Rmu_ssc0000238.1_g000025

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000238.1
OG0010543
Physical Location & Seq
Reverse (-)
106981 .. 107889
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000238.1_g000025.1.cds

Sequence Viewer

Length: 696 bp
ctgactcccagatctgactccaacccttacgccaccaccttcgtccaggccgactcctccaacttcaagcacgtagtccaaatgctcaccggctcattggagaccacaacgaagcaaactaacaagcacacacatgagtcatcgtcgtccccactatcatccaagaaattcaccatccctccgccgcgttactcggccgagatcttgtcgccgagtctgctcgactttccgtcgctgacgctgagcccgatgaccccattgaatgacgaccattttgacaagtcggcgtcgtcgccgttggggaactcgtcggaggaggaggatcgggctatagccgagaagggtttttatttgcacccgtctccgagaacgagcaccagtactcccagagagccagagccccggcttttgccattgtttccggtcacttcgccaagagtttcagggaaaagggtaatgggttatggatggttttcaatcacaggtactgatcttttggagaggatctcggtagcgttagtgatggtttgggcggaggagaaggagaggagagagaagaagaagaatagtgaggttgaagaagaagaagaagaagaagaaaccaatttttttttatttcttgggagagagtcaccatcgtcggactggtcttgggctagaagaaaatcccaaacgaagaagaagaagaagaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

231

Amino Acids

26.15

Weight (kDa)

7.17

Isoelectric Point (pI)

64.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 187
AciI CCGC 3 cut(s) 182, 185, 533
AclWI GGATC 2 cut(s) 330, 512
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 1 cut(s) 167
AcyI GRCGYC 1 cut(s) 287
AfaI GTAC 2 cut(s) 382, 487
AgsI TTSAA 4 cut(s) 67, 262, 477, 578
AhdI GACNNNNNGTC 1 cut(s) 229
AjnI CCWGG 1 cut(s) 45
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 2 cut(s) 95, 366
AlwI GGATC 2 cut(s) 330, 512
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 2 cut(s) 48, 195
ApoI RAATTY 1 cut(s) 167
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
AsuC2I CCSGG 1 cut(s) 403
AsuHPI GGTGA 3 cut(s) 79, 163, 624
BanII GRGCYC 2 cut(s) 248, 402
Bbv12I GWGCWC 1 cut(s) 377
BccI CCATC 4 cut(s) 182, 462, 517, 643
BceAI ACGGC 1 cut(s) 280
BciT130I CCWGG 1 cut(s) 47
BcnI CCSGG 1 cut(s) 403
BcoDI GTCTC 2 cut(s) 95, 366
BfaI CTAG 1 cut(s) 657
BfmI CTRYAG 1 cut(s) 330
BglII AGATCT 2 cut(s) 11, 201
BisI GCNGC 1 cut(s) 185
BlpI GCTNAGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 186
BmcAI AGTACT 1 cut(s) 382
Bme1390I CCNGG 2 cut(s) 47, 403
BmeRI GACNNNNNGTC 1 cut(s) 229
BmrFI CCNGG 2 cut(s) 47, 403
BplI GAGNNNNNCTC 2 cut(s) 491, 523
Bpu1102I GCTNAGC 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 403
BsaAI YACGTR 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 287
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 401
BsaWI WCCGGW 1 cut(s) 421
BsaXI ACNNNNNCTCC 4 cut(s) 163, 193, 367, 397
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 378, 650
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 401
BseGI GGATG 3 cut(s) 158, 174, 473
BseMII CTCAG 1 cut(s) 233
BseNI ACTGG 2 cut(s) 378, 650
BseRI GAGGAG 5 cut(s) 46, 329, 332, 551, 562
BseX3I CGGCCG 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 187
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 2 cut(s) 50, 197
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 377
BsiSI CCGG 3 cut(s) 90, 403, 422
BslFI GGGAC 1 cut(s) 133
BsmAI GTCTC 2 cut(s) 95, 366
BsmBI CGTCTC 1 cut(s) 366
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 2 cut(s) 50, 197
Bso31I GGTCTC 1 cut(s) 95
Bsp1286I GDGCHC 3 cut(s) 248, 377, 402
Bsp143I GATC 5 cut(s) 11, 201, 322, 490, 504
Bsp1720I GCTNAGC 1 cut(s) 242
BspACI CCGC 3 cut(s) 182, 185, 533
BspANI GGCC 2 cut(s) 50, 197
BspCNI CTCAG 1 cut(s) 234
BspFNI CGCG 1 cut(s) 187
BspPI GGATC 2 cut(s) 330, 512
BspTNI GGTCTC 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 2 cut(s) 378, 650
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 401
BssMI GATC 5 cut(s) 11, 201, 322, 490, 504
BssNI GRCGYC 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 3 cut(s) 158, 174, 473
BstFNI CGCG 1 cut(s) 187
BstKTI GATC 5 cut(s) 14, 204, 325, 493, 507
BstMAI GTCTC 2 cut(s) 95, 366
BstMBI GATC 5 cut(s) 11, 201, 322, 490, 504
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 2 cut(s) 45, 401
BstSFI CTRYAG 1 cut(s) 330
BstUI CGCG 1 cut(s) 187
BstX2I RGATCY 3 cut(s) 11, 201, 504
BstYI RGATCY 3 cut(s) 11, 201, 504
BstZI CGGCCG 1 cut(s) 195
BsuRI GGCC 2 cut(s) 50, 197
BtsCI GGATG 3 cut(s) 158, 174, 473
CaiI CAGNNNCTG 1 cut(s) 488
Cfr10I RCCGGY 1 cut(s) 89
CseI GACGC 2 cut(s) 247, 276
Csp6I GTAC 2 cut(s) 381, 486
CviAII CATG 1 cut(s) 134
CviQI GTAC 2 cut(s) 381, 486
DdeI CTNAG 1 cut(s) 242
DpnI GATC 5 cut(s) 13, 203, 324, 492, 506
DpnII GATC 5 cut(s) 11, 201, 322, 490, 504
DriI GACNNNNNGTC 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 195
EagI CGGCCG 1 cut(s) 195
Eam1105I GACNNNNNGTC 1 cut(s) 229
EciI GGCGGA 2 cut(s) 171, 548
EclXI CGGCCG 1 cut(s) 195
Eco24I GRGCYC 2 cut(s) 248, 402
Eco31I GGTCTC 1 cut(s) 95
Eco52I CGGCCG 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 45
EcoT38I GRGCYC 2 cut(s) 248, 402
Esp3I CGTCTC 1 cut(s) 366
FaeI CATG 1 cut(s) 137
FaiI YATR 3 cut(s) 135, 332, 465
FaqI GGGAC 1 cut(s) 133
FatI CATG 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 3 cut(s) 145, 161, 480
FriOI GRGCYC 2 cut(s) 248, 402
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 1 cut(s) 657
GluI GCNGC 1 cut(s) 185
HaeIII GGCC 2 cut(s) 50, 197
HapII CCGG 3 cut(s) 90, 403, 422
HgaI GACGC 2 cut(s) 247, 276
Hin1I GRCGYC 1 cut(s) 287
Hin1II CATG 1 cut(s) 137
HinfI GANTC 6 cut(s) 4, 17, 53, 137, 214, 629
HpaII CCGG 3 cut(s) 90, 403, 422
HphI GGTGA 3 cut(s) 79, 163, 624
Hpy188I TCNGA 4 cut(s) 16, 313, 366, 643
Hpy99I CGWCG 6 cut(s) 148, 235, 292, 295, 313, 643
HpyAV CCTTC 3 cut(s) 49, 334, 535
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 1 cut(s) 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 287
Hsp92II CATG 1 cut(s) 137
Kzo9I GATC 5 cut(s) 11, 201, 322, 490, 504
MaeI CTAG 1 cut(s) 657
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 3 cut(s) 188, 424, 630
MalI GATC 5 cut(s) 13, 203, 324, 492, 506
MboI GATC 5 cut(s) 11, 201, 322, 490, 504
MflI RGATCY 3 cut(s) 11, 201, 504
MhlI GDGCHC 3 cut(s) 248, 377, 402
MluCI AATT 2 cut(s) 167, 604
MlyI GAGTC 5 cut(s) 11, 47, 146, 223, 638
MmeI TCCRAC 4 cut(s) 45, 84, 291, 621
MnlI CCTC 9 cut(s) 67, 189, 307, 310, 313, 495, 529, 540, 565
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 3 cut(s) 90, 403, 422
MspR9I CCNGG 2 cut(s) 47, 403
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 217
NciI CCSGG 1 cut(s) 403
NdeII GATC 5 cut(s) 11, 201, 322, 490, 504
NlaIII CATG 1 cut(s) 137
NmeAIII GCCGAG 4 cut(s) 173, 223, 237, 361
NmuCI GTSAC 2 cut(s) 424, 630
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 245
PkrI GCNGC 1 cut(s) 186
PleI GAGTC 5 cut(s) 11, 47, 145, 222, 637
PpsI GAGTC 5 cut(s) 11, 47, 145, 222, 637
Ppu21I YACGTR 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 3 cut(s) 11, 201, 504
RsaI GTAC 2 cut(s) 382, 487
RsaNI GTAC 2 cut(s) 381, 486
RseI CAYNNNNRTG 1 cut(s) 132
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 5 cut(s) 11, 201, 322, 490, 504
ScaI AGTACT 1 cut(s) 382
SchI GAGTC 5 cut(s) 11, 47, 146, 223, 638
ScrFI CCNGG 2 cut(s) 47, 403
SduI GDGCHC 3 cut(s) 248, 377, 402
SetI ASST 4 cut(s) 41, 75, 487, 576
SfcI CTRYAG 1 cut(s) 330
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 2 cut(s) 167, 604
SsiI CCGC 3 cut(s) 182, 185, 533
SspMI CTAG 1 cut(s) 657
StyD4I CCNGG 2 cut(s) 45, 401
TaiI ACGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 222
TasI AATT 2 cut(s) 167, 604
TatI WGTACW 1 cut(s) 380
TauI GCSGC 1 cut(s) 187
TseFI GTSAC 2 cut(s) 424, 630
Tsp45I GTSAC 2 cut(s) 424, 630
TspGWI ACGGA 1 cut(s) 219
XapI RAATTY 1 cut(s) 167
XcmI CCANNNNNNNNNTGG 1 cut(s) 642
XspI CTAG 1 cut(s) 657
ZrmI AGTACT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.