Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008335

Physical Location & Seq

Genomic Coordinates Reverse (-)

6438129 .. 6438477

Gene Structure 349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0082000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGAAGGCTTCCGGTACTCTCGTCGCCTCCATGGTCGCCGCCTCCACCATGGCTCTGACCTCCTCCTCCTCCTCTCCCTCCGCCGCGCCGGGACTTGCCTCTGCGAAGGGCGGGCGCAATTCGCATACGGCGTCGGCGTCGTCGGATAAGGAGAAGTTCGAGCCCAGATTCGACGGGTTGAGGTTCATTGAGACGTTGGTCACAGCGCACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

71

Amino Acids

7.23

Weight (kDa)

9.98

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47360
fragaria_vesca	FvH4_5g19630 FvH4_5g19630
malus_domestica	MD04G1061400.v1.1 MD06G1055200.v1.1
prunus_persica	Prupe.4G276000_v2.0.a1 Prupe.4G276000_v2.0.a1
pyrus_communis	pycom04g05510 pycom06g04620
rosa_chinensis	RchiOBHm_Chr7g0204361
rosa_laevigata	RLG00000003470
rosa_multiflora	Rmu_sc0012268.1_g000001 Rmu_sc0012666.1_g000002
rosa_roxburghii	Rroxscaffold_3G00253200
rosa_rugosa	Rorug07G0082000 Rorug07G0082100 Rorug07G0082200 Rorug07G0082300 Rorug07G0082400 Rorug07G0082500
rosa_samantha	Rh7AG212700 Rh7DG220100
rosa_wichuraiana	Rw7G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	86
AciI	CCGC	4 cut(s)	39, 81, 84, 111
AcyI	GRCGYC	2 cut(s)	131, 137
AfaI	GTAC	1 cut(s)	16
Alw26I	GTCTC	1 cut(s)	185
AspLEI	GCGC	3 cut(s)	88, 117, 208
AsuC2I	CCSGG	1 cut(s)	90
BaeI	ACNNNNGTAYC	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	165
BceAI	ACGGC	1 cut(s)	144
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	185
BisI	GCNGC	2 cut(s)	39, 84
BlsI	GCNGC	2 cut(s)	40, 85
Bme1390I	CCNGG	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	90
BoxI	GACNNNNGTC	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	90
BsaHI	GRCGYC	2 cut(s)	131, 137
BsaJI	CCNNGG	2 cut(s)	30, 48
BsaWI	WCCGGW	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	30, 48
BseRI	GAGGAG	4 cut(s)	52, 55, 58, 61
Bsh1236I	CGCG	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	12, 89
BslFI	GGGAC	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	185
BsmBI	CGTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp19I	CCATGG	2 cut(s)	30, 48
BspACI	CCGC	4 cut(s)	39, 81, 84, 111
BspFNI	CGCG	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	30, 48
BssNI	GRCGYC	2 cut(s)	131, 137
BssT1I	CCWWGG	2 cut(s)	30, 48
BstACI	GRCGYC	2 cut(s)	131, 137
BstC8I	GCNNGC	1 cut(s)	113
BstDSI	CCRYGG	2 cut(s)	30, 48
BstFNI	CGCG	1 cut(s)	86
BstHHI	GCGC	3 cut(s)	88, 117, 208
BstMAI	GTCTC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstPAI	GACNNNNGTC	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	88
BstUI	CGCG	1 cut(s)	86
BtgI	CCRYGG	2 cut(s)	30, 48
Cac8I	GCNNGC	1 cut(s)	113
CfoI	GCGC	3 cut(s)	88, 117, 208
CseI	GACGC	2 cut(s)	120, 126
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	2 cut(s)	31, 49
CviJI	RGCY	3 cut(s)	8, 53, 163
CviKI_1	RGCY	3 cut(s)	8, 53, 163
CviQI	GTAC	1 cut(s)	15
EciI	GGCGGA	1 cut(s)	70
Eco130I	CCWWGG	2 cut(s)	30, 48
Eco24I	GRGCYC	1 cut(s)	165
EcoT14I	CCWWGG	2 cut(s)	30, 48
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	2 cut(s)	30, 48
Esp3I	CGTCTC	1 cut(s)	185
FaeI	CATG	2 cut(s)	34, 52
FaiI	YATR	3 cut(s)	32, 50, 126
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	2 cut(s)	30, 48
FauI	CCCGC	1 cut(s)	104
Fnu4HI	GCNGC	2 cut(s)	39, 84
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	2 cut(s)	39, 84
GlaI	GCGC	3 cut(s)	87, 116, 207
GluI	GCNGC	2 cut(s)	39, 84
HapII	CCGG	2 cut(s)	12, 89
HgaI	GACGC	2 cut(s)	120, 126
HhaI	GCGC	3 cut(s)	88, 117, 208
Hin1I	GRCGYC	2 cut(s)	131, 137
Hin1II	CATG	2 cut(s)	34, 52
Hin6I	GCGC	3 cut(s)	86, 115, 206
HinP1I	GCGC	3 cut(s)	86, 115, 206
HinfI	GANTC	1 cut(s)	168
HpaII	CCGG	2 cut(s)	12, 89
Hpy188I	TCNGA	2 cut(s)	57, 145
Hpy99I	CGWCG	5 cut(s)	26, 136, 142, 145, 176
HpyAV	CCTTC	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpySE526I	ACGT	1 cut(s)	194
Hsp92I	GRCGYC	2 cut(s)	131, 137
Hsp92II	CATG	2 cut(s)	34, 52
HspAI	GCGC	3 cut(s)	86, 115, 206
LpnPI	CCDG	3 cut(s)	25, 102, 178
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	123
MspI	CCGG	2 cut(s)	12, 89
MspR9I	CCNGG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	121
NciI	CCSGG	1 cut(s)	90
NcoI	CCATGG	2 cut(s)	30, 48
NlaIII	CATG	2 cut(s)	34, 52
NmuCI	GTSAC	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	2 cut(s)	128, 134
PfeI	GAWTC	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	40, 85
PshAI	GACNNNNGTC	1 cut(s)	197
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
SatI	GCNGC	2 cut(s)	39, 84
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	3 cut(s)	62, 185, 197
Sse9I	AATT	1 cut(s)	118
SsiI	CCGC	4 cut(s)	39, 81, 84, 111
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	2 cut(s)	30, 48
TaiI	ACGT	1 cut(s)	197
TaqI	TCGA	2 cut(s)	159, 171
TasI	AATT	1 cut(s)	118
TauI	GCSGC	2 cut(s)	41, 86
TfiI	GAWTC	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	17, 175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.