 400, 403, 626
BseX3I CGGCCG 1 cut(s) 489
BseXI GCAGC 3 cut(s) 114, 117, 373
Bsh1236I CGCG 2 cut(s) 350, 481
Bsh1285I CGRYCG 1 cut(s) 492
BshFI GGCC 2 cut(s) 206, 491
BsiEI CGRYCG 1 cut(s) 492
BsiHKAI GWGCWC 1 cut(s) 671
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 8 cut(s) 129, 246, 338, 451, 488, 542, 697, 716
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 2 cut(s) 450, 468
BsmAI GTCTC 3 cut(s) 24, 251, 660
BsmBI CGTCTC 1 cut(s) 660
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 2 cut(s) 206, 491
Bso31I GGTCTC 2 cut(s) 24, 251
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 3 cut(s) 542, 671, 696
Bsp13I TCCGGA 1 cut(s) 128
Bsp143I GATC 5 cut(s) 37, 167, 417, 495, 616
Bsp1720I GCTNAGC 1 cut(s) 536
BspACI CCGC 3 cut(s) 59, 348, 479
BspANI GGCC 2 cut(s) 206, 491
BspCNI CTCAG 2 cut(s) 34, 528
BspEI TCCGGA 1 cut(s) 128
BspFNI CGCG 2 cut(s) 350, 481
BspLI GGNNCC 2 cut(s) 392, 455
BspPI GGATC 1 cut(s) 624
BspTNI GGTCTC 2 cut(s) 24, 251
BsrDI GCAATG 1 cut(s) 103
BsrFI RCCGGY 1 cut(s) 245
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 695
BssMI GATC 5 cut(s) 37, 167, 417, 495, 616
BssNI GRCGYC 1 cut(s) 581
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 312
Bst6I CTCTTC 1 cut(s) 469
BstACI GRCGYC 1 cut(s) 581
BstBAI YACGTR 1 cut(s) 229
BstC8I GCNNGC 2 cut(s) 63, 512
BstDEI CTNAG 2 cut(s) 21, 536
BstEII GGTNACC 1 cut(s) 544
BstF5I GGATG 1 cut(s) 330
BstFNI CGCG 2 cut(s) 350, 481
BstHHI GCGC 1 cut(s) 352
BstKTI GATC 5 cut(s) 40, 170, 420, 498, 619
BstMAI GTCTC 3 cut(s) 24, 251, 660
BstMBI GATC 5 cut(s) 37, 167, 417, 495, 616
BstMCI CGRYCG 1 cut(s) 492
BstMWI GCNNNNNNNGC 3 cut(s) 102, 358, 511
BstNI CCWGG 1 cut(s) 203
BstPI GGTNACC 1 cut(s) 544
BstSCI CCNGG 4 cut(s) 201, 486, 540, 695
BstSFI CTRYAG 1 cut(s) 624
BstUI CGCG 2 cut(s) 350, 481
BstV1I GCAGC 3 cut(s) 114, 117, 373
BstV2I GAAGAC 2 cut(s) 350, 738
BstX2I RGATCY 2 cut(s) 167, 495
BstYI RGATCY 2 cut(s) 167, 495
BstZI CGGCCG 1 cut(s) 489
BsuRI GGCC 2 cut(s) 206, 491
BtsCI GGATG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 308
Cac8I GCNNGC 2 cut(s) 63, 512
CfoI GCGC 1 cut(s) 352
Cfr10I RCCGGY 1 cut(s) 245
CseI GACGC 3 cut(s) 470, 541, 570
Csp6I GTAC 1 cut(s) 7
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 2 cut(s) 21, 536
DpnI GATC 5 cut(s) 39, 169, 419, 497, 618
DpnII GATC 5 cut(s) 37, 167, 417, 495, 616
DriI GACNNNNNGTC 1 cut(s) 523
EaeI YGGCCR 1 cut(s) 489
EagI CGGCCG 1 cut(s) 489
Eam1104I CTCTTC 1 cut(s) 469
Eam1105I GACNNNNNGTC 1 cut(s) 523
EarI CTCTTC 1 cut(s) 469
EclXI CGGCCG 1 cut(s) 489
Eco24I GRGCYC 2 cut(s) 542, 696
Eco31I GGTCTC 2 cut(s) 24, 251
Eco52I CGGCCG 1 cut(s) 489
Eco88I CYCGRG 1 cut(s) 33
Eco91I GGTNACC 1 cut(s) 544
EcoO65I GGTNACC 1 cut(s) 544
EcoRII CCWGG 1 cut(s) 201
EcoT38I GRGCYC 2 cut(s) 542, 696
Esp3I CGTCTC 1 cut(s) 660
FaiI YATR 2 cut(s) 70, 626
FaqI GGGAC 1 cut(s) 289
FbaI TGATCA 1 cut(s) 417
Fnu4HI GCNGC 5 cut(s) 59, 103, 106, 362, 479
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 2 cut(s) 542, 696
Fsp4HI GCNGC 5 cut(s) 59, 103, 106, 362, 479
GlaI GCGC 1 cut(s) 351
GluI GCNGC 5 cut(s) 59, 103, 106, 362, 479
HaeIII GGCC 2 cut(s) 206, 491
HapII CCGG 8 cut(s) 129, 246, 338, 451, 488, 542, 697, 716
HgaI GACGC 3 cut(s) 470, 541, 570
HhaI GCGC 1 cut(s) 352
Hin1I GRCGYC 1 cut(s) 581
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HinfI GANTC 4 cut(s) 160, 173, 209, 293
HpaII CCGG 8 cut(s) 129, 246, 338, 451, 488, 542, 697, 716
HphI GGTGA 5 cut(s) 235, 319, 352, 476, 556
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 6 cut(s) 54, 144, 172, 256, 610, 660
Hpy188III TCNNGA 4 cut(s) 23, 129, 403, 750
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 5 cut(s) 304, 529, 563, 586, 589
HpyAV CCTTC 2 cut(s) 205, 628
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 1 cut(s) 649
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 358, 511
HpyF3I CTNAG 2 cut(s) 21, 536
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 581
HspAI GCGC 1 cut(s) 350
Kpn2I TCCGGA 1 cut(s) 128
Ksp22I TGATCA 1 cut(s) 417
Kzo9I GATC 5 cut(s) 37, 167, 417, 495, 616
LmnI GCTCC 2 cut(s) 390, 453
Lsp1109I GCAGC 3 cut(s) 114, 117, 373
LweI GCATC 1 cut(s) 420
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 3 cut(s) 482, 544, 718
MalI GATC 5 cut(s) 39, 169, 419, 497, 618
MboI GATC 5 cut(s) 37, 167, 417, 495, 616
MboII GAAGA 5 cut(s) 38, 355, 367, 456, 738
MflI RGATCY 2 cut(s) 167, 495
MhlI GDGCHC 3 cut(s) 542, 671, 696
MluCI AATT 1 cut(s) 436
MlyI GAGTC 4 cut(s) 154, 167, 203, 302
MmeI TCCRAC 3 cut(s) 167, 201, 240
MnlI CCTC 9 cut(s) 87, 223, 345, 378, 381, 410, 472, 604, 607
MroI TCCGGA 1 cut(s) 128
MspI CCGG 8 cut(s) 129, 246, 338, 451, 488, 542, 697, 716
MspR9I CCNGG 4 cut(s) 203, 488, 542, 697
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 2 cut(s) 350, 481
MwoI GCNNNNNNNGC 3 cut(s) 102, 358, 511
NciI CCSGG 3 cut(s) 488, 542, 697
NdeII GATC 5 cut(s) 37, 167, 417, 495, 616
NlaIV GGNNCC 2 cut(s) 392, 455
NmeAIII GCCGAG 4 cut(s) 517, 531, 655, 753
NmuCI GTSAC 3 cut(s) 482, 544, 718
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PkrI GCNGC 5 cut(s) 60, 104, 107, 363, 480
PleI GAGTC 4 cut(s) 154, 167, 203, 301
PpsI GAGTC 4 cut(s) 154, 167, 203, 301
Ppu21I YACGTR 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 201
PspEI GGTNACC 1 cut(s) 544
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 392, 455
PsuI RGATCY 2 cut(s) 167, 495
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SatI GCNGC 5 cut(s) 59, 103, 106, 362, 479
Sau3AI GATC 5 cut(s) 37, 167, 417, 495, 616
SchI GAGTC 4 cut(s) 154, 167, 203, 302
ScrFI CCNGG 4 cut(s) 203, 488, 542, 697
SduI GDGCHC 3 cut(s) 542, 671, 696
SetI ASST 6 cut(s) 20, 159, 197, 231, 378, 402
SfaNI GCATC 1 cut(s) 420
SfcI CTRYAG 1 cut(s) 624
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 1 cut(s) 436
SsiI CCGC 3 cut(s) 59, 348, 479
StyD4I CCNGG 4 cut(s) 201, 486, 540, 695
TaaI ACNGT 1 cut(s) 312
TaiI ACGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 516
TasI AATT 1 cut(s) 436
TatI WGTACW 1 cut(s) 6
TauI GCSGC 2 cut(s) 61, 481
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 3 cut(s) 482, 544, 718
TseI GCWGC 3 cut(s) 102, 105, 361
Tsp45I GTSAC 3 cut(s) 482, 544, 718
TspDTI ATGAA 2 cut(s) 38, 57
TspGWI ACGGA 1 cut(s) 513
TspRI CASTG 1 cut(s) 315
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.