Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012666.1

Orthogroup ID

OG0008335

Physical Location & Seq

Genomic Coordinates Reverse (-)

7595 .. 8866

Gene Structure 1272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012666.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

atgacgaacctttcttcaatctctcggttcctctcttcctcaattcgcctcaaaaatcacaagctctcaatttctcacttctctactgtctcgtcggcagagacggtctacaatcacctccagagaaatggtggcaacattgagaaaaccctagcctcaatgaggctcaatttggactccaaatgtgtaagtcaggttttacatagatgctatcccacccaatcccaaatgggtcttagatttttcatatgggctggggttcactccagttataggcatagctattttatgttcagcaaagcttgcgaattgtataggattaggcaaaacccaagtgtgatttttgatgttttggaggcttatagtgctgaaggttgctctgttaatatgaaaatgtttaaagttgttttcaatatgtgtaaagaagctaagcttgctgatgaggctttgtgggttctgaggaaaatgccagagttcgggttgcgaggggataatgtagtgtataatgttgttataaggttgttttgtgataagggtgatttggatatggcggagagtttggtgaaggagatgagcatggtggagctttatccggatttgatcacatacatggtgatgattaaagggttgtgtaatgtgggtcggttggatgatgcgtgtgggttgtttaagtttatgaaggaaaatggttgtttgcctaatgttgtggtgtactcggcccttctcgatggattctgtaggtttggggatatggagagagccttgaagttgttagaggagatggagaaggaaggtggggattgtagtcctaatgtagtaacatatacgtctgtgattcaatatctttgtgacaagggtcggtcagtggaggcattgcttgttttggaccgaatggaagctcgtggttgtttaccaactcgcgtcacggttagttctttgatcacaggttttgttaaggaggatcaagttgagcaggcttataagttggttgatagagttgttgaaagtggaagtgttacaaaaactgattgctatagttctcttgttgtgtctttggaaagagtcagaaaacccaaggaggcagagaaagtctttaggacgatgcttgatagtggggtcaaaccaaacagtttggtgtctaccattatgttaaaaaaacgttgtttggagggacgtatggtggatgcatattgcttgtttgatgaacttgagaagatggaatgcttatcttctattggttcattatttgctttcagtttttgtgtcatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

423

Amino Acids

47.88

Weight (kDa)

8.02

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47360
fragaria_vesca	FvH4_5g19630 FvH4_5g19630
malus_domestica	MD04G1061400.v1.1 MD06G1055200.v1.1
prunus_persica	Prupe.4G276000_v2.0.a1 Prupe.4G276000_v2.0.a1
pyrus_communis	pycom04g05510 pycom06g04620
rosa_chinensis	RchiOBHm_Chr7g0204361
rosa_laevigata	RLG00000003470
rosa_multiflora	Rmu_sc0012268.1_g000001 Rmu_sc0012666.1_g000002
rosa_roxburghii	Rroxscaffold_3G00253200
rosa_rugosa	Rorug07G0082000 Rorug07G0082100 Rorug07G0082200 Rorug07G0082300 Rorug07G0082400 Rorug07G0082500
rosa_samantha	Rh7AG212700 Rh7DG220100
rosa_wichuraiana	Rw7G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	515, 981
AccI	GTMKAC	2 cut(s)	108, 1139
AccII	CGCG	1 cut(s)	921
AccIII	TCCGGA	1 cut(s)	592
AciI	CCGC	1 cut(s)	551
AclI	AACGTT	1 cut(s)	1159
AclWI	GGATC	1 cut(s)	969
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	1 cut(s)	713
AfiI	CCNNNNNNNGG	3 cut(s)	162, 273, 476
AgsI	TTSAA	5 cut(s)	18, 412, 766, 839, 1004
AluBI	AGCT	7 cut(s)	64, 282, 302, 428, 433, 586, 899
AluI	AGCT	7 cut(s)	64, 282, 302, 428, 433, 586, 899
Alw26I	GTCTC	2 cut(s)	94, 95
AlwI	GGATC	1 cut(s)	969
Aor13HI	TCCGGA	1 cut(s)	592
AoxI	GGCC	1 cut(s)	717
AspS9I	GGNCC	2 cut(s)	718, 886
AsuHPI	GGTGA	4 cut(s)	107, 548, 574, 625
AvaII	GGWCC	1 cut(s)	886
BauI	CACGAG	1 cut(s)	900
BccI	CCATC	3 cut(s)	722, 775, 1210
BclI	TGATCA	2 cut(s)	600, 939
BcoDI	GTCTC	2 cut(s)	94, 95
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	2 cut(s)	736, 1033
BlpI	GCTNAGC	1 cut(s)	429
Bme18I	GGWCC	1 cut(s)	886
BmgT120I	GGNCC	2 cut(s)	718, 886
BmiI	GGNNCC	1 cut(s)	29
BmsI	GCATC	4 cut(s)	197, 643, 1092, 1174
BoxI	GACNNNNGTC	1 cut(s)	855
BpmI	CTGGAG	2 cut(s)	104, 250
Bpu1102I	GCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	1229
BsaJI	CCNNGG	1 cut(s)	1074
BsaWI	WCCGGW	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 273, 476
Bse1I	ACTGG	1 cut(s)	267
Bse3DI	GCAATG	1 cut(s)	872
BseAI	TCCGGA	1 cut(s)	592
BseDI	CCNNGG	1 cut(s)	1074
BseGI	GGATG	2 cut(s)	655, 1189
BseLI	CCNNNNNNNGG	3 cut(s)	162, 273, 476
BseMI	GCAATG	1 cut(s)	872
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	1 cut(s)	267
BseRI	GAGGAG	1 cut(s)	791
BseYI	CCCAGC	1 cut(s)	254
Bsh1236I	CGCG	1 cut(s)	921
BshFI	GGCC	1 cut(s)	719
BsiSI	CCGG	1 cut(s)	593
BslFI	GGGAC	1 cut(s)	1185
BslI	CCNNNNNNNGG	3 cut(s)	162, 273, 476
BsmAI	GTCTC	2 cut(s)	94, 95
BsmBI	CGTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	1185
BsmI	GAATGC	1 cut(s)	1226
BsnI	GGCC	1 cut(s)	719
Bsp13I	TCCGGA	1 cut(s)	592
Bsp143I	GATC	3 cut(s)	600, 939, 961
Bsp1720I	GCTNAGC	1 cut(s)	429
BspACI	CCGC	1 cut(s)	551
BspANI	GGCC	1 cut(s)	719
BspCNI	CTCAG	1 cut(s)	450
BspEI	TCCGGA	1 cut(s)	592
BspFNI	CGCG	1 cut(s)	921
BspLI	GGNNCC	1 cut(s)	29
BspPI	GGATC	1 cut(s)	969
BsrDI	GCAATG	1 cut(s)	872
BsrI	ACTGG	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	1074
BssMI	GATC	3 cut(s)	600, 939, 961
BssSI	CACGAG	1 cut(s)	900
BssT1I	CCWWGG	1 cut(s)	1074
Bst2BI	CACGAG	1 cut(s)	900
Bst4CI	ACNGT	4 cut(s)	88, 106, 928, 1130
Bst6I	CTCTTC	1 cut(s)	40
BstAPI	GCANNNNNTGC	1 cut(s)	303
BstC8I	GCNNGC	3 cut(s)	304, 435, 975
BstDEI	CTNAG	3 cut(s)	236, 429, 458
BstENI	CCTNNNNNAGG	1 cut(s)	160
BstF5I	GGATG	2 cut(s)	655, 1189
BstFNI	CGCG	1 cut(s)	921
BstKTI	GATC	3 cut(s)	603, 942, 964
BstMAI	GTCTC	2 cut(s)	94, 95
BstMBI	GATC	3 cut(s)	600, 939, 961
BstMWI	GCNNNNNNNGC	4 cut(s)	303, 365, 434, 443
BstPAI	GACNNNNGTC	1 cut(s)	855
BstSFI	CTRYAG	2 cut(s)	736, 1033
BstUI	CGCG	1 cut(s)	921
BstXI	CCANNNNNNTGG	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	719
BtsCI	GGATG	2 cut(s)	655, 1189
BtsIMutI	CAGTG	1 cut(s)	870
Cac8I	GCNNGC	3 cut(s)	304, 435, 975
Cfr13I	GGNCC	2 cut(s)	718, 886
CseI	GACGC	1 cut(s)	910
Csp6I	GTAC	1 cut(s)	712
CviAII	CATG	3 cut(s)	577, 610, 1267
CviQI	GTAC	1 cut(s)	712
DdeI	CTNAG	3 cut(s)	236, 429, 458
DpnI	GATC	3 cut(s)	602, 941, 963
DpnII	GATC	3 cut(s)	600, 939, 961
DraI	TTTAAA	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	566
Eco130I	CCWWGG	1 cut(s)	1074
Eco47I	GGWCC	1 cut(s)	886
Eco57I	CTGAAG	1 cut(s)	390
EcoNI	CCTNNNNNAGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	1074
EcoT22I	ATGCAT	1 cut(s)	1189
ErhI	CCWWGG	1 cut(s)	1074
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	3 cut(s)	580, 613, 1270
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FaqI	GGGAC	1 cut(s)	1185
FatI	CATG	3 cut(s)	576, 609, 1266
FauNDI	CATATG	1 cut(s)	248
FbaI	TGATCA	2 cut(s)	600, 939
FblI	GTMKAC	2 cut(s)	108, 1139
FokI	GGATG	2 cut(s)	662, 1196
FspBI	CTAG	1 cut(s)	152
GsaI	CCCAGC	1 cut(s)	258
GsuI	CTGGAG	2 cut(s)	104, 250
HaeIII	GGCC	1 cut(s)	719
HapII	CCGG	1 cut(s)	593
HgaI	GACGC	1 cut(s)	910
Hin1II	CATG	3 cut(s)	580, 613, 1270
HindIII	AAGCTT	2 cut(s)	300, 431
HinfI	GANTC	4 cut(s)	176, 732, 835, 1062
HpaII	CCGG	1 cut(s)	593
HphI	GGTGA	4 cut(s)	107, 548, 574, 625
Hpy166II	GTNNAC	5 cut(s)	109, 262, 712, 911, 1140
Hpy188I	TCNGA	2 cut(s)	459, 1067
Hpy188III	TCNNGA	3 cut(s)	121, 593, 725
Hpy8I	GTNNAC	5 cut(s)	109, 262, 712, 911, 1140
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	6 cut(s)	365, 559, 673, 731, 781, 785
HpyCH4III	ACNGT	4 cut(s)	88, 106, 928, 1130
HpyCH4IV	ACGT	3 cut(s)	827, 1159, 1174
HpyCH4V	TGCA	1 cut(s)	1187
HpyF10VI	GCNNNNNNNGC	4 cut(s)	303, 365, 434, 443
HpyF3I	CTNAG	3 cut(s)	236, 429, 458
HpySE526I	ACGT	3 cut(s)	827, 1159, 1174
Hsp92II	CATG	3 cut(s)	580, 613, 1270
Kpn2I	TCCGGA	1 cut(s)	592
Ksp22I	TGATCA	2 cut(s)	600, 939
Kzo9I	GATC	3 cut(s)	600, 939, 961
LmnI	GCTCC	1 cut(s)	583
LpnPI	CCDG	8 cut(s)	134, 179, 240, 280, 483, 606, 930, 959
LweI	GCATC	4 cut(s)	197, 643, 1092, 1174
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	3 cut(s)	827, 1159, 1174
MaeIII	GTNAC	4 cut(s)	817, 848, 922, 1015
MalI	GATC	3 cut(s)	602, 941, 963
MboI	GATC	3 cut(s)	600, 939, 961
MboII	GAAGA	4 cut(s)	6, 27, 1221, 1225
MluCI	AATT	4 cut(s)	42, 69, 169, 308
MlyI	GAGTC	2 cut(s)	170, 1071
MmeI	TCCRAC	1 cut(s)	627
Mph1103I	ATGCAT	1 cut(s)	1189
MroI	TCCGGA	1 cut(s)	592
MseI	TTAA	6 cut(s)	384, 399, 621, 669, 954, 1151
MslI	CAYNNNNRTG	2 cut(s)	608, 614
MspI	CCGG	1 cut(s)	593
Mva1269I	GAATGC	1 cut(s)	1226
MvnI	CGCG	1 cut(s)	921
MwoI	GCNNNNNNNGC	4 cut(s)	303, 365, 434, 443
NdeI	CATATG	1 cut(s)	248
NdeII	GATC	3 cut(s)	600, 939, 961
NlaIII	CATG	3 cut(s)	580, 613, 1270
NlaIV	GGNNCC	1 cut(s)	29
NmeAIII	GCCGAG	1 cut(s)	695
NmuCI	GTSAC	2 cut(s)	848, 922
NsiI	ATGCAT	1 cut(s)	1189
PctI	GAATGC	1 cut(s)	1226
PfeI	GAWTC	2 cut(s)	732, 835
PleI	GAGTC	2 cut(s)	170, 1070
PpsI	GAGTC	2 cut(s)	170, 1070
PshAI	GACNNNNGTC	1 cut(s)	855
PsiI	TTATAA	2 cut(s)	515, 981
Psp1406I	AACGTT	1 cut(s)	1159
PspFI	CCCAGC	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	29
PspPI	GGNCC	2 cut(s)	718, 886
RsaI	GTAC	1 cut(s)	713
RsaNI	GTAC	1 cut(s)	712
RseI	CAYNNNNRTG	2 cut(s)	608, 614
SaqAI	TTAA	6 cut(s)	384, 399, 621, 669, 954, 1151
Sau3AI	GATC	3 cut(s)	600, 939, 961
Sau96I	GGNCC	2 cut(s)	718, 886
SchI	GAGTC	2 cut(s)	170, 1071
SfaNI	GCATC	4 cut(s)	197, 643, 1092, 1174
SfcI	CTRYAG	2 cut(s)	736, 1033
SinI	GGWCC	1 cut(s)	886
SmiMI	CAYNNNNRTG	2 cut(s)	608, 614
SmlI	CTYRAG	1 cut(s)	1208
SmoI	CTYRAG	1 cut(s)	1208
Sse9I	AATT	4 cut(s)	42, 69, 169, 308
SsiI	CCGC	1 cut(s)	551
SspMI	CTAG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	1074
TaaI	ACNGT	4 cut(s)	88, 106, 928, 1130
TaiI	ACGT	3 cut(s)	830, 1162, 1177
TaqI	TCGA	1 cut(s)	726
TaqII	GACCGA	2 cut(s)	849, 903
TasI	AATT	4 cut(s)	42, 69, 169, 308
TatI	WGTACW	1 cut(s)	711
TfiI	GAWTC	2 cut(s)	732, 835
Tru1I	TTAA	6 cut(s)	384, 399, 621, 669, 954, 1151
Tru9I	TTAA	6 cut(s)	384, 399, 621, 669, 954, 1151
TscAI	CASTG	1 cut(s)	870
TseFI	GTSAC	2 cut(s)	848, 922
Tsp45I	GTSAC	2 cut(s)	848, 922
TspDTI	ATGAA	5 cut(s)	235, 404, 692, 1218, 1230
TspRI	CASTG	1 cut(s)	870
VpaK11BI	GGWCC	1 cut(s)	886
XagI	CCTNNNNNAGG	1 cut(s)	160
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128
XmiI	GTMKAC	2 cut(s)	108, 1139
XspI	CTAG	1 cut(s)	152
Zsp2I	ATGCAT	1 cut(s)	1189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.