Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012268.1

Orthogroup ID

OG0008335

Physical Location & Seq

Genomic Coordinates Forward (+)

13 .. 873

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012268.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atgagcatggtggagctttatccggatttgatcacatacatggtgatgattaaagggttgtgtaatgtgggtcggttggatgatgcgtgtgggttgtttaagtttatgaaggaaaatggttgtttgcctaatgttgtggtgtactcggcccttctcgatggattctgtaggtttggggatatggagagagccttgaagttgttagaggagatggagaaggaaggtggggattgtagtcctaatgtagtaacatatacgtctgtgattcaatatctttgtgacaagggtcggtcagtggaggcattgcttgttttggaccgaatggaagctcgtggttgtttaccaactcgcgtcacggttagttctttgatcacaggttttgttaaggaggatcaagttgagcaggcttataagttggttgatagagttgttgaaagtggaagtgttacaaaaactgattgctatagttctcttgttgtgtctttggaaagagtcagaaaacccgaggaggcagagaaagtctttaggacgatgcttgatagtggggtcaaaccaaacagtttggtgtctaccattatgttaaaaaaacgttgtttggagggacgtatggtggatgcatattgcttgtttgatgaacttgagaagatggaatgcttatcttctattgattctgatacttattctattcttttagtggggctttgtcagcaaagacacttagtgcaggctgcaaagcttgcaagggtaatgctgagtaaaggaattaaactaaaagctccatatgttgatattatagctgaggtcctgatgaaatctggagatgacgagttacttgaacaattgacaagaaatggaaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

286

Amino Acids

32.03

Weight (kDa)

5.26

Isoelectric Point (pI)

27.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47360
fragaria_vesca	FvH4_5g19630 FvH4_5g19630
malus_domestica	MD04G1061400.v1.1 MD06G1055200.v1.1
prunus_persica	Prupe.4G276000_v2.0.a1 Prupe.4G276000_v2.0.a1
pyrus_communis	pycom04g05510 pycom06g04620
rosa_chinensis	RchiOBHm_Chr7g0204361
rosa_laevigata	RLG00000003470
rosa_multiflora	Rmu_sc0012268.1_g000001 Rmu_sc0012666.1_g000002
rosa_roxburghii	Rroxscaffold_3G00253200
rosa_rugosa	Rorug07G0082000 Rorug07G0082100 Rorug07G0082200 Rorug07G0082300 Rorug07G0082400 Rorug07G0082500
rosa_samantha	Rh7AG212700 Rh7DG220100
rosa_wichuraiana	Rw7G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AccI	GTMKAC	1 cut(s)	569
AccII	CGCG	1 cut(s)	351
AccIII	TCCGGA	1 cut(s)	22
AclI	AACGTT	1 cut(s)	589
AclWI	GGATC	1 cut(s)	399
AdeI	CACNNNGTG	1 cut(s)	721
AfaI	GTAC	1 cut(s)	143
AgsI	TTSAA	4 cut(s)	196, 269, 434, 836
AluBI	AGCT	5 cut(s)	16, 329, 736, 776, 797
AluI	AGCT	5 cut(s)	16, 329, 736, 776, 797
AlwI	GGATC	1 cut(s)	399
Ama87I	CYCGRG	1 cut(s)	503
Aor13HI	TCCGGA	1 cut(s)	22
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	728
AspS9I	GGNCC	3 cut(s)	148, 316, 802
AsuHPI	GGTGA	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	503
AvaII	GGWCC	2 cut(s)	316, 802
BauI	CACGAG	1 cut(s)	330
BbvCI	CCTCAGC	1 cut(s)	798
BbvI	GCAGC	1 cut(s)	715
BccI	CCATC	3 cut(s)	152, 205, 640
BclI	TGATCA	2 cut(s)	30, 369
BfmI	CTRYAG	2 cut(s)	166, 463
BisI	GCNGC	1 cut(s)	729
BlsI	GCNGC	1 cut(s)	730
Bme18I	GGWCC	2 cut(s)	316, 802
BmeT110I	CYCGRG	1 cut(s)	503
BmgT120I	GGNCC	3 cut(s)	148, 316, 802
BmsI	GCATC	3 cut(s)	73, 522, 604
BoxI	GACNNNNGTC	1 cut(s)	285
BpmI	CTGGAG	1 cut(s)	837
Bpu10I	CCTNAGC	1 cut(s)	798
BpuEI	CTTGAG	1 cut(s)	659
BsaJI	CCNNGG	1 cut(s)	504
BsaWI	WCCGGW	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	302
BseAI	TCCGGA	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	2 cut(s)	85, 619
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	743, 789
BseRI	GAGGAG	2 cut(s)	221, 521
BseXI	GCAGC	1 cut(s)	715
BsgI	GTGCAG	1 cut(s)	743
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	149
BsiHKCI	CYCGRG	1 cut(s)	503
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	615
BsmFI	GGGAC	1 cut(s)	615
BsmI	GAATGC	1 cut(s)	656
BsnI	GGCC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	503
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	30, 369, 391
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	2 cut(s)	744, 790
BspEI	TCCGGA	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	351
BspPI	GGATC	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	3 cut(s)	30, 369, 391
BssSI	CACGAG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	330
Bst4CI	ACNGT	2 cut(s)	358, 560
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstC8I	GCNNGC	3 cut(s)	405, 726, 738
BstDEI	CTNAG	3 cut(s)	718, 752, 798
BstF5I	GGATG	2 cut(s)	85, 619
BstFNI	CGCG	1 cut(s)	351
BstKTI	GATC	3 cut(s)	33, 372, 394
BstMBI	GATC	3 cut(s)	30, 369, 391
BstMWI	GCNNNNNNNGC	2 cut(s)	706, 737
BstPAI	GACNNNNGTC	1 cut(s)	285
BstSFI	CTRYAG	2 cut(s)	166, 463
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	715
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	85, 619
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	3 cut(s)	405, 726, 738
Cfr13I	GGNCC	3 cut(s)	148, 316, 802
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	2 cut(s)	7, 40
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	3 cut(s)	718, 752, 798
DpnI	GATC	3 cut(s)	32, 371, 393
DpnII	GATC	3 cut(s)	30, 369, 391
DraIII	CACNNNGTG	1 cut(s)	721
Eco47I	GGWCC	2 cut(s)	316, 802
Eco88I	CYCGRG	1 cut(s)	503
EcoO109I	RGGNCCY	1 cut(s)	802
EcoT22I	ATGCAT	1 cut(s)	619
FaeI	CATG	2 cut(s)	10, 43
FaqI	GGGAC	1 cut(s)	615
FatI	CATG	2 cut(s)	6, 39
FauNDI	CATATG	1 cut(s)	781
FbaI	TGATCA	2 cut(s)	30, 369
FblI	GTMKAC	1 cut(s)	569
Fnu4HI	GCNGC	1 cut(s)	729
FokI	GGATG	2 cut(s)	92, 626
Fsp4HI	GCNGC	1 cut(s)	729
GluI	GCNGC	1 cut(s)	729
GsuI	CTGGAG	1 cut(s)	837
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	1 cut(s)	23
HgaI	GACGC	1 cut(s)	340
Hin1II	CATG	2 cut(s)	10, 43
HindIII	AAGCTT	1 cut(s)	734
HinfI	GANTC	4 cut(s)	162, 265, 492, 668
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	3 cut(s)	142, 341, 570
Hpy188I	TCNGA	2 cut(s)	497, 673
Hpy188III	TCNNGA	4 cut(s)	23, 155, 805, 816
Hpy8I	GTNNAC	3 cut(s)	142, 341, 570
HpyAV	CCTTC	5 cut(s)	103, 161, 211, 215, 849
HpyCH4III	ACNGT	2 cut(s)	358, 560
HpyCH4IV	ACGT	3 cut(s)	257, 589, 604
HpyCH4V	TGCA	4 cut(s)	617, 724, 731, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	706, 737
HpyF3I	CTNAG	3 cut(s)	718, 752, 798
HpySE526I	ACGT	3 cut(s)	257, 589, 604
Hsp92II	CATG	2 cut(s)	10, 43
Kpn2I	TCCGGA	1 cut(s)	22
Ksp22I	TGATCA	2 cut(s)	30, 369
Kzo9I	GATC	3 cut(s)	30, 369, 391
LmnI	GCTCC	2 cut(s)	13, 781
LpnPI	CCDG	6 cut(s)	36, 360, 389, 710, 801, 818
Lsp1109I	GCAGC	1 cut(s)	715
LweI	GCATC	3 cut(s)	73, 522, 604
MaeII	ACGT	3 cut(s)	257, 589, 604
MaeIII	GTNAC	5 cut(s)	247, 278, 352, 445, 828
MalI	GATC	3 cut(s)	32, 371, 393
MboI	GATC	3 cut(s)	30, 369, 391
MboII	GAAGA	2 cut(s)	651, 655
MfeI	CAATTG	1 cut(s)	839
MluCI	AATT	2 cut(s)	762, 839
MlyI	GAGTC	1 cut(s)	501
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	7 cut(s)	199, 292, 382, 499, 502, 592, 793
Mph1103I	ATGCAT	1 cut(s)	619
MroI	TCCGGA	1 cut(s)	22
MseI	TTAA	5 cut(s)	51, 99, 384, 581, 765
MslI	CAYNNNNRTG	2 cut(s)	38, 44
MspI	CCGG	1 cut(s)	23
MunI	CAATTG	1 cut(s)	839
Mva1269I	GAATGC	1 cut(s)	656
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	2 cut(s)	706, 737
NdeI	CATATG	1 cut(s)	781
NdeII	GATC	3 cut(s)	30, 369, 391
NlaIII	CATG	2 cut(s)	10, 43
NmeAIII	GCCGAG	1 cut(s)	125
NmuCI	GTSAC	2 cut(s)	278, 352
NsiI	ATGCAT	1 cut(s)	619
PctI	GAATGC	1 cut(s)	656
PfeI	GAWTC	3 cut(s)	162, 265, 668
PkrI	GCNGC	1 cut(s)	730
PleI	GAGTC	1 cut(s)	500
PpsI	GAGTC	1 cut(s)	500
PpuMI	RGGWCCY	1 cut(s)	802
PshAI	GACNNNNGTC	1 cut(s)	285
PsiI	TTATAA	1 cut(s)	411
Psp1406I	AACGTT	1 cut(s)	589
Psp5II	RGGWCCY	1 cut(s)	802
PspPI	GGNCC	3 cut(s)	148, 316, 802
PspPPI	RGGWCCY	1 cut(s)	802
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	2 cut(s)	38, 44
SaqAI	TTAA	5 cut(s)	51, 99, 384, 581, 765
SatI	GCNGC	1 cut(s)	729
Sau3AI	GATC	3 cut(s)	30, 369, 391
Sau96I	GGNCC	3 cut(s)	148, 316, 802
SchI	GAGTC	1 cut(s)	501
SfaNI	GCATC	3 cut(s)	73, 522, 604
SfcI	CTRYAG	2 cut(s)	166, 463
SinI	GGWCC	2 cut(s)	316, 802
SmiMI	CAYNNNNRTG	2 cut(s)	38, 44
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
Sse9I	AATT	2 cut(s)	762, 839
TaaI	ACNGT	2 cut(s)	358, 560
TaiI	ACGT	3 cut(s)	260, 592, 607
TaqI	TCGA	1 cut(s)	156
TaqII	GACCGA	2 cut(s)	279, 333
TasI	AATT	2 cut(s)	762, 839
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	3 cut(s)	162, 265, 668
Tru1I	TTAA	5 cut(s)	51, 99, 384, 581, 765
Tru9I	TTAA	5 cut(s)	51, 99, 384, 581, 765
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	2 cut(s)	278, 352
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	2 cut(s)	278, 352
TspDTI	ATGAA	3 cut(s)	122, 648, 824
TspRI	CASTG	1 cut(s)	300
VpaK11BI	GGWCC	2 cut(s)	316, 802
XmiI	GTMKAC	1 cut(s)	569
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.