Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008335

Physical Location & Seq

Genomic Coordinates Reverse (-)

6501073 .. 6502393

Gene Structure 1321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0082500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGTACCCAGCTACTTCTTCTTCACTTTCCTGGTCTCTGTGCTTTTATTCAAGAGCATGTTCCTCTGCTAAACCTTCGGGGCAGCTAACGGCTCGTGATGCATATAGTTTCTTGCGTCACAAATTTCCTACAGTAAGTTGGGGAAAATTAATATGGTCTAAATTTATTCCTCCCCGCATGTCCCTCTTGGCTTGGAAAGTTTTAAAAGGACGTGTTCTTTCAGAGGATTTTCTTCAAAGACGTGGGGTATCTCTTGCATCAAGATGTGTTCTTTGTCATCATCACGGTGAGTCCATTGATCATATTTTTTTGTCTTGTTCCTTCGCGACAACAATTTGGCGGCGTATGGCAGAGTTGTTTGATTTGGGTGGGCTTCATGGTTCTCTTGTGGACATATTGCATCATGGGTTGGCTGGTCGTAGTCCCCAACTACGTGAACTTTGGCTTGCATCATTTGTGGTGGTGCTATGGTGTATCTGGCACTTCAGAAACAAGGTAAAATATGATGGAATTATTGTCGAGCTACCCAAGGCATATCAATTGATTAATGGACAGATCTTAGCTTCCAGTAAGCTTGGTTCAGGTACTATGTTTAATAATGTGCAAGAGCTAATTGTTTTGAAAAGGTTTGGGGCTACATGCAGGCCACGTAGAGCTCCTTCAATCATTGAGGTTAATTGGATCCCTCCTATAATGGGTTGGGTGAAAATTAATACAGATGGCTCTTGGAGGAGTGCCTCAGGTCAGGCTGGCTATGGTGGTGTGTTTCGGGATTTCAAGGGTACATTTCTTGGTTGCTTTTGTTCTAATCTTGACATTCCAAGTTCAGTGGCAGCTGAGGTAATGGCGGTTATTAAAGCAATTGAGCTAGCTTGGATTCGAGATTGGAAACATGTGTGGTTGGAGGTTGACTCAACTCTAGTTCTTCATTTTCTTAAATCACCCAATTTGGTGCCTTGGCAAATTCGAGTGGAATGGGGTAACTGCTTACACCGCATCTCTCAAATGCAATTCCGGTGCTCTCATATATTTCGGGAAGGGAATCAAGTTGCAGATGCTCTTGCAAACTTTGGTCTCACTTCAGATACTATGGTTTGGTGGGACTCGCCCTCGGATTTTGTTGCTTCTATTTGCAATAGAGATTTTATGGGGCTTCCTAATTTTCGCTTTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

391

Amino Acids

44.42

Weight (kDa)

9.47

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	31 - 113	5.5e-25	zinc-binding in reverse transcriptase
RVT_3	PF13456	238 - 357	5.4e-21	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47360
fragaria_vesca	FvH4_5g19630 FvH4_5g19630
malus_domestica	MD04G1061400.v1.1 MD06G1055200.v1.1
prunus_persica	Prupe.4G276000_v2.0.a1 Prupe.4G276000_v2.0.a1
pyrus_communis	pycom04g05510 pycom06g04620
rosa_chinensis	RchiOBHm_Chr7g0204361
rosa_laevigata	RLG00000003470
rosa_multiflora	Rmu_sc0012268.1_g000001 Rmu_sc0012666.1_g000002
rosa_roxburghii	Rroxscaffold_3G00253200
rosa_rugosa	Rorug07G0082000 Rorug07G0082100 Rorug07G0082200 Rorug07G0082300 Rorug07G0082400 Rorug07G0082500
rosa_samantha	Rh7AG212700 Rh7DG220100
rosa_wichuraiana	Rw7G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	952
AccII	CGCG	1 cut(s)	326
AciI	CCGC	4 cut(s)	175, 340, 848, 994
AclWI	GGATC	2 cut(s)	676, 689
AcsI	RAATTY	3 cut(s)	122, 161, 963
AcuI	CTGAAG	2 cut(s)	469, 1065
AfaI	GTAC	3 cut(s)	5, 586, 784
AfiI	CCNNNNNNNGG	1 cut(s)	695
AflIII	ACRYGT	2 cut(s)	211, 892
AgsI	TTSAA	5 cut(s)	51, 236, 622, 663, 778
AjiI	CACGTC	2 cut(s)	212, 242
AjnI	CCWGG	1 cut(s)	29
Alw21I	GWGCWC	2 cut(s)	658, 1022
Alw26I	GTCTC	2 cut(s)	39, 1079
AlwI	GGATC	2 cut(s)	676, 689
AoxI	GGCC	1 cut(s)	644
ApeKI	GCWGC	2 cut(s)	82, 833
ApoI	RAATTY	3 cut(s)	122, 161, 963
AseI	ATTAAT	3 cut(s)	149, 546, 711
AsuHPI	GGTGA	3 cut(s)	299, 715, 933
AsuNHI	GCTAGC	1 cut(s)	868
AxyI	CCTNAGG	1 cut(s)	739
BaeI	ACNNNNGTAYC	2 cut(s)	1077, 1110
BamHI	GGATCC	1 cut(s)	681
BanI	GGYRCC	1 cut(s)	952
BanII	GRGCYC	1 cut(s)	658
BarI	GAAGNNNNNNTAC	2 cut(s)	643, 675
BauI	CACGAG	1 cut(s)	93
Bbv12I	GWGCWC	2 cut(s)	658, 1022
BbvCI	CCTCAGC	1 cut(s)	837
BbvI	GCAGC	2 cut(s)	94, 845
BccI	CCATC	2 cut(s)	500, 713
BceAI	ACGGC	1 cut(s)	105
BciT130I	CCWGG	1 cut(s)	31
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	2 cut(s)	39, 1079
BfaI	CTAG	2 cut(s)	869, 920
BfmI	CTRYAG	1 cut(s)	129
BglII	AGATCT	1 cut(s)	555
BisI	GCNGC	3 cut(s)	83, 341, 834
BlsI	GCNGC	3 cut(s)	84, 342, 835
Bme1390I	CCNGG	1 cut(s)	31
BmgBI	CACGTC	2 cut(s)	212, 242
BmiI	GGNNCC	2 cut(s)	683, 954
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	6 cut(s)	88, 266, 409, 458, 1005, 1045
BmtI	GCTAGC	1 cut(s)	872
BplI	GAGNNNNNCTC	2 cut(s)	896, 928
Bpu10I	CCTNAGC	1 cut(s)	837
BsaAI	YACGTR	2 cut(s)	434, 650
BsaI	GGTCTC	2 cut(s)	39, 1079
BsaJI	CCNNGG	3 cut(s)	528, 956, 1110
BsaWI	WCCGGW	1 cut(s)	1014
Bsc4I	CCNNNNNNNGG	1 cut(s)	695
Bse1I	ACTGG	1 cut(s)	567
Bse21I	CCTNAGG	1 cut(s)	739
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	3 cut(s)	528, 956, 1110
BseLI	CCNNNNNNNGG	1 cut(s)	695
BseMII	CTCAG	2 cut(s)	753, 828
BseNI	ACTGG	1 cut(s)	567
BseRI	GAGGAG	1 cut(s)	745
BseXI	GCAGC	2 cut(s)	94, 845
BseYI	CCCAGC	1 cut(s)	7
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	1 cut(s)	646
BshNI	GGYRCC	1 cut(s)	952
BsiHKAI	GWGCWC	2 cut(s)	658, 1022
BsiSI	CCGG	1 cut(s)	1015
BslFI	GGGAC	3 cut(s)	166, 408, 1115
BslI	CCNNNNNNNGG	1 cut(s)	695
BsmAI	GTCTC	2 cut(s)	39, 1079
BsmFI	GGGAC	3 cut(s)	166, 408, 1115
BsnI	GGCC	1 cut(s)	646
Bso31I	GGTCTC	2 cut(s)	39, 1079
Bsp1286I	GDGCHC	2 cut(s)	658, 1022
Bsp143I	GATC	3 cut(s)	298, 555, 681
Bsp68I	TCGCGA	1 cut(s)	326
BspACI	CCGC	4 cut(s)	175, 340, 848, 994
BspANI	GGCC	1 cut(s)	646
BspCNI	CTCAG	2 cut(s)	752, 829
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	2 cut(s)	683, 954
BspOI	GCTAGC	1 cut(s)	872
BspPI	GGATC	2 cut(s)	676, 689
BspT107I	GGYRCC	1 cut(s)	952
BspTNI	GGTCTC	2 cut(s)	39, 1079
BsrI	ACTGG	1 cut(s)	567
BssECI	CCNNGG	3 cut(s)	528, 956, 1110
BssMI	GATC	3 cut(s)	298, 555, 681
BssSI	CACGAG	1 cut(s)	93
BssT1I	CCWWGG	2 cut(s)	528, 956
Bst2BI	CACGAG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	133, 287
BstBAI	YACGTR	2 cut(s)	434, 650
BstC8I	GCNNGC	4 cut(s)	447, 644, 751, 870
BstDEI	CTNAG	3 cut(s)	559, 739, 837
BstFNI	CGCG	1 cut(s)	326
BstKTI	GATC	3 cut(s)	301, 558, 684
BstMAI	GTCTC	2 cut(s)	39, 1079
BstMBI	GATC	3 cut(s)	298, 555, 681
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 993
BstNI	CCWGG	1 cut(s)	31
BstNSI	RCATGY	4 cut(s)	60, 181, 642, 896
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	1 cut(s)	129
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	94, 845
BstX2I	RGATCY	2 cut(s)	555, 681
BstYI	RGATCY	2 cut(s)	555, 681
Bsu36I	CCTNAGG	1 cut(s)	739
BsuRI	GGCC	1 cut(s)	646
BtrI	CACGTC	2 cut(s)	212, 242
BtsIMutI	CAGTG	1 cut(s)	834
BtuMI	TCGCGA	1 cut(s)	326
Cac8I	GCNNGC	4 cut(s)	447, 644, 751, 870
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	3 cut(s)	4, 585, 783
CspCI	CAANNNNNGTGG	2 cut(s)	810, 845
CviAII	CATG	6 cut(s)	57, 178, 377, 404, 639, 893
CviQI	GTAC	3 cut(s)	4, 585, 783
DdeI	CTNAG	3 cut(s)	559, 739, 837
DpnI	GATC	3 cut(s)	300, 557, 683
DpnII	GATC	3 cut(s)	298, 555, 681
DraI	TTTAAA	1 cut(s)	204
Ecl136II	GAGCTC	1 cut(s)	656
Eco130I	CCWWGG	2 cut(s)	528, 956
Eco24I	GRGCYC	1 cut(s)	658
Eco31I	GGTCTC	2 cut(s)	39, 1079
Eco53kI	GAGCTC	1 cut(s)	656
Eco57I	CTGAAG	2 cut(s)	469, 1065
Eco81I	CCTNAGG	1 cut(s)	739
EcoICRI	GAGCTC	1 cut(s)	656
EcoRII	CCWGG	1 cut(s)	29
EcoT14I	CCWWGG	2 cut(s)	528, 956
EcoT22I	ATGCAT	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	658
ErhI	CCWWGG	2 cut(s)	528, 956
FaeI	CATG	6 cut(s)	60, 181, 380, 407, 642, 896
FaqI	GGGAC	3 cut(s)	166, 408, 1115
FatI	CATG	6 cut(s)	56, 177, 376, 403, 638, 892
FauI	CCCGC	1 cut(s)	182
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	3 cut(s)	83, 341, 834
FriOI	GRGCYC	1 cut(s)	658
Fsp4HI	GCNGC	3 cut(s)	83, 341, 834
FspBI	CTAG	2 cut(s)	869, 920
GluI	GCNGC	3 cut(s)	83, 341, 834
GsaI	CCCAGC	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	646
HapII	CCGG	1 cut(s)	1015
HgaI	GACGC	1 cut(s)	104
Hin1II	CATG	6 cut(s)	60, 181, 380, 407, 642, 896
HincII	GTYRAC	1 cut(s)	910
HindII	GTYRAC	1 cut(s)	910
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	5 cut(s)	290, 877, 911, 1042, 1103
HpaII	CCGG	1 cut(s)	1015
HphI	GGTGA	3 cut(s)	299, 715, 933
Hpy166II	GTNNAC	3 cut(s)	391, 437, 910
Hpy188I	TCNGA	4 cut(s)	223, 488, 1084, 1114
Hpy188III	TCNNGA	8 cut(s)	51, 95, 261, 325, 770, 812, 881, 1034
Hpy8I	GTNNAC	3 cut(s)	391, 437, 910
HpyAV	CCTTC	4 cut(s)	84, 331, 669, 1031
HpyCH4III	ACNGT	2 cut(s)	133, 287
HpyCH4IV	ACGT	4 cut(s)	211, 241, 433, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 993
HpyF3I	CTNAG	3 cut(s)	559, 739, 837
HpySE526I	ACGT	4 cut(s)	211, 241, 433, 649
Hsp92II	CATG	6 cut(s)	60, 181, 380, 407, 642, 896
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	298, 555, 681
LmnI	GCTCC	1 cut(s)	661
Lsp1109I	GCAGC	2 cut(s)	94, 845
LweI	GCATC	6 cut(s)	88, 266, 409, 458, 1005, 1045
MaeI	CTAG	2 cut(s)	869, 920
MaeII	ACGT	4 cut(s)	211, 241, 433, 649
MaeIII	GTNAC	2 cut(s)	116, 980
MalI	GATC	3 cut(s)	300, 557, 683
MboI	GATC	3 cut(s)	298, 555, 681
MboII	GAAGA	4 cut(s)	9, 12, 224, 917
MfeI	CAATTG	2 cut(s)	539, 861
MflI	RGATCY	2 cut(s)	555, 681
MhlI	GDGCHC	2 cut(s)	658, 1022
MlyI	GAGTC	3 cut(s)	299, 905, 1097
MmeI	TCCRAC	1 cut(s)	882
Mph1103I	ATGCAT	1 cut(s)	103
MseI	TTAA	8 cut(s)	149, 203, 546, 594, 675, 711, 855, 936
MslI	CAYNNNNRTG	2 cut(s)	262, 285
MspA1I	CMGCKG	1 cut(s)	836
MspI	CCGG	1 cut(s)	1015
MspR9I	CCNGG	1 cut(s)	31
MunI	CAATTG	2 cut(s)	539, 861
MvaI	CCWGG	1 cut(s)	31
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	2 cut(s)	98, 993
NdeII	GATC	3 cut(s)	298, 555, 681
NheI	GCTAGC	1 cut(s)	868
NlaIII	CATG	6 cut(s)	60, 181, 380, 407, 642, 896
NlaIV	GGNNCC	2 cut(s)	683, 954
NmuCI	GTSAC	1 cut(s)	116
NruI	TCGCGA	1 cut(s)	326
NsiI	ATGCAT	1 cut(s)	103
NspI	RCATGY	4 cut(s)	60, 181, 642, 896
PciI	ACATGT	1 cut(s)	892
PfeI	GAWTC	2 cut(s)	877, 1042
PkrI	GCNGC	3 cut(s)	84, 342, 835
PleI	GAGTC	3 cut(s)	298, 905, 1097
PpsI	GAGTC	3 cut(s)	298, 905, 1097
Ppu21I	YACGTR	2 cut(s)	434, 650
PscI	ACATGT	1 cut(s)	892
PshBI	ATTAAT	3 cut(s)	149, 546, 711
Psp124BI	GAGCTC	1 cut(s)	658
Psp6I	CCWGG	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	2 cut(s)	683, 954
PsrI	GAACNNNNNNTAC	2 cut(s)	562, 594
PsuI	RGATCY	2 cut(s)	555, 681
PvuII	CAGCTG	1 cut(s)	836
RruI	TCGCGA	1 cut(s)	326
RsaI	GTAC	3 cut(s)	5, 586, 784
RsaNI	GTAC	3 cut(s)	4, 585, 783
RseI	CAYNNNNRTG	2 cut(s)	262, 285
SacI	GAGCTC	1 cut(s)	658
SaqAI	TTAA	8 cut(s)	149, 203, 546, 594, 675, 711, 855, 936
SatI	GCNGC	3 cut(s)	83, 341, 834
Sau3AI	GATC	3 cut(s)	298, 555, 681
SchI	GAGTC	3 cut(s)	299, 905, 1097
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	2 cut(s)	658, 1022
SfaNI	GCATC	6 cut(s)	88, 266, 409, 458, 1005, 1045
SfcI	CTRYAG	1 cut(s)	129
SmiMI	CAYNNNNRTG	2 cut(s)	262, 285
SsiI	CCGC	4 cut(s)	175, 340, 848, 994
SspMI	CTAG	2 cut(s)	869, 920
SstI	GAGCTC	1 cut(s)	658
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	2 cut(s)	528, 956
TaaI	ACNGT	2 cut(s)	133, 287
TaiI	ACGT	4 cut(s)	214, 244, 436, 652
TaqI	TCGA	3 cut(s)	519, 880, 967
TauI	GCSGC	1 cut(s)	343
TfiI	GAWTC	2 cut(s)	877, 1042
Tru1I	TTAA	8 cut(s)	149, 203, 546, 594, 675, 711, 855, 936
Tru9I	TTAA	8 cut(s)	149, 203, 546, 594, 675, 711, 855, 936
TscAI	CASTG	1 cut(s)	834
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	2 cut(s)	82, 833
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	365, 917
TspRI	CASTG	1 cut(s)	834
VspI	ATTAAT	3 cut(s)	149, 546, 711
XapI	RAATTY	3 cut(s)	122, 161, 963
XceI	RCATGY	4 cut(s)	60, 181, 642, 896
XspI	CTAG	2 cut(s)	869, 920
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.