Rmu_sc0018119.1_g000002

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018119.1
OG0010543
Physical Location & Seq
Forward (+)
939 .. 1255
317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018119.1_g000002.1.cds

Sequence Viewer

Length: 317 bp
ctgactcccagatctgactccaacccttacgccaccaccttcatccaagccgactcctccaacttcaagcacgtagtccaaatgctcatcggctcatcggagaccacaacgaagcaaactaacaagcacacacgtgcgtcatcgtcgtccccattgtcatccaagaacttcaccatccctccggtgaagaccgcgccgaagatgcagcagggcttcaagctttacgagaggaggctccagaacctcaagaacagcctgatgatcaataccctgatgcccaattttgcccaccaccggagccaagcctcttctgggtt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

105

Amino Acids

11.7

Weight (kDa)

10.56

Isoelectric Point (pI)

57.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 194
AciI CCGC 1 cut(s) 192
AcvI CACGTG 1 cut(s) 134
AfiI CCNNNNNNNGG 2 cut(s) 294, 312
AflIII ACRYGT 1 cut(s) 131
AgsI TTSAA 2 cut(s) 67, 217
AleI CACNNNNGTG 1 cut(s) 132
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 205
AspLEI GCGC 1 cut(s) 196
AsuHPI GGTGA 2 cut(s) 163, 196
BbrPI CACGTG 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 217
BccI CCATC 1 cut(s) 182
BclI TGATCA 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 95
BglII AGATCT 1 cut(s) 11
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
BmiI GGNNCC 2 cut(s) 236, 299
BmsI GCATC 2 cut(s) 192, 264
BpiI GAAGAC 1 cut(s) 194
BpmI CTGGAG 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 230
BsaAI YACGTR 2 cut(s) 73, 134
BsaI GGTCTC 1 cut(s) 95
BsaWI WCCGGW 2 cut(s) 181, 294
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 312
BseGI GGATG 3 cut(s) 42, 158, 174
BseLI CCNNNNNNNGG 2 cut(s) 294, 312
BseRI GAGGAG 2 cut(s) 46, 244
BseXI GCAGC 1 cut(s) 217
Bsh1236I CGCG 1 cut(s) 194
BsiSI CCGG 2 cut(s) 182, 295
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 294, 312
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 133
Bso31I GGTCTC 1 cut(s) 95
Bsp143I GATC 2 cut(s) 11, 261
BspACI CCGC 1 cut(s) 192
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 2 cut(s) 236, 299
BspTNI GGTCTC 1 cut(s) 95
BssMI GATC 2 cut(s) 11, 261
Bst6I CTCTTC 1 cut(s) 313
BstBAI YACGTR 2 cut(s) 73, 134
BstF5I GGATG 3 cut(s) 42, 158, 174
BstFNI CGCG 1 cut(s) 194
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 2 cut(s) 14, 264
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 2 cut(s) 11, 261
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BtsCI GGATG 3 cut(s) 42, 158, 174
CfoI GCGC 1 cut(s) 196
CseI GACGC 1 cut(s) 126
CviJI RGCY 8 cut(s) 50, 93, 213, 220, 235, 255, 300, 305
CviKI_1 RGCY 8 cut(s) 50, 93, 213, 220, 235, 255, 300, 305
DpnI GATC 2 cut(s) 13, 263
DpnII GATC 2 cut(s) 11, 261
Eam1104I CTCTTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 313
Eco31I GGTCTC 1 cut(s) 95
Eco72I CACGTG 1 cut(s) 134
FaqI GGGAC 1 cut(s) 133
FbaI TGATCA 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 206
FokI GGATG 3 cut(s) 29, 145, 161
Fsp4HI GCNGC 1 cut(s) 206
GlaI GCGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 206
GsuI CTGGAG 1 cut(s) 221
HapII CCGG 2 cut(s) 182, 295
HgaI GACGC 1 cut(s) 126
HhaI GCGC 1 cut(s) 196
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 3 cut(s) 4, 17, 53
HpaII CCGG 2 cut(s) 182, 295
HphI GGTGA 2 cut(s) 163, 196
Hpy188I TCNGA 2 cut(s) 16, 100
Hpy188III TCNNGA 2 cut(s) 238, 247
Hpy99I CGWCG 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 49
HpyCH4IV ACGT 2 cut(s) 72, 133
HpyCH4V TGCA 1 cut(s) 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpySE526I ACGT 2 cut(s) 72, 133
HspAI GCGC 1 cut(s) 194
Ksp22I TGATCA 1 cut(s) 261
Kzo9I GATC 2 cut(s) 11, 261
LmnI GCTCC 2 cut(s) 240, 297
LpnPI CCDG 8 cut(s) 22, 194, 195, 251, 269, 284, 297, 308
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 2 cut(s) 192, 264
MaeII ACGT 2 cut(s) 72, 133
MalI GATC 2 cut(s) 13, 263
MboI GATC 2 cut(s) 11, 261
MboII GAAGA 3 cut(s) 199, 211, 300
MflI RGATCY 1 cut(s) 11
MluCI AATT 1 cut(s) 280
MlyI GAGTC 2 cut(s) 11, 47
MmeI TCCRAC 2 cut(s) 45, 84
MnlI CCTC 6 cut(s) 67, 189, 222, 225, 254, 316
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 2 cut(s) 182, 295
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 202
NdeII GATC 2 cut(s) 11, 261
NlaIV GGNNCC 2 cut(s) 236, 299
OliI CACNNNNGTG 1 cut(s) 132
PkrI GCNGC 1 cut(s) 207
PleI GAGTC 2 cut(s) 11, 47
PmaCI CACGTG 1 cut(s) 134
PmlI CACGTG 1 cut(s) 134
PpsI GAGTC 2 cut(s) 11, 47
Ppu21I YACGTR 2 cut(s) 73, 134
PspCI CACGTG 1 cut(s) 134
PspN4I GGNNCC 2 cut(s) 236, 299
PsuI RGATCY 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 132
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 2 cut(s) 11, 261
SchI GAGTC 2 cut(s) 11, 47
SetI ASST 5 cut(s) 41, 75, 136, 222, 246
SfaNI GCATC 2 cut(s) 192, 264
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 1 cut(s) 280
SsiI CCGC 1 cut(s) 192
TaiI ACGT 2 cut(s) 75, 136
TasI AATT 1 cut(s) 280
TseI GCWGC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.