Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008335

Physical Location & Seq

Genomic Coordinates Forward (+)

23064127 .. 23069932

Gene Structure 5806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G276000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGATGACCCTTTCTTCAATCTCTCGGTTCATGTCCTCCTCAGTTGGCCTCAAAAGTCACAAATTCTCAATCTTGCGGTTCTCTTCTGCCTCAGATGGGGAGATAGTCTACAATCGGCTGCAGGAAAATGGTGGCAACATTGAGCAAACCCTTTCATCAATCAATGTCCATTTGGACTCCAAATGTGTAAGTCAGGTCTTAAAGAGATGCTATCCTAGCCAATCCCAAATGGGTCTTAGGTTTTTCATATGGGCTGGTCTTCACTCCAGTTATAGGCATAGCTATTTTATGTACAGCCAAGCTTGTGAACTGTGTGAGATTAAGCTAAACCCAAGTGTGATTTTTGATGTTTTGGAAGCTTATAGAATTGAAGGGCGCGTTGTTAGTCTTAAGGCATTTAAGGTTGTCTTTAATTTATGTAAAGAAGCTAAGCTTGCCGATGAAGCTTTGAGGGTATTAAGGAAAATACCGGATTTTGGTTTGCGTCCAGATACTACTGTGTATAATGTTGTTATAAGGTTGTTTTGCGATAAAGGTAATATGAATGTGGCTGAAAGATTGGTGAAAGAGATGGGCTTGGTGGATCTTTTGCCTGATTTGATCACATACGTGGTAATGATTAATGGGTTTTGTAAGGTGGGTCGGTTAGATGATGCTTGTGGGTTGTTTAAGGTTATGAAGGGACATGGTTGTTTGCCTAATGCTGTGGTGTACTCGGCACTTCTTGATGGGTTTTGTAGGTCTGAGAATATGGAGAGAGCTTTGGAGTTATTGACAGAGATGGAGAAGGAAGGTGGGGATTGTAGCCCTAATGTAGTAACATATACGTCTGTGATTCAAAAGCTTTGTGACAAAGGTCGGTCGAAGGAGGCGTTGGTTATTTTGGACCGAATGGAAGCTTGTGGATGTGCCCCAAGTCGCGTAACGGTTAGTATTCTAATTAAGAGTTTTTGCGTGGAGGATCAAGTTGAAGAGGCTTATAAACTGATTGATAGAGTTGTTGTGGGACGTAGTGTTACATATAGTGATTGCTATAGCTCTCTTGTTGTGTCTTTGGCAAGAGGTAGAAAACCTGAAGAGGCAGAGAAGGTCTTGAGGATGATGCTTGATAGTGGGTTGAAACCAAATAGTTTGGCGTGTAGCATTATGTTAAAAAAGGTTTGTTTGGAAGGACGGGTGATAGATGGATTTTGCTTGTTTGATGAACTTGAGAAGATGGAATGCTTGTCTTCCATTGACTCTGATACTTACTCAATTCTTTTAGTGGGCCTTTGTGAGCAAAGGCATTTATTGGAGGCTGCAAAGCTGGCAAGGCTAATGCTAAACAAAGGAATTAAGCTGAAAGCTCCTTATGTTGACAGTATAGCTGAGATCCTGAAGAAATCCGGAGATGAGGAGTTAGTTAAGCATGTGAGTAGAATTGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

477

Amino Acids

53.23

Weight (kDa)

7.96

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47360
fragaria_vesca	FvH4_5g19630 FvH4_5g19630
malus_domestica	MD04G1061400.v1.1 MD06G1055200.v1.1
prunus_persica	Prupe.4G276000_v2.0.a1 Prupe.4G276000_v2.0.a1
pyrus_communis	pycom04g05510 pycom06g04620
rosa_chinensis	RchiOBHm_Chr7g0204361
rosa_laevigata	RLG00000003470
rosa_multiflora	Rmu_sc0012268.1_g000001 Rmu_sc0012666.1_g000002
rosa_roxburghii	Rroxscaffold_3G00253200
rosa_rugosa	Rorug07G0082000 Rorug07G0082100 Rorug07G0082200 Rorug07G0082300 Rorug07G0082400 Rorug07G0082500
rosa_samantha	Rh7AG212700 Rh7DG220100
rosa_wichuraiana	Rw7G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	515, 981
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	2 cut(s)	378, 921
AccIII	TCCGGA	1 cut(s)	1385
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	3 cut(s)	591, 969, 1366
AcsI	RAATTY	1 cut(s)	62
AcuI	CTGAAG	2 cut(s)	1095, 1397
AfaI	GTAC	2 cut(s)	293, 713
AfiI	CCNNNNNNNGG	3 cut(s)	96, 273, 476
AflII	CTTAAG	1 cut(s)	389
AgsI	TTSAA	5 cut(s)	18, 371, 839, 971, 1120
AjuI	GAANNNNNNNTTGG	2 cut(s)	857, 889
AleI	CACNNNNGTG	1 cut(s)	608
AlwI	GGATC	3 cut(s)	591, 969, 1366
Aor13HI	TCCGGA	1 cut(s)	1385
AoxI	GGCC	2 cut(s)	46, 1267
ApeKI	GCWGC	2 cut(s)	118, 1298
ApoI	RAATTY	1 cut(s)	62
AseI	ATTAAT	1 cut(s)	621
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	2 cut(s)	886, 1267
AsuHPI	GGTGA	2 cut(s)	574, 1189
AvaII	GGWCC	1 cut(s)	886
BaeGI	GKGCMC	1 cut(s)	913
BaeI	ACNNNNGTAYC	2 cut(s)	483, 516
BbsI	GAAGAC	2 cut(s)	251, 1221
BbvI	GCAGC	2 cut(s)	105, 1285
BccI	CCATC	6 cut(s)	89, 565, 722, 775, 1178, 1210
BclI	TGATCA	1 cut(s)	600
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	2 cut(s)	119, 1033
BfrI	CTTAAG	1 cut(s)	389
BisI	GCNGC	2 cut(s)	119, 1299
BlpI	GCTNAGC	1 cut(s)	429
BlsI	GCNGC	2 cut(s)	120, 1300
Bme18I	GGWCC	1 cut(s)	886
BmgT120I	GGNCC	2 cut(s)	886, 1267
BmsI	GCATC	3 cut(s)	197, 643, 1092
BoxI	GACNNNNGTC	1 cut(s)	855
BpiI	GAAGAC	2 cut(s)	251, 1221
BpmI	CTGGAG	1 cut(s)	250
Bpu1102I	GCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	2 cut(s)	1114, 1229
BsaAI	YACGTR	1 cut(s)	610
BsaWI	WCCGGW	2 cut(s)	469, 1385
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 273, 476
Bse1I	ACTGG	1 cut(s)	267
BseAI	TCCGGA	1 cut(s)	1385
BseGI	GGATG	2 cut(s)	911, 1104
BseLI	CCNNNNNNNGG	3 cut(s)	96, 273, 476
BseMII	CTCAG	4 cut(s)	54, 105, 735, 1359
BseNI	ACTGG	1 cut(s)	267
BseRI	GAGGAG	2 cut(s)	28, 1409
BseSI	GKGCMC	1 cut(s)	913
BseXI	GCAGC	2 cut(s)	105, 1285
Bsh1236I	CGCG	2 cut(s)	378, 921
Bsh1285I	CGRYCG	1 cut(s)	863
BshFI	GGCC	2 cut(s)	48, 1269
BsiEI	CGRYCG	1 cut(s)	863
BsiSI	CCGG	2 cut(s)	470, 1386
BslFI	GGGAC	2 cut(s)	696, 1020
BslI	CCNNNNNNNGG	3 cut(s)	96, 273, 476
BsmFI	GGGAC	2 cut(s)	696, 1020
BsmI	GAATGC	1 cut(s)	1226
BsnI	GGCC	2 cut(s)	48, 1269
Bsp1286I	GDGCHC	1 cut(s)	913
Bsp13I	TCCGGA	1 cut(s)	1385
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	4 cut(s)	583, 600, 961, 1371
Bsp1720I	GCTNAGC	1 cut(s)	429
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	2 cut(s)	48, 1269
BspCNI	CTCAG	4 cut(s)	53, 104, 736, 1360
BspEI	TCCGGA	1 cut(s)	1385
BspFNI	CGCG	2 cut(s)	378, 921
BspMAI	CTGCAG	1 cut(s)	123
BspPI	GGATC	3 cut(s)	591, 969, 1366
BspTI	CTTAAG	1 cut(s)	389
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	267
BssMI	GATC	4 cut(s)	583, 600, 961, 1371
Bst4CI	ACNGT	4 cut(s)	312, 499, 928, 1361
Bst6I	CTCTTC	3 cut(s)	88, 966, 1071
BstAFI	CTTAAG	1 cut(s)	389
BstAUI	TGTACA	1 cut(s)	291
BstBAI	YACGTR	1 cut(s)	610
BstC8I	GCNNGC	2 cut(s)	435, 1308
BstDEI	CTNAG	6 cut(s)	40, 91, 236, 429, 744, 1368
BstF5I	GGATG	2 cut(s)	911, 1104
BstFNI	CGCG	2 cut(s)	378, 921
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	4 cut(s)	586, 603, 964, 1374
BstMBI	GATC	4 cut(s)	583, 600, 961, 1371
BstMCI	CGRYCG	1 cut(s)	863
BstMWI	GCNNNNNNNGC	5 cut(s)	216, 434, 443, 1307, 1312
BstNSI	RCATGY	1 cut(s)	1412
BstPAI	GACNNNNGTC	1 cut(s)	855
BstSFI	CTRYAG	2 cut(s)	119, 1033
BstSLI	GKGCMC	1 cut(s)	913
BstUI	CGCG	2 cut(s)	378, 921
BstV1I	GCAGC	2 cut(s)	105, 1285
BstV2I	GAAGAC	2 cut(s)	251, 1221
BstX2I	RGATCY	2 cut(s)	583, 1371
BstYI	RGATCY	2 cut(s)	583, 1371
BsuRI	GGCC	2 cut(s)	48, 1269
BtsCI	GGATG	2 cut(s)	911, 1104
Cac8I	GCNNGC	2 cut(s)	435, 1308
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	2 cut(s)	886, 1267
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	2 cut(s)	292, 712
CviAII	CATG	3 cut(s)	31, 686, 1409
CviQI	GTAC	2 cut(s)	292, 712
DdeI	CTNAG	6 cut(s)	40, 91, 236, 429, 744, 1368
DpnI	GATC	4 cut(s)	585, 602, 963, 1373
DpnII	GATC	4 cut(s)	583, 600, 961, 1371
Eam1104I	CTCTTC	3 cut(s)	88, 966, 1071
EarI	CTCTTC	3 cut(s)	88, 966, 1071
Eco47I	GGWCC	1 cut(s)	886
Eco57I	CTGAAG	2 cut(s)	1095, 1397
FaeI	CATG	3 cut(s)	34, 689, 1412
FalI	AAGNNNNNCTT	4 cut(s)	392, 424, 417, 449
FaqI	GGGAC	2 cut(s)	696, 1020
FatI	CATG	3 cut(s)	30, 685, 1408
FauNDI	CATATG	1 cut(s)	248
FbaI	TGATCA	1 cut(s)	600
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	119, 1299
FokI	GGATG	2 cut(s)	918, 1111
Fsp4HI	GCNGC	2 cut(s)	119, 1299
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	2 cut(s)	119, 1299
GsuI	CTGGAG	1 cut(s)	250
HaeIII	GGCC	2 cut(s)	48, 1269
HapII	CCGG	2 cut(s)	470, 1386
HgaI	GACGC	1 cut(s)	473
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	3 cut(s)	34, 689, 1412
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HincII	GTYRAC	1 cut(s)	1357
HindII	GTYRAC	1 cut(s)	1357
HindIII	AAGCTT	6 cut(s)	300, 357, 431, 444, 842, 897
HinfI	GANTC	3 cut(s)	176, 835, 1238
HpaII	CCGG	2 cut(s)	470, 1386
HphI	GGTGA	2 cut(s)	574, 1189
Hpy166II	GTNNAC	4 cut(s)	109, 308, 712, 1357
Hpy188I	TCNGA	3 cut(s)	94, 745, 1243
Hpy188III	TCNNGA	5 cut(s)	488, 725, 1093, 1375, 1386
Hpy8I	GTNNAC	4 cut(s)	109, 308, 712, 1357
HpyAV	CCTTC	7 cut(s)	365, 673, 781, 785, 859, 1081, 1163
HpyCH4III	ACNGT	4 cut(s)	312, 499, 928, 1361
HpyCH4IV	ACGT	3 cut(s)	609, 827, 1009
HpyCH4V	TGCA	3 cut(s)	121, 1301, 1424
HpyF10VI	GCNNNNNNNGC	5 cut(s)	216, 434, 443, 1307, 1312
HpyF3I	CTNAG	6 cut(s)	40, 91, 236, 429, 744, 1368
HpySE526I	ACGT	3 cut(s)	609, 827, 1009
Hsp92II	CATG	3 cut(s)	34, 689, 1412
HspAI	GCGC	1 cut(s)	376
Kpn2I	TCCGGA	1 cut(s)	1385
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	4 cut(s)	583, 600, 961, 1371
LmnI	GCTCC	1 cut(s)	1351
Lsp1109I	GCAGC	2 cut(s)	105, 1285
LweI	GCATC	3 cut(s)	197, 643, 1092
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	3 cut(s)	609, 827, 1009
MaeIII	GTNAC	5 cut(s)	56, 817, 848, 922, 1015
MalI	GATC	4 cut(s)	585, 602, 963, 1373
MboI	GATC	4 cut(s)	583, 600, 961, 1371
MboII	GAAGA	8 cut(s)	6, 75, 251, 983, 1088, 1221, 1225, 1390
MflI	RGATCY	2 cut(s)	583, 1371
MhlI	GDGCHC	1 cut(s)	913
MluCI	AATT	7 cut(s)	62, 366, 412, 939, 1254, 1332, 1419
MlyI	GAGTC	2 cut(s)	170, 1232
MroI	TCCGGA	1 cut(s)	1385
MslI	CAYNNNNRTG	1 cut(s)	608
MspCI	CTTAAG	1 cut(s)	389
MspI	CCGG	2 cut(s)	470, 1386
Mva1269I	GAATGC	1 cut(s)	1226
MvnI	CGCG	2 cut(s)	378, 921
MwoI	GCNNNNNNNGC	5 cut(s)	216, 434, 443, 1307, 1312
NdeI	CATATG	1 cut(s)	248
NdeII	GATC	4 cut(s)	583, 600, 961, 1371
NlaIII	CATG	3 cut(s)	34, 689, 1412
NmeAIII	GCCGAG	1 cut(s)	695
NmuCI	GTSAC	2 cut(s)	56, 848
NspI	RCATGY	1 cut(s)	1412
OliI	CACNNNNGTG	1 cut(s)	608
PcsI	WCGNNNNNNNCGW	1 cut(s)	869
PctI	GAATGC	1 cut(s)	1226
PfeI	GAWTC	1 cut(s)	835
PkrI	GCNGC	2 cut(s)	120, 1300
PleI	GAGTC	2 cut(s)	170, 1232
PpsI	GAGTC	2 cut(s)	170, 1232
Ppu21I	YACGTR	1 cut(s)	610
PshAI	GACNNNNGTC	1 cut(s)	855
PshBI	ATTAAT	1 cut(s)	621
PsiI	TTATAA	2 cut(s)	515, 981
PspPI	GGNCC	2 cut(s)	886, 1267
PstI	CTGCAG	1 cut(s)	123
PsuI	RGATCY	2 cut(s)	583, 1371
RsaI	GTAC	2 cut(s)	293, 713
RsaNI	GTAC	2 cut(s)	292, 712
RseI	CAYNNNNRTG	1 cut(s)	608
SatI	GCNGC	2 cut(s)	119, 1299
Sau3AI	GATC	4 cut(s)	583, 600, 961, 1371
Sau96I	GGNCC	2 cut(s)	886, 1267
SchI	GAGTC	2 cut(s)	170, 1232
SduI	GDGCHC	1 cut(s)	913
SfaNI	GCATC	3 cut(s)	197, 643, 1092
SfcI	CTRYAG	2 cut(s)	119, 1033
SinI	GGWCC	1 cut(s)	886
SmiMI	CAYNNNNRTG	1 cut(s)	608
SmlI	CTYRAG	3 cut(s)	389, 1093, 1208
SmoI	CTYRAG	3 cut(s)	389, 1093, 1208
Sse9I	AATT	7 cut(s)	62, 366, 412, 939, 1254, 1332, 1419
SsiI	CCGC	1 cut(s)	76
SspMI	CTAG	1 cut(s)	216
TaaI	ACNGT	4 cut(s)	312, 499, 928, 1361
TaiI	ACGT	3 cut(s)	612, 830, 1012
TaqI	TCGA	1 cut(s)	863
TaqII	GACCGA	2 cut(s)	849, 903
TasI	AATT	7 cut(s)	62, 366, 412, 939, 1254, 1332, 1419
TatI	WGTACW	2 cut(s)	291, 711
TfiI	GAWTC	1 cut(s)	835
TseFI	GTSAC	2 cut(s)	56, 848
TseI	GCWGC	2 cut(s)	118, 1298
Tsp45I	GTSAC	2 cut(s)	56, 848
TspDTI	ATGAA	7 cut(s)	19, 144, 235, 456, 557, 692, 1218
Vha464I	CTTAAG	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	886
VspI	ATTAAT	1 cut(s)	621
XapI	RAATTY	1 cut(s)	62
XceI	RCATGY	1 cut(s)	1412
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.