Rh7BG160700

cellulase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010905
Physical Location & Seq
Reverse (-)
12320005 .. 12418606
98602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG160700.1

Sequence Viewer

Length: 1239 bp
ATGAAAGCCATACGGAGAAGATTTCGTGAAATTGTATTTGATCGTGGTGGGGTGGCCACGGCGGACCCAAAAGCCAGCTCTACCTTACTTGTACACTTGCCTCCATTAAACGTGGGAGATGGAAATGTGGATCACCAGTGCTGGGAGCGTCCCGAAGACATGGACACATCACGAAAGCTCTACAAGATCACTTCGAGTTCTCCAGGCAGTGAGGCCGCAGCTGAGGCTGCTGCTGCCCTCGCTGCAGCCTCAATTGTCTTTAAGACAGTTGACTCCACCTATTCGGCAAAGCTCTCAAGTCATTCCCAATCTCTGTTTGACTTGGCTGACAAGTATAGAGGGTCTTACCAAGTCTCTTGCCCTTTCTACTGCTCCTACTCTGGCTACCAGGATGAGCTGTTATGGGCTGCAGCTTGGCTATACAAGGCAAGTGGAAACAGAAGCTATTTTAGTTATGTGGTAAACAACCAAGGATGGAGTCAGGCAATGTCTGAGTTCAGTTGGGATAACAAATTTGTTGGAGCTCAGACTTTACTAGCCAAGGAATACCATGCTGGAAAGACTAATTTGCTCAAGTACAAGACCAATGCGGAGTCATTTATATGTGCAGTGATGCCAGGGAGTAGCTCTACACAAGTTCAAAGAACACCCGGTGGACTTCTGTTTATTAGAGACAGTAGTAACTTGCAGTATGTTACAAGCTCTACCTTGGTGCTATTCATCTACTCAAAAACCATAAGTAGTACACAAACTGGTGGAGTTCAATGTGGCTCCACGTTTTTCTCTGCTGCGAAAATCAAAGCCTTTGCTAAAGCTCAGGTATTCGATTTTCTGGAAAATTTTGCAAAAAACAATTTGATATGTTATGTTGTGAGACTGTCGATTGTAGACCTACGTGACAACTTTTTCATATATGATCAGGTGGACTACATCCTTGGAGCCAACCCCAAGCAGATGTCATACATGGTGGGTTTTGGTACTTCATACCCAACAAAATTGCACCATAGAGGTTCATCCATCCCTTCAATCAAGACCCTCAACACCAAGGTGGACTGCAATGGTGGCTATACCTATTACAATTTTGGGAGTCCAAATCCAAATACTCATGTGGGTGCAATTGTTGGGGGTCCTGATGTGAATGACCAGTTCCAGAATGCAAGATCAGACTATTCTCATTCTGAACCTACAACTTATATCAATGCAGCTTTTGTGGGATCAGCAGCTGCTTTACTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

412

Amino Acids

45.22

Weight (kDa)

8.64

Isoelectric Point (pI)

30.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 37 - 405 1.6e-97 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010905)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09740 AT4G23560
fragaria_vesca FvH4_5g03220
malus_domestica MD06G1091600.v1.1
prunus_persica Prupe.5G106800_v2.0.a1 Prupe.5G106800_v2.0.a1
pyrus_communis pycom06g08750
rosa_chinensis RchiOBHm_Chr7g0196541
rosa_laevigata RLG00000004006
rosa_multiflora Rmu_sc0013350.1_g000007
rosa_roxburghii Rroxscaffold_3G00259210
rosa_rugosa Rorug07G0034400 Rorug07G0034500 Rorug07G0034600
rosa_samantha Rh1BG041400 Rh7AG158700 Rh7BG160700 Rh7CG167100 Rh7DG159900
rosa_wichuraiana Rw7G013870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 888
AciI CCGC 3 cut(s) 62, 216, 590
AclWI GGATC 2 cut(s) 138, 1222
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 2 cut(s) 512, 838
AdeI CACNNNGTG 1 cut(s) 653
AfaI GTAC 4 cut(s) 93, 578, 745, 979
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 3 cut(s) 641, 764, 1026
AjnI CCWGG 3 cut(s) 202, 387, 616
AleI CACNNNNGTG 1 cut(s) 1046
Alw21I GWGCWC 1 cut(s) 526
Alw26I GTCTC 3 cut(s) 358, 666, 868
AlwI GGATC 2 cut(s) 138, 1222
AlwNI CAGNNNCTG 1 cut(s) 1223
AoxI GGCC 2 cut(s) 54, 213
ApoI RAATTY 2 cut(s) 512, 838
AspS9I GGNCC 2 cut(s) 64, 1127
AsuC2I CCSGG 1 cut(s) 651
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 2 cut(s) 64, 1127
BalI TGGCCA 1 cut(s) 56
BanII GRGCYC 1 cut(s) 526
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 526
BbvCI CCTCAGC 1 cut(s) 222
BccI CCATC 3 cut(s) 113, 468, 1025
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 3 cut(s) 204, 389, 618
BclI TGATCA 1 cut(s) 916
BcnI CCSGG 1 cut(s) 651
BcoDI GTCTC 3 cut(s) 358, 666, 868
BfaI CTAG 1 cut(s) 536
BfmI CTRYAG 2 cut(s) 243, 408
Bme1390I CCNGG 4 cut(s) 204, 389, 618, 651
Bme18I GGWCC 2 cut(s) 64, 1127
BmgT120I GGNCC 2 cut(s) 64, 1127
BmiI GGNNCC 4 cut(s) 66, 772, 940, 1128
BmrFI CCNGG 4 cut(s) 204, 389, 618, 651
BmsI GCATC 1 cut(s) 603
BpiI GAAGAC 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 186
Bpu10I CCTNAGC 2 cut(s) 222, 816
BpuEI CTTGAG 2 cut(s) 280, 557
BpuMI CCSGG 1 cut(s) 651
BsaAI YACGTR 1 cut(s) 896
BsaJI CCNNGG 7 cut(s) 57, 469, 540, 617, 708, 934, 1044
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse1I ACTGG 3 cut(s) 136, 757, 1144
Bse3DI GCAATG 2 cut(s) 492, 1063
BseBI CCWGG 3 cut(s) 204, 389, 618
BseDI CCNNGG 7 cut(s) 57, 469, 540, 617, 708, 934, 1044
BseGI GGATG 5 cut(s) 397, 479, 930, 1013, 1017
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMI GCAATG 2 cut(s) 492, 1063
BseMII CTCAG 4 cut(s) 213, 483, 539, 830
BseNI ACTGG 3 cut(s) 136, 757, 1144
BseYI CCCAGC 1 cut(s) 141
BsgI GTGCAG 1 cut(s) 627
BshFI GGCC 2 cut(s) 56, 215
BsiHKAI GWGCWC 1 cut(s) 526
BsiSI CCGG 1 cut(s) 651
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 3 cut(s) 358, 666, 868
BsmFI GGGAC 1 cut(s) 135
BsmI GAATGC 1 cut(s) 1159
BsnI GGCC 2 cut(s) 56, 215
Bsp1286I GDGCHC 1 cut(s) 526
Bsp1407I TGTACA 1 cut(s) 91
Bsp143I GATC 6 cut(s) 40, 130, 186, 916, 1160, 1214
BspACI CCGC 3 cut(s) 62, 216, 590
BspANI GGCC 2 cut(s) 56, 215
BspCNI CTCAG 4 cut(s) 214, 484, 538, 829
BspLI GGNNCC 4 cut(s) 66, 772, 940, 1128
BspMAI CTGCAG 2 cut(s) 247, 412
BspPI GGATC 2 cut(s) 138, 1222
BsrDI GCAATG 2 cut(s) 492, 1063
BsrGI TGTACA 1 cut(s) 91
BsrI ACTGG 3 cut(s) 136, 757, 1144
BssECI CCNNGG 7 cut(s) 57, 469, 540, 617, 708, 934, 1044
BssMI GATC 6 cut(s) 40, 130, 186, 916, 1160, 1214
BssT1I CCWWGG 5 cut(s) 469, 540, 708, 934, 1044
Bst2UI CCWGG 3 cut(s) 204, 389, 618
Bst4CI ACNGT 3 cut(s) 268, 677, 879
BstAUI TGTACA 1 cut(s) 91
BstBAI YACGTR 1 cut(s) 896
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 4 cut(s) 222, 492, 525, 816
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 5 cut(s) 397, 479, 930, 1013, 1017
BstKTI GATC 6 cut(s) 43, 133, 189, 919, 1163, 1217
BstMAI GTCTC 3 cut(s) 358, 666, 868
BstMBI GATC 6 cut(s) 40, 130, 186, 916, 1160, 1214
BstMWI GCNNNNNNNGC 7 cut(s) 224, 227, 233, 239, 242, 1062, 1232
BstNI CCWGG 3 cut(s) 204, 389, 618
BstSCI CCNGG 4 cut(s) 202, 387, 616, 649
BstSFI CTRYAG 2 cut(s) 243, 408
BstV2I GAAGAC 1 cut(s) 162
BsuRI GGCC 2 cut(s) 56, 215
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 5 cut(s) 397, 479, 930, 1013, 1017
BtsI GCAGTG 2 cut(s) 214, 615
BtsIMutI CAGTG 3 cut(s) 143, 214, 615
Cac8I GCNNGC 1 cut(s) 76
CaiI CAGNNNCTG 1 cut(s) 1223
Cfr13I GGNCC 2 cut(s) 64, 1127
CseI GACGC 1 cut(s) 137
Csp6I GTAC 4 cut(s) 92, 577, 744, 978
CspCI CAANNNNNGTGG 2 cut(s) 412, 447
CviAII CATG 4 cut(s) 160, 551, 964, 1106
CviQI GTAC 4 cut(s) 92, 577, 744, 978
DdeI CTNAG 4 cut(s) 222, 492, 525, 816
DpnI GATC 6 cut(s) 42, 132, 188, 918, 1162, 1216
DpnII GATC 6 cut(s) 40, 130, 186, 916, 1160, 1214
DraIII CACNNNGTG 1 cut(s) 653
EaeI YGGCCR 1 cut(s) 54
EciI GGCGGA 1 cut(s) 77
Ecl136II GAGCTC 1 cut(s) 524
Eco130I CCWWGG 5 cut(s) 469, 540, 708, 934, 1044
Eco24I GRGCYC 1 cut(s) 526
Eco47I GGWCC 2 cut(s) 64, 1127
Eco53kI GAGCTC 1 cut(s) 524
EcoICRI GAGCTC 1 cut(s) 524
EcoO109I RGGNCCY 1 cut(s) 1127
EcoRII CCWGG 3 cut(s) 202, 387, 616
EcoT14I CCWWGG 5 cut(s) 469, 540, 708, 934, 1044
EcoT38I GRGCYC 1 cut(s) 526
ErhI CCWWGG 5 cut(s) 469, 540, 708, 934, 1044
FaeI CATG 4 cut(s) 163, 554, 967, 1109
FaqI GGGAC 1 cut(s) 135
FatI CATG 4 cut(s) 159, 550, 963, 1105
FbaI TGATCA 1 cut(s) 916
FblI GTMKAC 1 cut(s) 888
FokI GGATG 5 cut(s) 404, 486, 917, 1000, 1004
FriOI GRGCYC 1 cut(s) 526
FspBI CTAG 1 cut(s) 536
GsaI CCCAGC 1 cut(s) 145
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 2 cut(s) 56, 215
HapII CCGG 1 cut(s) 651
HgaI GACGC 1 cut(s) 137
Hin1II CATG 4 cut(s) 163, 554, 967, 1109
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 4 cut(s) 272, 478, 593, 1087
HpaII CCGG 1 cut(s) 651
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 8 cut(s) 94, 271, 463, 656, 746, 889, 925, 1051
Hpy188I TCNGA 4 cut(s) 493, 528, 1165, 1180
Hpy188III TCNNGA 7 cut(s) 26, 152, 171, 833, 1030, 1130, 1150
Hpy8I GTNNAC 8 cut(s) 94, 271, 463, 656, 746, 889, 925, 1051
HpyAV CCTTC 1 cut(s) 1032
HpyCH4III ACNGT 3 cut(s) 268, 677, 879
HpyCH4IV ACGT 3 cut(s) 111, 776, 895
HpyF10VI GCNNNNNNNGC 7 cut(s) 224, 227, 233, 239, 242, 1062, 1232
HpyF3I CTNAG 4 cut(s) 222, 492, 525, 816
HpySE526I ACGT 3 cut(s) 111, 776, 895
Hsp92II CATG 4 cut(s) 163, 554, 967, 1109
Ksp22I TGATCA 1 cut(s) 916
Kzo9I GATC 6 cut(s) 40, 130, 186, 916, 1160, 1214
LmnI GCTCC 5 cut(s) 145, 377, 521, 776, 938
LweI GCATC 1 cut(s) 603
MaeI CTAG 1 cut(s) 536
MaeII ACGT 3 cut(s) 111, 776, 895
MaeIII GTNAC 3 cut(s) 680, 694, 896
MalI GATC 6 cut(s) 42, 132, 188, 918, 1162, 1216
MboI GATC 6 cut(s) 40, 130, 186, 916, 1160, 1214
MboII GAAGA 2 cut(s) 30, 167
MfeI CAATTG 2 cut(s) 252, 1116
MhlI GDGCHC 1 cut(s) 526
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 9 cut(s) 30, 252, 512, 565, 838, 853, 995, 1078, 1116
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 4 cut(s) 266, 487, 602, 1096
MmeI TCCRAC 1 cut(s) 499
MnlI CCTC 8 cut(s) 111, 205, 217, 248, 259, 332, 1001, 1046
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MseI TTAA 3 cut(s) 107, 261, 1237
MslI CAYNNNNRTG 3 cut(s) 601, 1046, 1110
Msp20I TGGCCA 1 cut(s) 56
MspA1I CMGCKG 2 cut(s) 221, 1223
MspI CCGG 1 cut(s) 651
MspR9I CCNGG 4 cut(s) 204, 389, 618, 651
MunI CAATTG 2 cut(s) 252, 1116
Mva1269I GAATGC 1 cut(s) 1159
MvaI CCWGG 3 cut(s) 204, 389, 618
MwoI GCNNNNNNNGC 7 cut(s) 224, 227, 233, 239, 242, 1062, 1232
NciI CCSGG 1 cut(s) 651
NdeII GATC 6 cut(s) 40, 130, 186, 916, 1160, 1214
NlaIII CATG 4 cut(s) 163, 554, 967, 1109
NlaIV GGNNCC 4 cut(s) 66, 772, 940, 1128
NmuCI GTSAC 1 cut(s) 896
OliI CACNNNNGTG 1 cut(s) 1046
PctI GAATGC 1 cut(s) 1159
PleI GAGTC 4 cut(s) 266, 486, 601, 1095
PpsI GAGTC 4 cut(s) 266, 486, 601, 1095
Ppu21I YACGTR 1 cut(s) 896
PpuMI RGGWCCY 1 cut(s) 1127
Psp124BI GAGCTC 1 cut(s) 526
Psp5II RGGWCCY 1 cut(s) 1127
Psp6I CCWGG 3 cut(s) 202, 387, 616
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 3 cut(s) 202, 387, 616
PspN4I GGNNCC 4 cut(s) 66, 772, 940, 1128
PspPI GGNCC 2 cut(s) 64, 1127
PspPPI RGGWCCY 1 cut(s) 1127
PstI CTGCAG 2 cut(s) 247, 412
PstNI CAGNNNCTG 1 cut(s) 1223
PvuII CAGCTG 2 cut(s) 221, 1223
RsaI GTAC 4 cut(s) 93, 578, 745, 979
RsaNI GTAC 4 cut(s) 92, 577, 744, 978
RseI CAYNNNNRTG 3 cut(s) 601, 1046, 1110
SacI GAGCTC 1 cut(s) 526
SaqAI TTAA 3 cut(s) 107, 261, 1237
Sau3AI GATC 6 cut(s) 40, 130, 186, 916, 1160, 1214
Sau96I GGNCC 2 cut(s) 64, 1127
SchI GAGTC 4 cut(s) 266, 487, 602, 1096
ScrFI CCNGG 4 cut(s) 204, 389, 618, 651
SduI GDGCHC 1 cut(s) 526
SfaNI GCATC 1 cut(s) 603
SfcI CTRYAG 2 cut(s) 243, 408
SinI GGWCC 2 cut(s) 64, 1127
SmiMI CAYNNNNRTG 3 cut(s) 601, 1046, 1110
SmlI CTYRAG 2 cut(s) 295, 572
SmoI CTYRAG 2 cut(s) 295, 572
Sse9I AATT 9 cut(s) 30, 252, 512, 565, 838, 853, 995, 1078, 1116
SsiI CCGC 3 cut(s) 62, 216, 590
SspMI CTAG 1 cut(s) 536
SstI GAGCTC 1 cut(s) 526
StyD4I CCNGG 4 cut(s) 202, 387, 616, 649
StyI CCWWGG 5 cut(s) 469, 540, 708, 934, 1044
TaaI ACNGT 3 cut(s) 268, 677, 879
TaiI ACGT 3 cut(s) 114, 779, 898
TaqI TCGA 3 cut(s) 194, 825, 881
TasI AATT 9 cut(s) 30, 252, 512, 565, 838, 853, 995, 1078, 1116
TatI WGTACW 3 cut(s) 91, 576, 743
TauI GCSGC 1 cut(s) 218
Tru1I TTAA 3 cut(s) 107, 261, 1237
Tru9I TTAA 3 cut(s) 107, 261, 1237
TscAI CASTG 3 cut(s) 143, 214, 615
TseFI GTSAC 1 cut(s) 896
Tsp45I GTSAC 1 cut(s) 896
TspDTI ATGAA 5 cut(s) 17, 709, 898, 972, 1002
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 3 cut(s) 143, 214, 615
VpaK11BI GGWCC 2 cut(s) 64, 1127
XapI RAATTY 2 cut(s) 512, 838
XmiI GTMKAC 1 cut(s) 888
XspI CTAG 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.