RLG00000033458

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010543
Physical Location & Seq
Reverse (-)
27504226 .. 27504990
765 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033458

Sequence Viewer

Length: 765 bp
ATGGAGTACACATCAAGGCCTCAGGAACAAACCCGAGATCATCATCATCCTCACCATCATCAGAAGCCGCCTGCTTCTTATTCTCCTCTAAACTCCCCCACCAGCAATGGCAGCAGCAACAACAACAACAACAACAACTCCGGAGTTCAAACTCCGACAACTCCAAAGCTGACTCCCAGATCTGACTCCAACCCTTACGCCACCACCTTCGTCCAGGCCGACTCCTCCAACTTCAAGCACGTAGTCCAAATGCTCACCGGCTCATCGGAGACCACAACGAAGCAAACTAACAAGCACACACAGGAGTCATCGTCGTCCCCACTGTCGTCCAAGAACTTCACCATCCCTCCGGTGAAGACCGCGCCGAAGAAGCAGCAGGGCTTCAAGCTCTACGAGAGGAGGAGCCAGAACCTCAAGAACAGCCTGATGATCAATACCCTGATGCCCAATTTTGCCCACCACCGGAGCCAAGCCTCTTCTGGGTTCTCGCCACGTCACCCGGCCGAGATCTTATCGCCGAGTCTGCTCGACTTTCCGTCGCTGACGCTGAGCCCGGTGACCCCATTGAACGACGACCATTTTGACAAGTCGGCGTCGTCGCCGTTGGGGAACTCGTCGTCGGAGGAGGATCGGGCTATTGCCGAGAAGGGTTTTTACTTGCACCCGTCTCCGAGAACGAGCACCAGTACTCCCAGAGAGCCAGAGCCCCGGCTTTTGCCATTGTTTCCGGTCACTTCGCCGAGAGTTTCAGGGTCGTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

255

Amino Acids

27.93

Weight (kDa)

9.58

Isoelectric Point (pI)

65.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 65 - 91 2.8e-09 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 362
AccIII TCCGGA 1 cut(s) 140
AciI CCGC 2 cut(s) 68, 360
AclWI GGATC 1 cut(s) 636
AcoI YGGCCR 1 cut(s) 501
AcyI GRCGYC 1 cut(s) 593
AfaI GTAC 2 cut(s) 8, 688
AfiI CCNNNNNNNGG 2 cut(s) 462, 480
AgsI TTSAA 4 cut(s) 149, 235, 385, 568
AhdI GACNNNNNGTC 1 cut(s) 535
AjiI CACGTC 1 cut(s) 494
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 2 cut(s) 169, 388
AluI AGCT 2 cut(s) 169, 388
Alw21I GWGCWC 1 cut(s) 683
Alw26I GTCTC 2 cut(s) 263, 672
AlwI GGATC 1 cut(s) 636
Ama87I CYCGRG 1 cut(s) 33
Aor13HI TCCGGA 1 cut(s) 140
AoxI GGCC 3 cut(s) 17, 216, 501
ApeKI GCWGC 3 cut(s) 111, 114, 373
ArsI GACNNNNNNTTYG 2 cut(s) 563, 595
AspLEI GCGC 1 cut(s) 364
AsuC2I CCSGG 3 cut(s) 500, 554, 709
AsuHPI GGTGA 6 cut(s) 44, 247, 331, 364, 488, 568
AvaI CYCGRG 1 cut(s) 33
AxyI CCTNAGG 1 cut(s) 21
BanII GRGCYC 2 cut(s) 554, 708
BarI GAAGNNNNNNTAC 2 cut(s) 638, 670
BbsI GAAGAC 2 cut(s) 362, 750
Bbv12I GWGCWC 1 cut(s) 683
BbvI GCAGC 3 cut(s) 123, 126, 385
BccI CCATC 2 cut(s) 63, 350
BceAI ACGGC 1 cut(s) 586
BciT130I CCWGG 1 cut(s) 215
BclI TGATCA 1 cut(s) 429
BcnI CCSGG 3 cut(s) 500, 554, 709
BcoDI GTCTC 2 cut(s) 263, 672
BglII AGATCT 2 cut(s) 179, 507
BisI GCNGC 4 cut(s) 68, 112, 115, 374
BlpI GCTNAGC 1 cut(s) 548
BlsI GCNGC 4 cut(s) 69, 113, 116, 375
BmcAI AGTACT 1 cut(s) 688
Bme1390I CCNGG 4 cut(s) 215, 500, 554, 709
BmeRI GACNNNNNGTC 1 cut(s) 535
BmeT110I CYCGRG 1 cut(s) 33
BmgBI CACGTC 1 cut(s) 494
BmiI GGNNCC 2 cut(s) 404, 467
BmrFI CCNGG 4 cut(s) 215, 500, 554, 709
BmsI GCATC 1 cut(s) 432
BpiI GAAGAC 2 cut(s) 362, 750
Bpu1102I GCTNAGC 1 cut(s) 548
BpuEI CTTGAG 1 cut(s) 398
BpuMI CCSGG 3 cut(s) 500, 554, 709
BsaAI YACGTR 1 cut(s) 241
BsaBI GATNNNNATC 1 cut(s) 42
BsaHI GRCGYC 1 cut(s) 593
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 707
BsaWI WCCGGW 4 cut(s) 140, 349, 462, 727
BsaXI ACNNNNNCTCC 8 cut(s) 122, 152, 296, 326, 331, 361, 673, 703
Bsc4I CCNNNNNNNGG 2 cut(s) 462, 480
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 684
Bse21I CCTNAGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 42
BseAI TCCGGA 1 cut(s) 140
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 707
BseGI GGATG 2 cut(s) 46, 342
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 462, 480
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 2 cut(s) 35, 539
BseNI ACTGG 1 cut(s) 684
BseRI GAGGAG 5 cut(s) 75, 214, 412, 415, 638
BseX3I CGGCCG 1 cut(s) 501
BseXI GCAGC 3 cut(s) 123, 126, 385
Bsh1236I CGCG 1 cut(s) 362
Bsh1285I CGRYCG 1 cut(s) 504
BshFI GGCC 3 cut(s) 19, 218, 503
BsiEI CGRYCG 1 cut(s) 504
BsiHKAI GWGCWC 1 cut(s) 683
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 8 cut(s) 141, 258, 350, 463, 500, 554, 709, 728
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 2 cut(s) 462, 480
BsmAI GTCTC 2 cut(s) 263, 672
BsmBI CGTCTC 1 cut(s) 672
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 3 cut(s) 19, 218, 503
Bso31I GGTCTC 1 cut(s) 263
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 3 cut(s) 554, 683, 708
Bsp13I TCCGGA 1 cut(s) 140
Bsp143I GATC 5 cut(s) 37, 179, 429, 507, 628
Bsp1720I GCTNAGC 1 cut(s) 548
BspACI CCGC 2 cut(s) 68, 360
BspANI GGCC 3 cut(s) 19, 218, 503
BspCNI CTCAG 2 cut(s) 34, 540
BspEI TCCGGA 1 cut(s) 140
BspFNI CGCG 1 cut(s) 362
BspLI GGNNCC 2 cut(s) 404, 467
BspPI GGATC 1 cut(s) 636
BspTNI GGTCTC 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 1 cut(s) 684
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 707
BssMI GATC 5 cut(s) 37, 179, 429, 507, 628
BssNI GRCGYC 1 cut(s) 593
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 324
Bst6I CTCTTC 1 cut(s) 481
BstACI GRCGYC 1 cut(s) 593
BstBAI YACGTR 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 2 cut(s) 21, 548
BstEII GGTNACC 1 cut(s) 556
BstF5I GGATG 2 cut(s) 46, 342
BstFNI CGCG 1 cut(s) 362
BstHHI GCGC 1 cut(s) 364
BstKTI GATC 5 cut(s) 40, 182, 432, 510, 631
BstMAI GTCTC 2 cut(s) 263, 672
BstMBI GATC 5 cut(s) 37, 179, 429, 507, 628
BstMCI CGRYCG 1 cut(s) 504
BstMWI GCNNNNNNNGC 3 cut(s) 111, 370, 523
BstNI CCWGG 1 cut(s) 215
BstPI GGTNACC 1 cut(s) 556
BstSCI CCNGG 4 cut(s) 213, 498, 552, 707
BstUI CGCG 1 cut(s) 362
BstV1I GCAGC 3 cut(s) 123, 126, 385
BstV2I GAAGAC 2 cut(s) 362, 750
BstX2I RGATCY 2 cut(s) 179, 507
BstYI RGATCY 2 cut(s) 179, 507
BstZI CGGCCG 1 cut(s) 501
Bsu36I CCTNAGG 1 cut(s) 21
BsuRI GGCC 3 cut(s) 19, 218, 503
BtrI CACGTC 1 cut(s) 494
BtsCI GGATG 2 cut(s) 46, 342
BtsIMutI CAGTG 1 cut(s) 320
Cac8I GCNNGC 1 cut(s) 72
CfoI GCGC 1 cut(s) 364
Cfr10I RCCGGY 1 cut(s) 257
CseI GACGC 2 cut(s) 553, 582
Csp6I GTAC 2 cut(s) 7, 687
CviQI GTAC 2 cut(s) 7, 687
DdeI CTNAG 2 cut(s) 21, 548
DpnI GATC 5 cut(s) 39, 181, 431, 509, 630
DpnII GATC 5 cut(s) 37, 179, 429, 507, 628
DriI GACNNNNNGTC 1 cut(s) 535
EaeI YGGCCR 1 cut(s) 501
EagI CGGCCG 1 cut(s) 501
Eam1104I CTCTTC 1 cut(s) 481
Eam1105I GACNNNNNGTC 1 cut(s) 535
EarI CTCTTC 1 cut(s) 481
EclXI CGGCCG 1 cut(s) 501
Eco147I AGGCCT 1 cut(s) 19
Eco24I GRGCYC 2 cut(s) 554, 708
Eco31I GGTCTC 1 cut(s) 263
Eco52I CGGCCG 1 cut(s) 501
Eco81I CCTNAGG 1 cut(s) 21
Eco88I CYCGRG 1 cut(s) 33
Eco91I GGTNACC 1 cut(s) 556
EcoO65I GGTNACC 1 cut(s) 556
EcoRII CCWGG 1 cut(s) 213
EcoT38I GRGCYC 2 cut(s) 554, 708
Esp3I CGTCTC 1 cut(s) 672
FaqI GGGAC 1 cut(s) 301
FbaI TGATCA 1 cut(s) 429
Fnu4HI GCNGC 4 cut(s) 68, 112, 115, 374
FokI GGATG 2 cut(s) 33, 329
FriOI GRGCYC 2 cut(s) 554, 708
Fsp4HI GCNGC 4 cut(s) 68, 112, 115, 374
GlaI GCGC 1 cut(s) 363
GluI GCNGC 4 cut(s) 68, 112, 115, 374
HaeIII GGCC 3 cut(s) 19, 218, 503
HapII CCGG 8 cut(s) 141, 258, 350, 463, 500, 554, 709, 728
HgaI GACGC 2 cut(s) 553, 582
HhaI GCGC 1 cut(s) 364
Hin1I GRCGYC 1 cut(s) 593
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HinfI GANTC 5 cut(s) 172, 185, 221, 305, 520
HpaII CCGG 8 cut(s) 141, 258, 350, 463, 500, 554, 709, 728
HphI GGTGA 6 cut(s) 44, 247, 331, 364, 488, 568
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 6 cut(s) 63, 156, 184, 268, 622, 672
Hpy188III TCNNGA 4 cut(s) 23, 141, 415, 762
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 7 cut(s) 316, 541, 575, 598, 601, 619, 622
HpyAV CCTTC 2 cut(s) 217, 640
HpyCH4III ACNGT 1 cut(s) 324
HpyCH4IV ACGT 2 cut(s) 240, 493
HpyCH4V TGCA 1 cut(s) 661
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 370, 523
HpyF3I CTNAG 2 cut(s) 21, 548
HpySE526I ACGT 2 cut(s) 240, 493
Hsp92I GRCGYC 1 cut(s) 593
HspAI GCGC 1 cut(s) 362
Kpn2I TCCGGA 1 cut(s) 140
Ksp22I TGATCA 1 cut(s) 429
Kzo9I GATC 5 cut(s) 37, 179, 429, 507, 628
LmnI GCTCC 2 cut(s) 402, 465
Lsp1109I GCAGC 3 cut(s) 123, 126, 385
LweI GCATC 1 cut(s) 432
MaeII ACGT 2 cut(s) 240, 493
MaeIII GTNAC 3 cut(s) 494, 556, 730
MalI GATC 5 cut(s) 39, 181, 431, 509, 630
MboI GATC 5 cut(s) 37, 179, 429, 507, 628
MboII GAAGA 4 cut(s) 367, 379, 468, 750
MflI RGATCY 2 cut(s) 179, 507
MhlI GDGCHC 3 cut(s) 554, 683, 708
MluCI AATT 1 cut(s) 448
MlyI GAGTC 5 cut(s) 166, 179, 215, 314, 529
MmeI TCCRAC 4 cut(s) 179, 213, 252, 600
MroI TCCGGA 1 cut(s) 140
MspI CCGG 8 cut(s) 141, 258, 350, 463, 500, 554, 709, 728
MspR9I CCNGG 4 cut(s) 215, 500, 554, 709
MvaI CCWGG 1 cut(s) 215
MvnI CGCG 1 cut(s) 362
MwoI GCNNNNNNNGC 3 cut(s) 111, 370, 523
NciI CCSGG 3 cut(s) 500, 554, 709
NdeII GATC 5 cut(s) 37, 179, 429, 507, 628
NlaIV GGNNCC 2 cut(s) 404, 467
NmeAIII GCCGAG 4 cut(s) 529, 543, 667, 765
NmuCI GTSAC 3 cut(s) 494, 556, 730
PceI AGGCCT 1 cut(s) 19
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PkrI GCNGC 4 cut(s) 69, 113, 116, 375
PleI GAGTC 5 cut(s) 166, 179, 215, 313, 528
PpsI GAGTC 5 cut(s) 166, 179, 215, 313, 528
Ppu21I YACGTR 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 213
PspEI GGTNACC 1 cut(s) 556
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 2 cut(s) 404, 467
PsuI RGATCY 2 cut(s) 179, 507
RsaI GTAC 2 cut(s) 8, 688
RsaNI GTAC 2 cut(s) 7, 687
SatI GCNGC 4 cut(s) 68, 112, 115, 374
Sau3AI GATC 5 cut(s) 37, 179, 429, 507, 628
ScaI AGTACT 1 cut(s) 688
SchI GAGTC 5 cut(s) 166, 179, 215, 314, 529
ScrFI CCNGG 4 cut(s) 215, 500, 554, 709
SduI GDGCHC 3 cut(s) 554, 683, 708
SetI ASST 6 cut(s) 171, 209, 243, 390, 414, 496
SfaNI GCATC 1 cut(s) 432
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 1 cut(s) 448
SseBI AGGCCT 1 cut(s) 19
SsiI CCGC 2 cut(s) 68, 360
StuI AGGCCT 1 cut(s) 19
StyD4I CCNGG 4 cut(s) 213, 498, 552, 707
TaaI ACNGT 1 cut(s) 324
TaiI ACGT 2 cut(s) 243, 496
TaqI TCGA 1 cut(s) 528
TasI AATT 1 cut(s) 448
TatI WGTACW 2 cut(s) 6, 686
TauI GCSGC 1 cut(s) 70
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 3 cut(s) 494, 556, 730
TseI GCWGC 3 cut(s) 111, 114, 373
Tsp45I GTSAC 3 cut(s) 494, 556, 730
TspGWI ACGGA 1 cut(s) 525
TspRI CASTG 1 cut(s) 327
XcmI CCANNNNNNNNNTGG 1 cut(s) 476
ZrmI AGTACT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.