Rorug07G0034600

cellulase activity

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
2450023 .. 2453058
3036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0034600.1

Sequence Viewer

Length: 756 bp
ATGGCATCTCTTGAAGAAGAGAACCCTAATGATGATACCCTTAAATTTATGGAACTTGCTATAGAACAGGCAAAGCTTGCTTTGGACAGCCTTGAAGTTCCTGTTGGCTGTGTGATTGTTGAAGATGGAAAGGTCATAGCGTGTGGAAGGAATCAAACTAATGAGACACGAAATGCCACGAGGCACGCAGAGATGGAAGCCATTGATACTCTTCTTAAGCAGTGGAGAGAAAAAAGGCTTTCAACGTCAGAAGTTGCTGAAATTTTTTCAAAATGTAACCTCTATGTTACATGTGAACCATGCATAATGTGTGCAGCAGCTTTATCAATTGTTGGTATCAAGGAAGTATTTTATGGCTGTGCTAATGATAAATTTGGTGGGTGTGGATCAATACTGTCATTGCATTCAAGCAGCTCTGAGCCACTCATGAGCCATGATGGGAAGGTTACATCAGTAAAATTTTCTAGGCACCATGTTCTCCGAGTATCTGAGTTCTTTGGTTCTGTGATCTTCTACTCAAGATGGTTATTCCATCAGTCACTTTCTTCTTTCTCTTTGTTGTATGGTGGTGGTGTATCACAGCGGAAAGGTTTCAAATGCACTGGAGGGATAATGGCATCAGAAGCAGTCTCTCTTTTCCGCAATTTTTACGAGCAAGGAAACCCTAATGGTTTAATCAAGTTGTGGATTAGACCATCTTGCCTTTACAGTAAAGTTGACCAACTAGTTCTTAAGGGTTGCCAGAAGGGGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

251

Amino Acids

27.79

Weight (kDa)

6.98

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MafB19-deam PF14437 12 - 131 1.2e-17 MafB19-like deaminase
dCMP_cyt_deam_1 PF00383 14 - 120 7.7e-24 Cytidine and deoxycytidylate deaminase zinc-binding region
Bd3614-deam PF14439 38 - 111 1.2e-06 Bd3614-like deaminase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010905)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 468
AciI CCGC 2 cut(s) 583, 640
AclWI GGATC 1 cut(s) 394
AcsI RAATTY 4 cut(s) 44, 261, 371, 458
AflII CTTAAG 2 cut(s) 215, 731
AflIII ACRYGT 1 cut(s) 290
AgsI TTSAA 7 cut(s) 14, 95, 122, 243, 270, 408, 595
AhlI ACTAGT 1 cut(s) 724
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
AluBI AGCT 3 cut(s) 76, 320, 414
AluI AGCT 3 cut(s) 76, 320, 414
Alw26I GTCTC 2 cut(s) 158, 634
AlwI GGATC 1 cut(s) 394
ApeKI GCWGC 3 cut(s) 314, 317, 411
ApoI RAATTY 4 cut(s) 44, 261, 371, 458
Asp700I GAANNNNTTC 1 cut(s) 590
BanI GGYRCC 1 cut(s) 468
BauI CACGAG 1 cut(s) 178
BbvI GCAGC 3 cut(s) 326, 329, 423
BccI CCATC 6 cut(s) 119, 187, 431, 516, 540, 703
BcoDI GTCTC 2 cut(s) 158, 634
BcuI ACTAGT 1 cut(s) 724
BfaI CTAG 2 cut(s) 465, 725
BfmI CTRYAG 1 cut(s) 60
BfrI CTTAAG 2 cut(s) 215, 731
BisI GCNGC 3 cut(s) 315, 318, 412
BlsI GCNGC 3 cut(s) 316, 319, 413
BmiI GGNNCC 1 cut(s) 470
BmsI GCATC 2 cut(s) 14, 626
BpmI CTGGAG 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 502
Bse1I ACTGG 1 cut(s) 607
Bse3DI GCAATG 1 cut(s) 398
BseGI GGATG 1 cut(s) 756
BseMI GCAATG 1 cut(s) 398
BseMII CTCAG 2 cut(s) 408, 480
BseNI ACTGG 1 cut(s) 607
BseXI GCAGC 3 cut(s) 326, 329, 423
BsgI GTGCAG 1 cut(s) 333
BshNI GGYRCC 1 cut(s) 468
BsmAI GTCTC 2 cut(s) 158, 634
BsmI GAATGC 1 cut(s) 403
Bsp143I GATC 2 cut(s) 386, 507
BspACI CCGC 2 cut(s) 583, 640
BspCNI CTCAG 2 cut(s) 409, 481
BspHI TCATGA 1 cut(s) 426
BspLI GGNNCC 1 cut(s) 470
BspPI GGATC 1 cut(s) 394
BspT107I GGYRCC 1 cut(s) 468
BspTI CTTAAG 2 cut(s) 215, 731
BsrDI GCAATG 1 cut(s) 398
BsrI ACTGG 1 cut(s) 607
BssMI GATC 2 cut(s) 386, 507
BssSI CACGAG 1 cut(s) 178
Bst2BI CACGAG 1 cut(s) 178
Bst4CI ACNGT 2 cut(s) 396, 710
Bst6I CTCTTC 2 cut(s) 12, 216
BstAFI CTTAAG 2 cut(s) 215, 731
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 78, 186
BstDEI CTNAG 2 cut(s) 417, 489
BstF5I GGATG 1 cut(s) 756
BstKTI GATC 2 cut(s) 389, 510
BstMAI GTCTC 2 cut(s) 158, 634
BstMBI GATC 2 cut(s) 386, 507
BstMWI GCNNNNNNNGC 2 cut(s) 77, 623
BstNSI RCATGY 1 cut(s) 294
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 326, 329, 423
BtsCI GGATG 1 cut(s) 756
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 2 cut(s) 227, 600
Cac8I GCNNGC 2 cut(s) 78, 186
CciI TCATGA 1 cut(s) 426
CviAII CATG 5 cut(s) 291, 300, 427, 434, 473
DdeI CTNAG 2 cut(s) 417, 489
DpnI GATC 2 cut(s) 388, 509
DpnII GATC 2 cut(s) 386, 507
Eam1104I CTCTTC 2 cut(s) 12, 216
EarI CTCTTC 2 cut(s) 12, 216
EcoT22I ATGCAT 1 cut(s) 305
FaeI CATG 5 cut(s) 294, 303, 430, 437, 476
FatI CATG 5 cut(s) 290, 299, 426, 433, 472
Fnu4HI GCNGC 3 cut(s) 315, 318, 412
Fsp4HI GCNGC 3 cut(s) 315, 318, 412
FspBI CTAG 2 cut(s) 465, 725
GluI GCNGC 3 cut(s) 315, 318, 412
GsuI CTGGAG 1 cut(s) 624
Hin1II CATG 5 cut(s) 294, 303, 430, 437, 476
HincII GTYRAC 1 cut(s) 718
HindII GTYRAC 1 cut(s) 718
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 1 cut(s) 151
Hpy166II GTNNAC 2 cut(s) 296, 718
Hpy188I TCNGA 5 cut(s) 250, 418, 482, 490, 622
Hpy188III TCNNGA 3 cut(s) 11, 427, 519
Hpy8I GTNNAC 2 cut(s) 296, 718
HpyAV CCTTC 3 cut(s) 141, 436, 739
HpyCH4III ACNGT 2 cut(s) 396, 710
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 4 cut(s) 303, 314, 403, 600
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 623
HpyF3I CTNAG 2 cut(s) 417, 489
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 5 cut(s) 294, 303, 430, 437, 476
Kzo9I GATC 2 cut(s) 386, 507
LpnPI CCDG 3 cut(s) 53, 114, 588
Lsp1109I GCAGC 3 cut(s) 326, 329, 423
LweI GCATC 2 cut(s) 14, 626
MaeI CTAG 2 cut(s) 465, 725
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 4 cut(s) 275, 286, 445, 537
MalI GATC 2 cut(s) 388, 509
MboI GATC 2 cut(s) 386, 507
MboII GAAGA 6 cut(s) 26, 29, 134, 203, 502, 537
MfeI CAATTG 1 cut(s) 327
MluCI AATT 6 cut(s) 44, 261, 327, 371, 458, 643
MnlI CCTC 3 cut(s) 174, 290, 599
Mph1103I ATGCAT 1 cut(s) 305
MroXI GAANNNNTTC 1 cut(s) 590
MseI TTAA 4 cut(s) 42, 216, 674, 732
MspA1I CMGCKG 1 cut(s) 583
MspCI CTTAAG 2 cut(s) 215, 731
MunI CAATTG 1 cut(s) 327
Mva1269I GAATGC 1 cut(s) 403
MwoI GCNNNNNNNGC 2 cut(s) 77, 623
NdeII GATC 2 cut(s) 386, 507
NlaIII CATG 5 cut(s) 294, 303, 430, 437, 476
NlaIV GGNNCC 1 cut(s) 470
NmuCI GTSAC 1 cut(s) 537
NsiI ATGCAT 1 cut(s) 305
NspI RCATGY 1 cut(s) 294
PagI TCATGA 1 cut(s) 426
PciI ACATGT 1 cut(s) 290
PctI GAATGC 1 cut(s) 403
PdmI GAANNNNTTC 1 cut(s) 590
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 3 cut(s) 316, 319, 413
PscI ACATGT 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 470
SaqAI TTAA 4 cut(s) 42, 216, 674, 732
SatI GCNGC 3 cut(s) 315, 318, 412
Sau3AI GATC 2 cut(s) 386, 507
SetI ASST 8 cut(s) 78, 135, 248, 282, 322, 416, 447, 592
SfaNI GCATC 2 cut(s) 14, 626
SfcI CTRYAG 1 cut(s) 60
SmlI CTYRAG 3 cut(s) 215, 517, 731
SmoI CTYRAG 3 cut(s) 215, 517, 731
SpeI ACTAGT 1 cut(s) 724
Sse9I AATT 6 cut(s) 44, 261, 327, 371, 458, 643
SsiI CCGC 2 cut(s) 583, 640
SspMI CTAG 2 cut(s) 465, 725
TaaI ACNGT 2 cut(s) 396, 710
TaiI ACGT 1 cut(s) 248
TasI AATT 6 cut(s) 44, 261, 327, 371, 458, 643
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 4 cut(s) 42, 216, 674, 732
Tru9I TTAA 4 cut(s) 42, 216, 674, 732
TscAI CASTG 2 cut(s) 227, 607
TseFI GTSAC 1 cut(s) 537
TseI GCWGC 3 cut(s) 314, 317, 411
Tsp45I GTSAC 1 cut(s) 537
TspRI CASTG 2 cut(s) 227, 607
Vha464I CTTAAG 2 cut(s) 215, 731
XapI RAATTY 4 cut(s) 44, 261, 371, 458
XceI RCATGY 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 590
XspI CTAG 2 cut(s) 465, 725
Zsp2I ATGCAT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.