Rh7CG167100

cellulase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0010905
Physical Location & Seq
Reverse (-)
13914312 .. 13917073
2762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG167100.1

Sequence Viewer

Length: 975 bp
ATGGGGCATGGTAGAGTTGTTGCATGTGTTTTGGTATTGTGGTGTTTTTTGAATGAGATAGTCTCAGCCATTGACTATGAAGATGCGCTTGGCAAATCTATATTGTTCTTCGAAGGCCAACGCTCCGGGAAGTTGCCGACCACCCAGCGAGTATCTTGGAGAGGAGACTCTGCACTTTCCGATGGCCAGCTTGAAGGAGTAAATTTGACTGGAGGATACTATGATGCAGGCGACAACGTGAAGTTCGTGTGGCCAATGGCATATAGTGTGAGCTTGTTGAGTTGGAGTCTCATTGAGTACCAGCAGCAGATATCTTCAGCAAACCAGCTTGCATACGTCCAGAGAGCAATCCGCTGGGGCACAGACTTCATAATAAAAGCTCACCTTTCGCCCACCACCTTCTACACTCAGGTAGGAGATGGAAATGTGGATCACCAGTGCTGGGAGCGTCCCGAAGACATGGACACATCGCGAAAGCTCTACAAGATCACTTCGAGTTCTCCAGGCAGTGAGGCCGCAGCTGAGGCTGCTGCTGCCCTCGCTGCAGCCTCAATTGTCTTTAAGACAGTTGACTCCACCTATTCGGCAAAGCTCTCAAGTCGTTCCCAATCTCTGTTTGACTTGGCCGACAAGTATAGAGGGTCTTACCAAGTCTCTTGCCCTTTCTACTGCTCCTACTCTGGCTACCAGGATGAGCTGTTATGGGCTGCGGCTTGGCTATACAAGGCAAGTGGAAACAGAAGCTATTTTAGTTATGTGGTAAACAACCAAGGATGGAGTCAGGCAATGTCTGAGTTCAGTTGGGATAACAAATTTGTTGGAGCTCAGACTTTACTAGCCAAGGAATACCATGCTGGAAATACTGATTTGCTCAAGTACAAGACCCATGCGGAGTCATTTATATGTGCAGTGATGCCAAGGAGTAGCTCTACACAAGTTCAAAGAACACCCGGTATGATCATCTTACGGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

324

Amino Acids

36.14

Weight (kDa)

6.22

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 26 - 322 2.1e-107 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010905)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09740 AT4G23560
fragaria_vesca FvH4_5g03220
malus_domestica MD06G1091600.v1.1
prunus_persica Prupe.5G106800_v2.0.a1 Prupe.5G106800_v2.0.a1
pyrus_communis pycom06g08750
rosa_chinensis RchiOBHm_Chr7g0196541
rosa_laevigata RLG00000004006
rosa_multiflora Rmu_sc0013350.1_g000007
rosa_roxburghii Rroxscaffold_3G00259210
rosa_rugosa Rorug07G0034400 Rorug07G0034500 Rorug07G0034600
rosa_samantha Rh1BG041400 Rh7AG158700 Rh7BG160700 Rh7CG167100 Rh7DG159900
rosa_wichuraiana Rw7G013870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 472
AciI CCGC 4 cut(s) 352, 516, 710, 890
AclWI GGATC 1 cut(s) 438
AcoI YGGCCR 3 cut(s) 184, 251, 624
AcsI RAATTY 2 cut(s) 202, 812
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 2 cut(s) 299, 878
AfiI CCNNNNNNNGG 1 cut(s) 442
AgsI TTSAA 3 cut(s) 52, 194, 941
AjnI CCWGG 2 cut(s) 502, 687
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
Alw21I GWGCWC 1 cut(s) 826
Alw26I GTCTC 4 cut(s) 67, 159, 293, 658
AlwI GGATC 1 cut(s) 438
AoxI GGCC 5 cut(s) 115, 184, 251, 513, 624
ApeKI GCWGC 8 cut(s) 304, 518, 527, 530, 533, 542, 545, 707
ApoI RAATTY 2 cut(s) 202, 812
AspLEI GCGC 1 cut(s) 88
AsuC2I CCSGG 2 cut(s) 127, 951
AsuHPI GGTGA 2 cut(s) 374, 425
AsuII TTCGAA 1 cut(s) 111
BaeGI GKGCMC 1 cut(s) 362
BalI TGGCCA 2 cut(s) 186, 253
BanII GRGCYC 1 cut(s) 826
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 826
BbvCI CCTCAGC 1 cut(s) 522
BbvI GCAGC 8 cut(s) 316, 514, 517, 520, 529, 530, 557, 694
BccI CCATC 3 cut(s) 176, 413, 768
BciT130I CCWGG 2 cut(s) 504, 689
BciVI GTATCC 1 cut(s) 209
BclI TGATCA 1 cut(s) 957
BcnI CCSGG 2 cut(s) 127, 951
BcoDI GTCTC 4 cut(s) 67, 159, 293, 658
BfaI CTAG 1 cut(s) 836
BfmI CTRYAG 1 cut(s) 543
BfuI GTATCC 1 cut(s) 209
Bme1390I CCNGG 4 cut(s) 127, 504, 689, 951
BmrFI CCNGG 4 cut(s) 127, 504, 689, 951
BmsI GCATC 3 cut(s) 73, 214, 903
BpiI GAAGAC 1 cut(s) 462
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpmI CTGGAG 2 cut(s) 231, 486
Bpu10I CCTNAGC 1 cut(s) 522
Bpu14I TTCGAA 1 cut(s) 111
BpuEI CTTGAG 2 cut(s) 580, 857
BpuMI CCSGG 2 cut(s) 127, 951
BsaJI CCNNGG 3 cut(s) 769, 840, 917
Bsc4I CCNNNNNNNGG 1 cut(s) 442
Bse1I ACTGG 2 cut(s) 214, 436
Bse3DI GCAATG 1 cut(s) 792
BseBI CCWGG 2 cut(s) 504, 689
BseDI CCNNGG 3 cut(s) 769, 840, 917
BseGI GGATG 2 cut(s) 697, 779
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMI GCAATG 1 cut(s) 792
BseMII CTCAG 5 cut(s) 78, 422, 513, 783, 839
BseNI ACTGG 2 cut(s) 214, 436
BseRI GAGGAG 1 cut(s) 177
BseSI GKGCMC 1 cut(s) 362
BseXI GCAGC 8 cut(s) 316, 514, 517, 520, 529, 530, 557, 694
BseYI CCCAGC 3 cut(s) 144, 354, 441
BsgI GTGCAG 2 cut(s) 156, 927
Bsh1236I CGCG 1 cut(s) 472
BshFI GGCC 5 cut(s) 117, 186, 253, 515, 626
BsiHKAI GWGCWC 1 cut(s) 826
BsiSI CCGG 2 cut(s) 126, 951
BslFI GGGAC 1 cut(s) 435
BslI CCNNNNNNNGG 1 cut(s) 442
BsmAI GTCTC 4 cut(s) 67, 159, 293, 658
BsmFI GGGAC 1 cut(s) 435
BsnI GGCC 5 cut(s) 117, 186, 253, 515, 626
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 362, 826
Bsp143I GATC 3 cut(s) 430, 486, 957
Bsp68I TCGCGA 1 cut(s) 472
BspACI CCGC 4 cut(s) 352, 516, 710, 890
BspANI GGCC 5 cut(s) 117, 186, 253, 515, 626
BspCNI CTCAG 5 cut(s) 77, 421, 514, 784, 838
BspFNI CGCG 1 cut(s) 472
BspMAI CTGCAG 1 cut(s) 547
BspPI GGATC 1 cut(s) 438
BspT104I TTCGAA 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 792
BsrI ACTGG 2 cut(s) 214, 436
BssECI CCNNGG 3 cut(s) 769, 840, 917
BssMI GATC 3 cut(s) 430, 486, 957
BssT1I CCWWGG 3 cut(s) 769, 840, 917
Bst2UI CCWGG 2 cut(s) 504, 689
Bst4CI ACNGT 2 cut(s) 568, 969
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 3 cut(s) 188, 229, 330
BstDEI CTNAG 5 cut(s) 64, 408, 522, 792, 825
BstF5I GGATG 2 cut(s) 697, 779
BstFNI CGCG 1 cut(s) 472
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 3 cut(s) 433, 489, 960
BstMAI GTCTC 4 cut(s) 67, 159, 293, 658
BstMBI GATC 3 cut(s) 430, 486, 957
BstMWI GCNNNNNNNGC 5 cut(s) 524, 527, 533, 539, 542
BstNI CCWGG 2 cut(s) 504, 689
BstNSI RCATGY 1 cut(s) 27
BstSCI CCNGG 4 cut(s) 125, 502, 687, 949
BstSFI CTRYAG 1 cut(s) 543
BstSLI GKGCMC 1 cut(s) 362
BstUI CGCG 1 cut(s) 472
BstV1I GCAGC 8 cut(s) 316, 514, 517, 520, 529, 530, 557, 694
BstV2I GAAGAC 1 cut(s) 462
BsuI GTATCC 1 cut(s) 209
BsuRI GGCC 5 cut(s) 117, 186, 253, 515, 626
BtgZI GCGATG 1 cut(s) 453
BtsCI GGATG 2 cut(s) 697, 779
BtsI GCAGTG 2 cut(s) 514, 915
BtsIMutI CAGTG 3 cut(s) 443, 514, 915
BtuMI TCGCGA 1 cut(s) 472
Cac8I GCNNGC 3 cut(s) 188, 229, 330
CfoI GCGC 1 cut(s) 88
CseI GACGC 1 cut(s) 437
Csp6I GTAC 2 cut(s) 298, 877
CspCI CAANNNNNGTGG 2 cut(s) 712, 747
CviAII CATG 5 cut(s) 8, 24, 460, 851, 887
CviQI GTAC 2 cut(s) 298, 877
DdeI CTNAG 5 cut(s) 64, 408, 522, 792, 825
DpnI GATC 3 cut(s) 432, 488, 959
DpnII GATC 3 cut(s) 430, 486, 957
EaeI YGGCCR 3 cut(s) 184, 251, 624
Ecl136II GAGCTC 1 cut(s) 824
Eco130I CCWWGG 3 cut(s) 769, 840, 917
Eco24I GRGCYC 1 cut(s) 826
Eco32I GATATC 1 cut(s) 312
Eco53kI GAGCTC 1 cut(s) 824
Eco57I CTGAAG 1 cut(s) 300
EcoICRI GAGCTC 1 cut(s) 824
EcoRII CCWGG 2 cut(s) 502, 687
EcoRV GATATC 1 cut(s) 312
EcoT14I CCWWGG 3 cut(s) 769, 840, 917
EcoT38I GRGCYC 1 cut(s) 826
ErhI CCWWGG 3 cut(s) 769, 840, 917
FaeI CATG 5 cut(s) 11, 27, 463, 854, 890
FalI AAGNNNNNCTT 4 cut(s) 72, 104, 369, 401
FaqI GGGAC 1 cut(s) 435
FatI CATG 5 cut(s) 7, 23, 459, 850, 886
FbaI TGATCA 1 cut(s) 957
FokI GGATG 2 cut(s) 704, 786
FriOI GRGCYC 1 cut(s) 826
FspBI CTAG 1 cut(s) 836
GlaI GCGC 1 cut(s) 87
GsaI CCCAGC 3 cut(s) 148, 358, 445
GsuI CTGGAG 2 cut(s) 231, 486
HaeIII GGCC 5 cut(s) 117, 186, 253, 515, 626
HapII CCGG 2 cut(s) 126, 951
HgaI GACGC 1 cut(s) 437
HhaI GCGC 1 cut(s) 88
Hin1II CATG 5 cut(s) 11, 27, 463, 854, 890
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HinfI GANTC 5 cut(s) 167, 286, 572, 778, 893
HpaII CCGG 2 cut(s) 126, 951
HphI GGTGA 2 cut(s) 374, 425
Hpy166II GTNNAC 2 cut(s) 571, 763
Hpy188I TCNGA 3 cut(s) 181, 793, 828
Hpy188III TCNNGA 3 cut(s) 340, 452, 471
Hpy8I GTNNAC 2 cut(s) 571, 763
HpyAV CCTTC 3 cut(s) 107, 188, 409
HpyCH4III ACNGT 2 cut(s) 568, 969
HpyCH4IV ACGT 2 cut(s) 237, 336
HpyCH4V TGCA 6 cut(s) 23, 173, 227, 332, 545, 908
HpyF10VI GCNNNNNNNGC 5 cut(s) 524, 527, 533, 539, 542
HpyF3I CTNAG 5 cut(s) 64, 408, 522, 792, 825
HpySE526I ACGT 2 cut(s) 237, 336
Hsp92II CATG 5 cut(s) 11, 27, 463, 854, 890
HspAI GCGC 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 957
Kzo9I GATC 3 cut(s) 430, 486, 957
LmnI GCTCC 4 cut(s) 128, 445, 677, 821
Lsp1109I GCAGC 8 cut(s) 316, 514, 517, 520, 529, 530, 557, 694
LweI GCATC 3 cut(s) 73, 214, 903
MaeI CTAG 1 cut(s) 836
MaeII ACGT 2 cut(s) 237, 336
MalI GATC 3 cut(s) 432, 488, 959
MboI GATC 3 cut(s) 430, 486, 957
MboII GAAGA 4 cut(s) 92, 100, 306, 467
MfeI CAATTG 1 cut(s) 552
MhlI GDGCHC 2 cut(s) 362, 826
MlsI TGGCCA 2 cut(s) 186, 253
MluCI AATT 3 cut(s) 202, 552, 812
MluNI TGGCCA 2 cut(s) 186, 253
MlyI GAGTC 5 cut(s) 161, 295, 566, 787, 902
MmeI TCCRAC 2 cut(s) 263, 799
MnlI CCTC 7 cut(s) 155, 206, 505, 517, 548, 559, 632
Mox20I TGGCCA 2 cut(s) 186, 253
MscI TGGCCA 2 cut(s) 186, 253
MseI TTAA 2 cut(s) 561, 973
MslI CAYNNNNRTG 1 cut(s) 901
Msp20I TGGCCA 2 cut(s) 186, 253
MspA1I CMGCKG 2 cut(s) 354, 521
MspI CCGG 2 cut(s) 126, 951
MspR9I CCNGG 4 cut(s) 127, 504, 689, 951
MunI CAATTG 1 cut(s) 552
MvaI CCWGG 2 cut(s) 504, 689
MvnI CGCG 1 cut(s) 472
MwoI GCNNNNNNNGC 5 cut(s) 524, 527, 533, 539, 542
NciI CCSGG 2 cut(s) 127, 951
NdeII GATC 3 cut(s) 430, 486, 957
NlaIII CATG 5 cut(s) 11, 27, 463, 854, 890
NruI TCGCGA 1 cut(s) 472
NspI RCATGY 1 cut(s) 27
NspV TTCGAA 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PfoI TCCNGGA 1 cut(s) 125
PleI GAGTC 5 cut(s) 161, 294, 566, 786, 901
PpsI GAGTC 5 cut(s) 161, 294, 566, 786, 901
Psp124BI GAGCTC 1 cut(s) 826
Psp6I CCWGG 2 cut(s) 502, 687
PspFI CCCAGC 3 cut(s) 144, 354, 441
PspGI CCWGG 2 cut(s) 502, 687
PstI CTGCAG 1 cut(s) 547
PvuII CAGCTG 1 cut(s) 521
RruI TCGCGA 1 cut(s) 472
RsaI GTAC 2 cut(s) 299, 878
RsaNI GTAC 2 cut(s) 298, 877
RseI CAYNNNNRTG 1 cut(s) 901
SacI GAGCTC 1 cut(s) 826
SaqAI TTAA 2 cut(s) 561, 973
Sau3AI GATC 3 cut(s) 430, 486, 957
SchI GAGTC 5 cut(s) 161, 295, 566, 787, 902
ScrFI CCNGG 4 cut(s) 127, 504, 689, 951
SduI GDGCHC 2 cut(s) 362, 826
SfaNI GCATC 3 cut(s) 73, 214, 903
SfcI CTRYAG 1 cut(s) 543
SfuI TTCGAA 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 901
SmlI CTYRAG 2 cut(s) 595, 872
SmoI CTYRAG 2 cut(s) 595, 872
Sse9I AATT 3 cut(s) 202, 552, 812
SsiI CCGC 4 cut(s) 352, 516, 710, 890
SspMI CTAG 1 cut(s) 836
SstI GAGCTC 1 cut(s) 826
StyD4I CCNGG 4 cut(s) 125, 502, 687, 949
StyI CCWWGG 3 cut(s) 769, 840, 917
TaaI ACNGT 2 cut(s) 568, 969
TaiI ACGT 2 cut(s) 240, 339
TaqI TCGA 2 cut(s) 111, 494
TasI AATT 3 cut(s) 202, 552, 812
TatI WGTACW 1 cut(s) 876
TauI GCSGC 2 cut(s) 518, 713
Tru1I TTAA 2 cut(s) 561, 973
Tru9I TTAA 2 cut(s) 561, 973
TscAI CASTG 3 cut(s) 443, 514, 915
TseI GCWGC 8 cut(s) 304, 518, 527, 530, 533, 542, 545, 707
TspDTI ATGAA 2 cut(s) 93, 358
TspRI CASTG 3 cut(s) 443, 514, 915
XapI RAATTY 2 cut(s) 202, 812
XceI RCATGY 1 cut(s) 27
XspI CTAG 1 cut(s) 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.