Prupe.5G106800_v2.0.a1

cellulase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0010905
Physical Location & Seq
Reverse (-)
11275783 .. 11279310
3528 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G106800.2

Sequence Viewer

Length: 1407 bp
ATGAAGCACGGTCTAGTATTTGTGTGGGTTTTGGTCTTGTGGTGTGTGTTGGTTAACATGGATGGGCTAGCCCTAGCAATGGAGGATGAGACTGAAGGGTTGTCCTCCTCCCTAGCTGCTAATTGTAACTACGGAGATGCCCTTGGCAAAGCATTATTATTCTTTGAAGGCCAACGTTCGGGGAAGTTGCCCACAGGCCAGCGAGTGACCTGGAGAGGAGACTCTGCATGCACCGATGGCACTCCTGAGAACGTGAACTTGGTGGGAGGATACTATGACGCAGGTGACAACGTCAAATTTGGGTGGCCAATGGCCTTTAGTGTCAGCTTGTTGAGTTGGGCTGCTGTGGAGTACCGGCAGCAGATATCTTCGACAAACCAGCTACCCTATCTGCGAAAAGCAATCCGCTGGGGCACAAACTTCATACTGAAAGCTCACACTTCACCCACCACATTCTATACCCAGGTAGGAGATGGAAATGCGGATCACCAGTGCTGGGAGCGCCCTGAAGACATGGATACACCACGAACGCTTTACAAGATCACTTCTTCTTCTCCAGGCTCTGAGCCAGCAGCTGAGGCTGCTGCTGCCCTTGCTTCTGCTTCCATTGTCTTCAAAGTGGCAAATTCCAAATATTCTGCTACCCTCTTGAGCCATTCCAAATCACTGTTTGACTTGGCAGACCAACACAGAGCTTCTTACCAAGGCTATTGCCCCTTTTACTGCTCTTACTCCGGCTATCAGGATGAGTTGTTATGGGCGGCGGCTTGGCTATACAAGGCAAGTGGAGACATCAAGTACTTGAATTATGTGTTGACAAACCAAGGGTGGAGCCAAGCAGTGAATGAGTTCAGTTGGGACAACAAATTTGCTGGAGCTCAGACATTACTGGCCAAGGAATTTCATCGTGGAAAGACGAATTTGGCTAAGTTCAAGACCGATGCCGAGTCATTTGTATGTGCACTGATGCCAGGGAGCAGCTCTGTACAGATTAGAACAACCCCAGTCCAATGTGGCTCTGCCTTTTTCTCTGCGTCCCAAATCAGAGCCTTTGCAAAAACTCAGGTGGACTACATTCTAGGAAAAAATCCCAAGAATATGTCATACATGGTGGGCTTTGGTGCCAAATACCCTACACACTTGCACCATAGAGGTTCATCCATCCCTTCAATGAAAGTCCACCCAACCAAGGTGGATTGCGATGGTGGCTACTCCAGCTATTACTCATCTCCCAATCCAAACCCTAACACTCATGTGGGTGCAGTTGTTGGGGGTCCAGATGTAAATGACCAGTTCGGGGATGCAAGATCAGACTATTCTCACTCTGAACCTACAACTTATATGAATGCTGCTTTTGTGGGTGCGGTGGCTGCTTTAGTTGGTCAAGGCAATGCAGTGTGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

469

Amino Acids

51.0

Weight (kDa)

6.63

Isoelectric Point (pI)

28.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010905)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09740 AT4G23560
fragaria_vesca FvH4_5g03220
malus_domestica MD06G1091600.v1.1
prunus_persica Prupe.5G106800_v2.0.a1 Prupe.5G106800_v2.0.a1
pyrus_communis pycom06g08750
rosa_chinensis RchiOBHm_Chr7g0196541
rosa_laevigata RLG00000004006
rosa_multiflora Rmu_sc0013350.1_g000007
rosa_roxburghii Rroxscaffold_3G00259210
rosa_rugosa Rorug07G0034400 Rorug07G0034500 Rorug07G0034600
rosa_samantha Rh1BG041400 Rh7AG158700 Rh7BG160700 Rh7CG167100 Rh7DG159900
rosa_wichuraiana Rw7G013870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 272
Acc36I ACCTGC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 1121
AciI CCGC 5 cut(s) 406, 482, 761, 764, 1364
AclI AACGTT 1 cut(s) 175
AclWI GGATC 1 cut(s) 492
AcoI YGGCCR 2 cut(s) 305, 891
AcsI RAATTY 5 cut(s) 296, 625, 866, 899, 919
AcuI CTGAAG 2 cut(s) 114, 528
AfaI GTAC 3 cut(s) 353, 800, 987
AfiI CCNNNNNNNGG 5 cut(s) 79, 178, 496, 1189, 1297
AgsI TTSAA 5 cut(s) 167, 616, 805, 934, 1170
AjnI CCWGG 4 cut(s) 209, 462, 556, 970
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AleI CACNNNNGTG 1 cut(s) 1253
AluBI AGCT 9 cut(s) 116, 327, 382, 434, 575, 695, 878, 981, 1218
AluI AGCT 9 cut(s) 116, 327, 382, 434, 575, 695, 878, 981, 1218
Alw21I GWGCWC 2 cut(s) 880, 964
Alw26I GTCTC 3 cut(s) 83, 213, 783
Alw44I GTGCAC 1 cut(s) 960
AlwI GGATC 1 cut(s) 492
AlwNI CAGNNNCTG 2 cut(s) 563, 575
AoxI GGCC 5 cut(s) 169, 196, 305, 312, 891
ApaLI GTGCAC 1 cut(s) 960
ApoI RAATTY 5 cut(s) 296, 625, 866, 899, 919
ArsI GACNNNNNNTTYG 2 cut(s) 851, 883
Asp700I GAANNNNTTC 1 cut(s) 848
AspLEI GCGC 1 cut(s) 504
AspS9I GGNCC 1 cut(s) 1274
AsuHPI GGTGA 3 cut(s) 296, 435, 479
AsuNHI GCTAGC 1 cut(s) 67
AvaII GGWCC 1 cut(s) 1274
BaeGI GKGCMC 2 cut(s) 416, 964
BalI TGGCCA 2 cut(s) 307, 893
BanI GGYRCC 1 cut(s) 1121
BanII GRGCYC 1 cut(s) 880
BbsI GAAGAC 2 cut(s) 516, 604
Bbv12I GWGCWC 2 cut(s) 880, 964
BbvCI CCTCAGC 1 cut(s) 576
BccI CCATC 5 cut(s) 56, 230, 467, 1169, 1196
BciT130I CCWGG 4 cut(s) 211, 464, 558, 972
BciVI GTATCC 2 cut(s) 263, 511
BcoDI GTCTC 3 cut(s) 83, 213, 783
BfaI CTAG 5 cut(s) 14, 68, 74, 113, 1079
BfoI RGCGCY 1 cut(s) 505
BfuAI ACCTGC 1 cut(s) 272
BfuI GTATCC 2 cut(s) 263, 511
BmcAI AGTACT 1 cut(s) 800
Bme1390I CCNGG 4 cut(s) 211, 464, 558, 972
Bme18I GGWCC 1 cut(s) 1274
BmgT120I GGNCC 1 cut(s) 1274
BmiI GGNNCC 3 cut(s) 833, 1123, 1275
BmrFI CCNGG 4 cut(s) 211, 464, 558, 972
BmrI ACTGGG 1 cut(s) 998
BmsI GCATC 4 cut(s) 127, 931, 957, 1291
BmtI GCTAGC 1 cut(s) 71
BmuI ACTGGG 1 cut(s) 998
BpiI GAAGAC 2 cut(s) 516, 604
BpmI CTGGAG 4 cut(s) 232, 540, 894, 1198
Bpu10I CCTNAGC 1 cut(s) 576
BpuEI CTTGAG 1 cut(s) 670
BsaJI CCNNGG 7 cut(s) 142, 462, 703, 823, 894, 971, 1188
Bsc4I CCNNNNNNNGG 5 cut(s) 79, 178, 496, 1189, 1297
Bse118I RCCGGY 1 cut(s) 354
Bse1I ACTGG 4 cut(s) 490, 894, 1004, 1291
Bse3DI GCAATG 2 cut(s) 84, 1396
BseBI CCWGG 4 cut(s) 211, 464, 558, 972
BseDI CCNNGG 7 cut(s) 142, 462, 703, 823, 894, 971, 1188
BseGI GGATG 6 cut(s) 67, 91, 751, 1157, 1161, 1306
BseLI CCNNNNNNNGG 5 cut(s) 79, 178, 496, 1189, 1297
BseMI GCAATG 2 cut(s) 84, 1396
BseMII CTCAG 5 cut(s) 237, 555, 567, 893, 1076
BseNI ACTGG 4 cut(s) 490, 894, 1004, 1291
BseRI GAGGAG 2 cut(s) 97, 231
BseSI GKGCMC 2 cut(s) 416, 964
BseYI CCCAGC 2 cut(s) 408, 495
BsgI GTGCAG 1 cut(s) 1281
BshFI GGCC 5 cut(s) 171, 198, 307, 314, 893
BshNI GGYRCC 1 cut(s) 1121
BsiHKAI GWGCWC 2 cut(s) 880, 964
BsiSI CCGG 2 cut(s) 355, 735
BslFI GGGAC 2 cut(s) 872, 1021
BslI CCNNNNNNNGG 5 cut(s) 79, 178, 496, 1189, 1297
BsmAI GTCTC 3 cut(s) 83, 213, 783
BsmFI GGGAC 2 cut(s) 872, 1021
BsmI GAATGC 1 cut(s) 1351
BsnI GGCC 5 cut(s) 171, 198, 307, 314, 893
Bsp1286I GDGCHC 3 cut(s) 416, 880, 964
Bsp1407I TGTACA 1 cut(s) 985
Bsp143I GATC 3 cut(s) 484, 540, 1307
BspACI CCGC 5 cut(s) 406, 482, 761, 764, 1364
BspANI GGCC 5 cut(s) 171, 198, 307, 314, 893
BspCNI CTCAG 5 cut(s) 238, 556, 568, 892, 1075
BspLI GGNNCC 3 cut(s) 833, 1123, 1275
BspMI ACCTGC 1 cut(s) 272
BspOI GCTAGC 1 cut(s) 71
BspPI GGATC 1 cut(s) 492
BspT107I GGYRCC 1 cut(s) 1121
BsrDI GCAATG 2 cut(s) 84, 1396
BsrFI RCCGGY 1 cut(s) 354
BsrGI TGTACA 1 cut(s) 985
BsrI ACTGG 4 cut(s) 490, 894, 1004, 1291
BssAI RCCGGY 1 cut(s) 354
BssECI CCNNGG 7 cut(s) 142, 462, 703, 823, 894, 971, 1188
BssMI GATC 3 cut(s) 484, 540, 1307
BssT1I CCWWGG 5 cut(s) 142, 703, 823, 894, 1188
Bst2UI CCWGG 4 cut(s) 211, 464, 558, 972
Bst4CI ACNGT 2 cut(s) 11, 669
BstAUI TGTACA 1 cut(s) 985
BstC8I GCNNGC 4 cut(s) 69, 200, 229, 570
BstDEI CTNAG 6 cut(s) 246, 564, 576, 879, 927, 1062
BstF5I GGATG 6 cut(s) 67, 91, 751, 1157, 1161, 1306
BstH2I RGCGCY 1 cut(s) 505
BstHHI GCGC 1 cut(s) 504
BstKTI GATC 3 cut(s) 487, 543, 1310
BstMAI GTCTC 3 cut(s) 83, 213, 783
BstMBI GATC 3 cut(s) 484, 540, 1307
BstMWI GCNNNNNNNGC 9 cut(s) 237, 501, 578, 581, 587, 593, 1206, 1215, 1370
BstNI CCWGG 4 cut(s) 211, 464, 558, 972
BstNSI RCATGY 1 cut(s) 231
BstSCI CCNGG 4 cut(s) 209, 462, 556, 970
BstSLI GKGCMC 2 cut(s) 416, 964
BstV2I GAAGAC 2 cut(s) 516, 604
BsuI GTATCC 2 cut(s) 263, 511
BsuRI GGCC 5 cut(s) 171, 198, 307, 314, 893
BtgZI GCGATG 1 cut(s) 1215
BtsCI GGATG 6 cut(s) 67, 91, 751, 1157, 1161, 1306
BtsI GCAGTG 2 cut(s) 846, 1401
BtsIMutI CAGTG 5 cut(s) 497, 665, 846, 962, 1401
BveI ACCTGC 1 cut(s) 272
Cac8I GCNNGC 4 cut(s) 69, 200, 229, 570
CaiI CAGNNNCTG 2 cut(s) 563, 575
CfoI GCGC 1 cut(s) 504
Cfr10I RCCGGY 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 1274
CseI GACGC 2 cut(s) 287, 1023
Csp6I GTAC 3 cut(s) 352, 799, 986
CspCI CAANNNNNGTGG 4 cut(s) 766, 801, 1173, 1208
CviAII CATG 5 cut(s) 58, 228, 514, 1108, 1253
CviQI GTAC 3 cut(s) 352, 799, 986
DdeI CTNAG 6 cut(s) 246, 564, 576, 879, 927, 1062
DpnI GATC 3 cut(s) 486, 542, 1309
DpnII GATC 3 cut(s) 484, 540, 1307
EaeI YGGCCR 2 cut(s) 305, 891
Ecl136II GAGCTC 1 cut(s) 878
Eco130I CCWWGG 5 cut(s) 142, 703, 823, 894, 1188
Eco24I GRGCYC 1 cut(s) 880
Eco32I GATATC 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 1274
Eco53kI GAGCTC 1 cut(s) 878
Eco57I CTGAAG 2 cut(s) 114, 528
EcoICRI GAGCTC 1 cut(s) 878
EcoRII CCWGG 4 cut(s) 209, 462, 556, 970
EcoRV GATATC 1 cut(s) 366
EcoT14I CCWWGG 5 cut(s) 142, 703, 823, 894, 1188
EcoT38I GRGCYC 1 cut(s) 880
ErhI CCWWGG 5 cut(s) 142, 703, 823, 894, 1188
FaeI CATG 5 cut(s) 61, 231, 517, 1111, 1256
FaqI GGGAC 2 cut(s) 872, 1021
FatI CATG 5 cut(s) 57, 227, 513, 1107, 1252
FokI GGATG 6 cut(s) 74, 98, 758, 1144, 1148, 1313
FriOI GRGCYC 1 cut(s) 880
FspBI CTAG 5 cut(s) 14, 68, 74, 113, 1079
GlaI GCGC 1 cut(s) 503
GsaI CCCAGC 2 cut(s) 412, 499
GsuI CTGGAG 4 cut(s) 232, 540, 894, 1198
HaeII RGCGCY 1 cut(s) 505
HaeIII GGCC 5 cut(s) 171, 198, 307, 314, 893
HapII CCGG 2 cut(s) 355, 735
HgaI GACGC 2 cut(s) 287, 1023
HhaI GCGC 1 cut(s) 504
Hin1II CATG 5 cut(s) 61, 231, 517, 1111, 1256
Hin6I GCGC 1 cut(s) 502
HinP1I GCGC 1 cut(s) 502
HincII GTYRAC 2 cut(s) 55, 816
HindII GTYRAC 2 cut(s) 55, 816
HinfI GANTC 2 cut(s) 221, 947
HpaI GTTAAC 1 cut(s) 55
HpaII CCGG 2 cut(s) 355, 735
HphI GGTGA 3 cut(s) 296, 435, 479
Hpy166II GTNNAC 6 cut(s) 55, 256, 816, 962, 1069, 1180
Hpy188I TCNGA 5 cut(s) 565, 882, 1046, 1312, 1327
Hpy188III TCNNGA 5 cut(s) 245, 649, 743, 934, 1277
Hpy8I GTNNAC 6 cut(s) 55, 256, 816, 962, 1069, 1180
HpyAV CCTTC 3 cut(s) 89, 161, 1176
HpyCH4III ACNGT 2 cut(s) 11, 669
HpyCH4IV ACGT 3 cut(s) 175, 252, 291
HpyCH4V TGCA 8 cut(s) 227, 231, 962, 1055, 1144, 1262, 1304, 1394
HpyF10VI GCNNNNNNNGC 9 cut(s) 237, 501, 578, 581, 587, 593, 1206, 1215, 1370
HpyF3I CTNAG 6 cut(s) 246, 564, 576, 879, 927, 1062
HpySE526I ACGT 3 cut(s) 175, 252, 291
Hsp92II CATG 5 cut(s) 61, 231, 517, 1111, 1256
HspAI GCGC 1 cut(s) 502
KspAI GTTAAC 1 cut(s) 55
Kzo9I GATC 3 cut(s) 484, 540, 1307
LmnI GCTCC 4 cut(s) 499, 831, 875, 975
LweI GCATC 4 cut(s) 127, 931, 957, 1291
MaeI CTAG 5 cut(s) 14, 68, 74, 113, 1079
MaeII ACGT 3 cut(s) 175, 252, 291
MaeIII GTNAC 3 cut(s) 125, 205, 284
MalI GATC 3 cut(s) 486, 542, 1309
MboI GATC 3 cut(s) 484, 540, 1307
MboII GAAGA 5 cut(s) 360, 521, 540, 543, 604
MhlI GDGCHC 3 cut(s) 416, 880, 964
MlsI TGGCCA 2 cut(s) 307, 893
MluCI AATT 7 cut(s) 121, 296, 625, 805, 866, 899, 919
MluNI TGGCCA 2 cut(s) 307, 893
MlyI GAGTC 2 cut(s) 215, 956
MnlI CCTC 8 cut(s) 76, 115, 118, 209, 260, 571, 656, 1145
Mox20I TGGCCA 2 cut(s) 307, 893
MroXI GAANNNNTTC 1 cut(s) 848
MscI TGGCCA 2 cut(s) 307, 893
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 3 cut(s) 955, 1253, 1257
Msp20I TGGCCA 2 cut(s) 307, 893
MspA1I CMGCKG 2 cut(s) 408, 575
MspI CCGG 2 cut(s) 355, 735
MspR9I CCNGG 4 cut(s) 211, 464, 558, 972
Mva1269I GAATGC 1 cut(s) 1351
MvaI CCWGG 4 cut(s) 211, 464, 558, 972
MwoI GCNNNNNNNGC 9 cut(s) 237, 501, 578, 581, 587, 593, 1206, 1215, 1370
NdeII GATC 3 cut(s) 484, 540, 1307
NheI GCTAGC 1 cut(s) 67
NlaIII CATG 5 cut(s) 61, 231, 517, 1111, 1256
NlaIV GGNNCC 3 cut(s) 833, 1123, 1275
NmeAIII GCCGAG 1 cut(s) 970
NmuCI GTSAC 2 cut(s) 205, 284
NspI RCATGY 1 cut(s) 231
OliI CACNNNNGTG 1 cut(s) 1253
PaeI GCATGC 1 cut(s) 231
PaqCI CACCTGC 1 cut(s) 272
PctI GAATGC 1 cut(s) 1351
PdmI GAANNNNTTC 1 cut(s) 848
PflFI GACNNNGTC 1 cut(s) 290
PleI GAGTC 2 cut(s) 215, 955
PpsI GAGTC 2 cut(s) 215, 955
Psp124BI GAGCTC 1 cut(s) 880
Psp1406I AACGTT 1 cut(s) 175
Psp6I CCWGG 4 cut(s) 209, 462, 556, 970
PspFI CCCAGC 2 cut(s) 408, 495
PspGI CCWGG 4 cut(s) 209, 462, 556, 970
PspN4I GGNNCC 3 cut(s) 833, 1123, 1275
PspPI GGNCC 1 cut(s) 1274
PstNI CAGNNNCTG 2 cut(s) 563, 575
PsyI GACNNNGTC 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 3 cut(s) 353, 800, 987
RsaNI GTAC 3 cut(s) 352, 799, 986
RseI CAYNNNNRTG 3 cut(s) 955, 1253, 1257
SacI GAGCTC 1 cut(s) 880
SaqAI TTAA 1 cut(s) 54
Sau3AI GATC 3 cut(s) 484, 540, 1307
Sau96I GGNCC 1 cut(s) 1274
ScaI AGTACT 1 cut(s) 800
SchI GAGTC 2 cut(s) 215, 956
ScrFI CCNGG 4 cut(s) 211, 464, 558, 972
SduI GDGCHC 3 cut(s) 416, 880, 964
SfaNI GCATC 4 cut(s) 127, 931, 957, 1291
SinI GGWCC 1 cut(s) 1274
SmiMI CAYNNNNRTG 3 cut(s) 955, 1253, 1257
SmlI CTYRAG 1 cut(s) 649
SmoI CTYRAG 1 cut(s) 649
SphI GCATGC 1 cut(s) 231
Sse9I AATT 7 cut(s) 121, 296, 625, 805, 866, 899, 919
SsiI CCGC 5 cut(s) 406, 482, 761, 764, 1364
SspI AATATT 1 cut(s) 635
SspMI CTAG 5 cut(s) 14, 68, 74, 113, 1079
SstI GAGCTC 1 cut(s) 880
StyD4I CCNGG 4 cut(s) 209, 462, 556, 970
StyI CCWWGG 5 cut(s) 142, 703, 823, 894, 1188
TaaI ACNGT 2 cut(s) 11, 669
TaiI ACGT 3 cut(s) 178, 255, 294
TaqI TCGA 1 cut(s) 371
TaqII GACCGA 1 cut(s) 953
TasI AATT 7 cut(s) 121, 296, 625, 805, 866, 899, 919
TatI WGTACW 2 cut(s) 798, 985
TauI GCSGC 2 cut(s) 764, 767
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 5 cut(s) 497, 672, 846, 969, 1401
TseFI GTSAC 2 cut(s) 205, 284
Tsp45I GTSAC 2 cut(s) 205, 284
TspDTI ATGAA 6 cut(s) 17, 412, 893, 1146, 1187, 1358
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 5 cut(s) 497, 672, 846, 969, 1401
Tth111I GACNNNGTC 1 cut(s) 290
VneI GTGCAC 1 cut(s) 960
VpaK11BI GGWCC 1 cut(s) 1274
XapI RAATTY 5 cut(s) 296, 625, 866, 899, 919
XceI RCATGY 1 cut(s) 231
XcmI CCANNNNNNNNNTGG 1 cut(s) 470
XmnI GAANNNNTTC 1 cut(s) 848
XspI CTAG 5 cut(s) 14, 68, 74, 113, 1079
ZrmI AGTACT 1 cut(s) 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.