Rw2G000340

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0010543
Physical Location & Seq
Reverse (-)
329058 .. 330501
1444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G000340.1

Sequence Viewer

Length: 819 bp
ATGGAGTACACATCAAGGCCTCAGGAACAAACCCGAGATCATCATCATCCTCACCATCATCAGAAGCCGCCTGCTTCATATTCTCCTCTAAACTCCTCCACCAGCAATGGCAGCAGCAACAACAACAACAATAACAACTCCGGAGTTCAAACTTGGACAACTCCAAAGCTGACTCCCAGATCTGACTCCAACCCTTACGCCACCACCTTCGTCCAGGCCGACTCCTCCAACTTCAAGCACGTAGTCCAAATGCTCACCGGCTCATCGGAGACCACAACGAAGCAAACTAACAAGCACATACAGGAGTCATCGTCGTCCCCACTGTCATCCAAGAACTTCACCATCCCTCCGGTGAAGACCGCGCTGAAGAAGCAGCAGGGCTTCAAGCTCTACGATAGGAGGAGCCAGAACCTCAAGAACAGCCTGATGATCAATACCCTGATGCCCAATTTTGCCCACCACCGGAGCCAAGCCTCTTCTGGTCTGCTCGACTTTCCGTCGTTGACGTTGAGCCCGATGACCCCATTGAATGACGACCATTTTGCGAAGTCGGCGTCATCGCCGTTGGGGAACTCGTCATGGTCGGAGGATCGGGCTATAGCCGAGAAGGGTTTTTACTTGCACCCGTCTTCGAGAACGAGCTCCAGTACTCCCAGAGAGCCAAAGCCCCAGCTTTTGCCATTGTTTCTGGTCACTTCGCCGAGAGTTTCAGGAAAGACAATTTTGCCCTTGATAATAATATCACATGGGACCCACGTTCTTGCCACGTTAGCAAACAGACGGCTGCATCAGAGATTTTTGACGGAAGTATCACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

272

Amino Acids

30.24

Weight (kDa)

10.16

Isoelectric Point (pI)

54.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 65 - 91 3e-09 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 362
AccIII TCCGGA 1 cut(s) 140
AciI CCGC 2 cut(s) 68, 360
AclWI GGATC 1 cut(s) 597
AcuI CTGAAG 1 cut(s) 386
AcyI GRCGYC 1 cut(s) 554
AfaI GTAC 2 cut(s) 8, 649
AfiI CCNNNNNNNGG 1 cut(s) 462
AgsI TTSAA 4 cut(s) 149, 235, 385, 529
AhdI GACNNNNNGTC 1 cut(s) 496
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 4 cut(s) 169, 388, 642, 673
AluI AGCT 4 cut(s) 169, 388, 642, 673
Alw21I GWGCWC 1 cut(s) 644
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 1 cut(s) 597
Ama87I CYCGRG 1 cut(s) 33
Aor13HI TCCGGA 1 cut(s) 140
AoxI GGCC 2 cut(s) 17, 216
ApeKI GCWGC 4 cut(s) 111, 114, 373, 784
ArsI GACNNNNNNTTYG 4 cut(s) 524, 539, 556, 571
AspLEI GCGC 1 cut(s) 364
AspS9I GGNCC 1 cut(s) 750
AsuHPI GGTGA 4 cut(s) 44, 247, 331, 364
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 1 cut(s) 750
AxyI CCTNAGG 1 cut(s) 21
BaeI ACNNNNGTAYC 1 cut(s) 792
BanII GRGCYC 2 cut(s) 515, 644
BarI GAAGNNNNNNTAC 2 cut(s) 599, 631
BbsI GAAGAC 2 cut(s) 362, 621
Bbv12I GWGCWC 1 cut(s) 644
BbvI GCAGC 4 cut(s) 123, 126, 385, 771
BccI CCATC 2 cut(s) 63, 350
BceAI ACGGC 2 cut(s) 547, 797
BcgI CGANNNNNNTGC 2 cut(s) 524, 558
BciT130I CCWGG 1 cut(s) 215
BclI TGATCA 1 cut(s) 429
BcoDI GTCTC 1 cut(s) 263
BfmI CTRYAG 1 cut(s) 597
BglII AGATCT 1 cut(s) 179
BisI GCNGC 5 cut(s) 68, 112, 115, 374, 785
BlsI GCNGC 5 cut(s) 69, 113, 116, 375, 786
BmcAI AGTACT 1 cut(s) 649
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 1 cut(s) 750
BmeRI GACNNNNNGTC 1 cut(s) 496
BmeT110I CYCGRG 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 750
BmiI GGNNCC 4 cut(s) 404, 467, 751, 752
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 2 cut(s) 432, 796
BpiI GAAGAC 2 cut(s) 362, 621
BpmI CTGGAG 1 cut(s) 628
BpuEI CTTGAG 1 cut(s) 398
BsaAI YACGTR 1 cut(s) 241
BsaBI GATNNNNATC 1 cut(s) 42
BsaHI GRCGYC 1 cut(s) 554
BsaI GGTCTC 1 cut(s) 263
BsaWI WCCGGW 3 cut(s) 140, 349, 462
BsaXI ACNNNNNCTCC 4 cut(s) 296, 326, 331, 361
Bsc4I CCNNNNNNNGG 1 cut(s) 462
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 645
Bse21I CCTNAGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 112
Bse8I GATNNNNATC 1 cut(s) 42
BseAI TCCGGA 1 cut(s) 140
BseBI CCWGG 1 cut(s) 215
BseGI GGATG 3 cut(s) 46, 326, 342
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 462
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 645
BseRI GAGGAG 4 cut(s) 75, 85, 214, 415
BseXI GCAGC 4 cut(s) 123, 126, 385, 771
BseYI CCCAGC 1 cut(s) 669
Bsh1236I CGCG 1 cut(s) 362
BshFI GGCC 2 cut(s) 19, 218
BsiHKAI GWGCWC 1 cut(s) 644
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 4 cut(s) 141, 258, 350, 463
BslFI GGGAC 2 cut(s) 301, 763
BslI CCNNNNNNNGG 1 cut(s) 462
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 2 cut(s) 301, 763
BsnI GGCC 2 cut(s) 19, 218
Bso31I GGTCTC 1 cut(s) 263
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 2 cut(s) 515, 644
Bsp13I TCCGGA 1 cut(s) 140
Bsp143I GATC 4 cut(s) 37, 179, 429, 589
BspACI CCGC 2 cut(s) 68, 360
BspANI GGCC 2 cut(s) 19, 218
BspCNI CTCAG 1 cut(s) 34
BspEI TCCGGA 1 cut(s) 140
BspFNI CGCG 1 cut(s) 362
BspLI GGNNCC 4 cut(s) 404, 467, 751, 752
BspPI GGATC 1 cut(s) 597
BspTNI GGTCTC 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 1 cut(s) 645
BssAI RCCGGY 1 cut(s) 257
BssMI GATC 4 cut(s) 37, 179, 429, 589
BssNI GRCGYC 1 cut(s) 554
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 324
Bst6I CTCTTC 1 cut(s) 481
BstACI GRCGYC 1 cut(s) 554
BstBAI YACGTR 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 3 cut(s) 46, 326, 342
BstFNI CGCG 1 cut(s) 362
BstHHI GCGC 1 cut(s) 364
BstKTI GATC 4 cut(s) 40, 182, 432, 592
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 4 cut(s) 37, 179, 429, 589
BstMWI GCNNNNNNNGC 4 cut(s) 111, 370, 551, 770
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 213
BstSFI CTRYAG 1 cut(s) 597
BstUI CGCG 1 cut(s) 362
BstV1I GCAGC 4 cut(s) 123, 126, 385, 771
BstV2I GAAGAC 2 cut(s) 362, 621
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
Bsu36I CCTNAGG 1 cut(s) 21
BsuRI GGCC 2 cut(s) 19, 218
BtgZI GCGATG 1 cut(s) 543
BtsCI GGATG 3 cut(s) 46, 326, 342
BtsIMutI CAGTG 1 cut(s) 320
Cac8I GCNNGC 1 cut(s) 72
CfoI GCGC 1 cut(s) 364
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 750
CseI GACGC 1 cut(s) 543
Csp6I GTAC 2 cut(s) 7, 648
CviAII CATG 2 cut(s) 579, 746
CviQI GTAC 2 cut(s) 7, 648
DdeI CTNAG 1 cut(s) 21
DpnI GATC 4 cut(s) 39, 181, 431, 591
DpnII GATC 4 cut(s) 37, 179, 429, 589
DriI GACNNNNNGTC 1 cut(s) 496
Eam1104I CTCTTC 1 cut(s) 481
Eam1105I GACNNNNNGTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 481
Ecl136II GAGCTC 1 cut(s) 642
Eco147I AGGCCT 1 cut(s) 19
Eco24I GRGCYC 2 cut(s) 515, 644
Eco31I GGTCTC 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 750
Eco53kI GAGCTC 1 cut(s) 642
Eco57I CTGAAG 1 cut(s) 386
Eco81I CCTNAGG 1 cut(s) 21
Eco88I CYCGRG 1 cut(s) 33
EcoICRI GAGCTC 1 cut(s) 642
EcoO109I RGGNCCY 1 cut(s) 750
EcoRII CCWGG 1 cut(s) 213
EcoT38I GRGCYC 2 cut(s) 515, 644
FaeI CATG 2 cut(s) 582, 749
FaiI YATR 5 cut(s) 79, 299, 580, 599, 747
FaqI GGGAC 2 cut(s) 301, 763
FatI CATG 2 cut(s) 578, 745
FbaI TGATCA 1 cut(s) 429
Fnu4HI GCNGC 5 cut(s) 68, 112, 115, 374, 785
FokI GGATG 3 cut(s) 33, 313, 329
FriOI GRGCYC 2 cut(s) 515, 644
Fsp4HI GCNGC 5 cut(s) 68, 112, 115, 374, 785
GlaI GCGC 1 cut(s) 363
GluI GCNGC 5 cut(s) 68, 112, 115, 374, 785
GsaI CCCAGC 1 cut(s) 673
GsuI CTGGAG 1 cut(s) 628
HaeIII GGCC 2 cut(s) 19, 218
HapII CCGG 4 cut(s) 141, 258, 350, 463
HgaI GACGC 1 cut(s) 543
HhaI GCGC 1 cut(s) 364
Hin1I GRCGYC 1 cut(s) 554
Hin1II CATG 2 cut(s) 582, 749
Hin6I GCGC 1 cut(s) 362
HinP1I GCGC 1 cut(s) 362
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HinfI GANTC 4 cut(s) 172, 185, 221, 305
HpaII CCGG 4 cut(s) 141, 258, 350, 463
HphI GGTGA 4 cut(s) 44, 247, 331, 364
Hpy166II GTNNAC 2 cut(s) 9, 504
Hpy188I TCNGA 5 cut(s) 63, 184, 268, 586, 792
Hpy188III TCNNGA 5 cut(s) 23, 141, 415, 633, 711
Hpy8I GTNNAC 2 cut(s) 9, 504
Hpy99I CGWCG 2 cut(s) 316, 502
HpyAV CCTTC 2 cut(s) 217, 601
HpyCH4III ACNGT 1 cut(s) 324
HpyCH4IV ACGT 5 cut(s) 240, 506, 756, 767, 814
HpyCH4V TGCA 2 cut(s) 622, 787
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 370, 551, 770
HpyF3I CTNAG 1 cut(s) 21
HpySE526I ACGT 5 cut(s) 240, 506, 756, 767, 814
Hsp92I GRCGYC 1 cut(s) 554
Hsp92II CATG 2 cut(s) 582, 749
HspAI GCGC 1 cut(s) 362
KflI GGGWCCC 1 cut(s) 750
Kpn2I TCCGGA 1 cut(s) 140
Ksp22I TGATCA 1 cut(s) 429
Kzo9I GATC 4 cut(s) 37, 179, 429, 589
LmnI GCTCC 3 cut(s) 402, 465, 647
Lsp1109I GCAGC 4 cut(s) 123, 126, 385, 771
LweI GCATC 2 cut(s) 432, 796
MaeII ACGT 5 cut(s) 240, 506, 756, 767, 814
MaeIII GTNAC 1 cut(s) 691
MalI GATC 4 cut(s) 39, 181, 431, 591
MboI GATC 4 cut(s) 37, 179, 429, 589
MboII GAAGA 4 cut(s) 367, 379, 468, 621
MflI RGATCY 1 cut(s) 179
MhlI GDGCHC 2 cut(s) 515, 644
MluCI AATT 2 cut(s) 448, 720
MlyI GAGTC 4 cut(s) 166, 179, 215, 314
MmeI TCCRAC 3 cut(s) 213, 252, 564
MroI TCCGGA 1 cut(s) 140
MspI CCGG 4 cut(s) 141, 258, 350, 463
MspR9I CCNGG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 215
MvnI CGCG 1 cut(s) 362
MwoI GCNNNNNNNGC 4 cut(s) 111, 370, 551, 770
NdeII GATC 4 cut(s) 37, 179, 429, 589
NlaIII CATG 2 cut(s) 582, 749
NlaIV GGNNCC 4 cut(s) 404, 467, 751, 752
NmeAIII GCCGAG 2 cut(s) 628, 726
NmuCI GTSAC 1 cut(s) 691
PceI AGGCCT 1 cut(s) 19
PcsI WCGNNNNNNNCGW 2 cut(s) 216, 512
PkrI GCNGC 5 cut(s) 69, 113, 116, 375, 786
PleI GAGTC 4 cut(s) 166, 179, 215, 313
PpsI GAGTC 4 cut(s) 166, 179, 215, 313
Ppu21I YACGTR 1 cut(s) 241
PpuMI RGGWCCY 1 cut(s) 750
Psp124BI GAGCTC 1 cut(s) 644
Psp5II RGGWCCY 1 cut(s) 750
Psp6I CCWGG 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 669
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 4 cut(s) 404, 467, 751, 752
PspPI GGNCC 1 cut(s) 750
PspPPI RGGWCCY 1 cut(s) 750
PsuI RGATCY 1 cut(s) 179
RsaI GTAC 2 cut(s) 8, 649
RsaNI GTAC 2 cut(s) 7, 648
SacI GAGCTC 1 cut(s) 644
SatI GCNGC 5 cut(s) 68, 112, 115, 374, 785
Sau3AI GATC 4 cut(s) 37, 179, 429, 589
Sau96I GGNCC 1 cut(s) 750
ScaI AGTACT 1 cut(s) 649
SchI GAGTC 4 cut(s) 166, 179, 215, 314
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 2 cut(s) 515, 644
SfaNI GCATC 2 cut(s) 432, 796
SfcI CTRYAG 1 cut(s) 597
SinI GGWCC 1 cut(s) 750
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 2 cut(s) 448, 720
SseBI AGGCCT 1 cut(s) 19
SsiI CCGC 2 cut(s) 68, 360
SstI GAGCTC 1 cut(s) 644
StuI AGGCCT 1 cut(s) 19
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 324
TaiI ACGT 5 cut(s) 243, 509, 759, 770, 817
TaqI TCGA 2 cut(s) 489, 632
TasI AATT 2 cut(s) 448, 720
TatI WGTACW 2 cut(s) 6, 647
TauI GCSGC 1 cut(s) 70
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 1 cut(s) 691
TseI GCWGC 4 cut(s) 111, 114, 373, 784
Tsp45I GTSAC 1 cut(s) 691
TspDTI ATGAA 1 cut(s) 66
TspGWI ACGGA 2 cut(s) 486, 818
TspRI CASTG 1 cut(s) 327
VpaK11BI GGWCC 1 cut(s) 750
XcmI CCANNNNNNNNNTGG 1 cut(s) 476
ZrmI AGTACT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.