Rmu_sc0013350.1_g000007

cellulase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013350.1
OG0010905
Physical Location & Seq
Forward (+)
14653 .. 16995
2343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013350.1_g000007.1.cds

Sequence Viewer

Length: 1359 bp
atggggcatggtggagttgttgcttgtgttttggtattgtggtgttttttgaatgagatagtctcagccattgactatgaagatgcgcttggcaaatctatattgttcttcgaaggccaacgctccgggaagttgccgaccatccagcgagtatcttggagaggagactctgcactttccgatggccagcttgaaggagtaaatttgactggaggatactatgatgcaggcgacaacgtgaagttcgtgtggccaatggcatatagtgtgaccttgttgagttggagtctcattgagtaccagcagcagatatcttcagcaaaccagcttgcatacgtccagagagcaatccgctggggcacagacttcataataaaagctcacctttcgcccaccaccttctatactcaggtaggagatggaaatgtggatcaccagtgctgggagcgtcccgaagacatggactcatcacgaaagctctacaagatcacttcgagttctccaggcagtgaggccgcagctgaggctgctgctgccctcgctgcagcctcaattgtctttaagacagttgactccacctattcggcaaagctctcaagtcattcccaatctgatgagctgttatgggctgcggcttggctatacaaggcaagtggaaacagaagctattttagttatgtggtaaacaaccaaggatggagtcaagcaatgtctgagtttagttgggataacaaatttgttggagctcagactttactagccaaggaataccatgctggaaatactgatttgctcaagtacaagaccaatgcggagtcatttatatgtgcagtgatgccagggagtagctctacacaagttcaaagaacacccggtggacttctgtttattagagacagtagtaacttgcagtatgttacaagctctaccttggtgctattcatctactcaaaaaccataagtagtacacaaactggtggagttcaatgcggctccacgtttttctctgctgcgaaaatcaaagcctttgctaaagctcaggtggactacatccttggagccaaccccaagcagatgtcatacatggtgggttttggtaccacatacccaacaaaattgcaccatagaggttcatcgatcccttcaatcaagaccctccacaccaaggtggactgcaatggtggctatacctattacaattcagggagtccaaatccaaatactcatgtgggtgcaattgttgggggtcctgatgtgaatgaccagttccagaatgcaagatcagactattctcattctgaacctacaacttatatcaatgcagcttttgtgggatcagcagctgctttacttgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

452

Amino Acids

49.12

Weight (kDa)

6.55

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010905)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09740 AT4G23560
fragaria_vesca FvH4_5g03220
malus_domestica MD06G1091600.v1.1
prunus_persica Prupe.5G106800_v2.0.a1 Prupe.5G106800_v2.0.a1
pyrus_communis pycom06g08750
rosa_chinensis RchiOBHm_Chr7g0196541
rosa_laevigata RLG00000004006
rosa_multiflora Rmu_sc0013350.1_g000007
rosa_roxburghii Rroxscaffold_3G00259210
rosa_rugosa Rorug07G0034400 Rorug07G0034500 Rorug07G0034600
rosa_samantha Rh1BG041400 Rh7AG158700 Rh7BG160700 Rh7CG167100 Rh7DG159900
rosa_wichuraiana Rw7G013870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1097
AccB1I GGYRCC 1 cut(s) 1097
AciI CCGC 5 cut(s) 352, 516, 632, 812, 990
AclWI GGATC 3 cut(s) 438, 1132, 1342
AcoI YGGCCR 2 cut(s) 184, 251
AcsI RAATTY 2 cut(s) 202, 734
AcuI CTGAAG 1 cut(s) 300
AdeI CACNNNGTG 1 cut(s) 875
AfaI GTAC 4 cut(s) 299, 800, 967, 1099
AfiI CCNNNNNNNGG 2 cut(s) 442, 1165
AgsI TTSAA 5 cut(s) 52, 194, 863, 986, 1146
AjnI CCWGG 2 cut(s) 502, 838
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AleI CACNNNNGTG 1 cut(s) 1166
Alw21I GWGCWC 1 cut(s) 748
Alw26I GTCTC 4 cut(s) 67, 159, 293, 888
AlwI GGATC 3 cut(s) 438, 1132, 1342
AlwNI CAGNNNCTG 1 cut(s) 1343
AoxI GGCC 4 cut(s) 115, 184, 251, 513
ApoI RAATTY 2 cut(s) 202, 734
Asp718I GGTACC 1 cut(s) 1097
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 1247
AsuC2I CCSGG 2 cut(s) 127, 873
AsuHPI GGTGA 2 cut(s) 374, 425
AsuII TTCGAA 1 cut(s) 111
AvaII GGWCC 1 cut(s) 1247
BaeGI GKGCMC 1 cut(s) 362
BalI TGGCCA 2 cut(s) 186, 253
BanI GGYRCC 1 cut(s) 1097
BanII GRGCYC 1 cut(s) 748
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 748
BbvCI CCTCAGC 1 cut(s) 522
BccI CCATC 4 cut(s) 149, 176, 413, 690
BciT130I CCWGG 2 cut(s) 504, 840
BciVI GTATCC 1 cut(s) 209
BcnI CCSGG 2 cut(s) 127, 873
BcoDI GTCTC 4 cut(s) 67, 159, 293, 888
BfaI CTAG 1 cut(s) 758
BfmI CTRYAG 1 cut(s) 543
BfuI GTATCC 1 cut(s) 209
Bme1390I CCNGG 4 cut(s) 127, 504, 840, 873
Bme18I GGWCC 1 cut(s) 1247
BmgT120I GGNCC 1 cut(s) 1247
BmiI GGNNCC 4 cut(s) 994, 1060, 1099, 1248
BmrFI CCNGG 4 cut(s) 127, 504, 840, 873
BmsI GCATC 3 cut(s) 73, 214, 825
BpiI GAAGAC 1 cut(s) 462
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpmI CTGGAG 2 cut(s) 231, 486
Bpu10I CCTNAGC 2 cut(s) 522, 1038
Bpu14I TTCGAA 1 cut(s) 111
BpuEI CTTGAG 2 cut(s) 580, 779
BpuMI CCSGG 2 cut(s) 127, 873
Bsa29I ATCGAT 1 cut(s) 1136
BsaJI CCNNGG 6 cut(s) 691, 762, 839, 930, 1054, 1164
Bsc4I CCNNNNNNNGG 2 cut(s) 442, 1165
Bse1I ACTGG 4 cut(s) 214, 436, 979, 1264
Bse3DI GCAATG 2 cut(s) 714, 1183
BseBI CCWGG 2 cut(s) 504, 840
BseCI ATCGAT 1 cut(s) 1136
BseDI CCNNGG 6 cut(s) 691, 762, 839, 930, 1054, 1164
BseGI GGATG 3 cut(s) 141, 701, 1050
BseLI CCNNNNNNNGG 2 cut(s) 442, 1165
BseMI GCAATG 2 cut(s) 714, 1183
BseMII CTCAG 6 cut(s) 78, 422, 513, 705, 761, 1052
BseNI ACTGG 4 cut(s) 214, 436, 979, 1264
BseRI GAGGAG 1 cut(s) 177
BseSI GKGCMC 1 cut(s) 362
BseYI CCCAGC 2 cut(s) 354, 441
BsgI GTGCAG 2 cut(s) 156, 849
BshFI GGCC 4 cut(s) 117, 186, 253, 515
BshNI GGYRCC 1 cut(s) 1097
BshVI ATCGAT 1 cut(s) 1136
BsiHKAI GWGCWC 1 cut(s) 748
BsiSI CCGG 2 cut(s) 126, 873
BslFI GGGAC 1 cut(s) 435
BslI CCNNNNNNNGG 2 cut(s) 442, 1165
BsmAI GTCTC 4 cut(s) 67, 159, 293, 888
BsmFI GGGAC 1 cut(s) 435
BsmI GAATGC 1 cut(s) 1279
BsnI GGCC 4 cut(s) 117, 186, 253, 515
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 362, 748
Bsp143I GATC 5 cut(s) 430, 486, 1137, 1280, 1334
BspACI CCGC 5 cut(s) 352, 516, 632, 812, 990
BspANI GGCC 4 cut(s) 117, 186, 253, 515
BspCNI CTCAG 6 cut(s) 77, 421, 514, 706, 760, 1051
BspDI ATCGAT 1 cut(s) 1136
BspLI GGNNCC 4 cut(s) 994, 1060, 1099, 1248
BspMAI CTGCAG 1 cut(s) 547
BspPI GGATC 3 cut(s) 438, 1132, 1342
BspT104I TTCGAA 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 1097
BsrDI GCAATG 2 cut(s) 714, 1183
BsrI ACTGG 4 cut(s) 214, 436, 979, 1264
BssECI CCNNGG 6 cut(s) 691, 762, 839, 930, 1054, 1164
BssMI GATC 5 cut(s) 430, 486, 1137, 1280, 1334
BssT1I CCWWGG 5 cut(s) 691, 762, 930, 1054, 1164
Bst2UI CCWGG 2 cut(s) 504, 840
Bst4CI ACNGT 2 cut(s) 568, 899
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 3 cut(s) 188, 229, 330
BstDEI CTNAG 6 cut(s) 64, 408, 522, 714, 747, 1038
BstF5I GGATG 3 cut(s) 141, 701, 1050
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 5 cut(s) 433, 489, 1140, 1283, 1337
BstMAI GTCTC 4 cut(s) 67, 159, 293, 888
BstMBI GATC 5 cut(s) 430, 486, 1137, 1280, 1334
BstMWI GCNNNNNNNGC 7 cut(s) 524, 527, 533, 539, 542, 1182, 1352
BstNI CCWGG 2 cut(s) 504, 840
BstSCI CCNGG 4 cut(s) 125, 502, 838, 871
BstSFI CTRYAG 1 cut(s) 543
BstSLI GKGCMC 1 cut(s) 362
BstV2I GAAGAC 1 cut(s) 462
Bsu15I ATCGAT 1 cut(s) 1136
BsuI GTATCC 1 cut(s) 209
BsuRI GGCC 4 cut(s) 117, 186, 253, 515
BsuTUI ATCGAT 1 cut(s) 1136
BtsCI GGATG 3 cut(s) 141, 701, 1050
BtsI GCAGTG 2 cut(s) 514, 837
BtsIMutI CAGTG 3 cut(s) 443, 514, 837
Cac8I GCNNGC 3 cut(s) 188, 229, 330
CaiI CAGNNNCTG 1 cut(s) 1343
CfoI GCGC 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 1247
ClaI ATCGAT 1 cut(s) 1136
CseI GACGC 1 cut(s) 437
Csp6I GTAC 4 cut(s) 298, 799, 966, 1098
CspCI CAANNNNNGTGG 2 cut(s) 634, 669
CviAII CATG 5 cut(s) 8, 460, 773, 1084, 1226
CviQI GTAC 4 cut(s) 298, 799, 966, 1098
DdeI CTNAG 6 cut(s) 64, 408, 522, 714, 747, 1038
DpnI GATC 5 cut(s) 432, 488, 1139, 1282, 1336
DpnII GATC 5 cut(s) 430, 486, 1137, 1280, 1334
DraIII CACNNNGTG 1 cut(s) 875
EaeI YGGCCR 2 cut(s) 184, 251
Ecl136II GAGCTC 1 cut(s) 746
Eco130I CCWWGG 5 cut(s) 691, 762, 930, 1054, 1164
Eco24I GRGCYC 1 cut(s) 748
Eco32I GATATC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 1247
Eco53kI GAGCTC 1 cut(s) 746
Eco57I CTGAAG 1 cut(s) 300
EcoICRI GAGCTC 1 cut(s) 746
EcoO109I RGGNCCY 1 cut(s) 1247
EcoRII CCWGG 2 cut(s) 502, 838
EcoRV GATATC 1 cut(s) 312
EcoT14I CCWWGG 5 cut(s) 691, 762, 930, 1054, 1164
EcoT38I GRGCYC 1 cut(s) 748
ErhI CCWWGG 5 cut(s) 691, 762, 930, 1054, 1164
FaeI CATG 5 cut(s) 11, 463, 776, 1087, 1229
FalI AAGNNNNNCTT 4 cut(s) 72, 104, 369, 401
FaqI GGGAC 1 cut(s) 435
FatI CATG 5 cut(s) 7, 459, 772, 1083, 1225
FokI GGATG 3 cut(s) 128, 708, 1037
FriOI GRGCYC 1 cut(s) 748
FspBI CTAG 1 cut(s) 758
GlaI GCGC 1 cut(s) 87
GsaI CCCAGC 2 cut(s) 358, 445
GsuI CTGGAG 2 cut(s) 231, 486
HaeIII GGCC 4 cut(s) 117, 186, 253, 515
HapII CCGG 2 cut(s) 126, 873
HgaI GACGC 1 cut(s) 437
HhaI GCGC 1 cut(s) 88
Hin1II CATG 5 cut(s) 11, 463, 776, 1087, 1229
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HinfI GANTC 7 cut(s) 167, 286, 464, 572, 700, 815, 1207
HpaII CCGG 2 cut(s) 126, 873
HphI GGTGA 2 cut(s) 374, 425
Hpy166II GTNNAC 6 cut(s) 571, 685, 878, 968, 1045, 1171
Hpy188I TCNGA 6 cut(s) 181, 613, 715, 750, 1285, 1300
Hpy188III TCNNGA 6 cut(s) 340, 452, 471, 1150, 1250, 1270
Hpy8I GTNNAC 6 cut(s) 571, 685, 878, 968, 1045, 1171
HpyAV CCTTC 4 cut(s) 107, 188, 409, 1152
HpyCH4III ACNGT 2 cut(s) 568, 899
HpyCH4IV ACGT 3 cut(s) 237, 336, 998
HpyF10VI GCNNNNNNNGC 7 cut(s) 524, 527, 533, 539, 542, 1182, 1352
HpyF3I CTNAG 6 cut(s) 64, 408, 522, 714, 747, 1038
HpySE526I ACGT 3 cut(s) 237, 336, 998
Hsp92II CATG 5 cut(s) 11, 463, 776, 1087, 1229
HspAI GCGC 1 cut(s) 86
KpnI GGTACC 1 cut(s) 1101
Kzo9I GATC 5 cut(s) 430, 486, 1137, 1280, 1334
LmnI GCTCC 5 cut(s) 128, 445, 743, 998, 1058
LweI GCATC 3 cut(s) 73, 214, 825
MaeI CTAG 1 cut(s) 758
MaeII ACGT 3 cut(s) 237, 336, 998
MaeIII GTNAC 3 cut(s) 268, 902, 916
MalI GATC 5 cut(s) 432, 488, 1139, 1282, 1336
MboI GATC 5 cut(s) 430, 486, 1137, 1280, 1334
MboII GAAGA 4 cut(s) 92, 100, 306, 467
MfeI CAATTG 2 cut(s) 552, 1236
MhlI GDGCHC 2 cut(s) 362, 748
MlsI TGGCCA 2 cut(s) 186, 253
MluCI AATT 6 cut(s) 202, 552, 734, 1115, 1198, 1236
MluNI TGGCCA 2 cut(s) 186, 253
MlyI GAGTC 7 cut(s) 161, 295, 458, 566, 709, 824, 1216
MmeI TCCRAC 2 cut(s) 263, 721
MnlI CCTC 8 cut(s) 155, 206, 505, 517, 548, 559, 1121, 1166
Mox20I TGGCCA 2 cut(s) 186, 253
MscI TGGCCA 2 cut(s) 186, 253
MseI TTAA 2 cut(s) 561, 1357
MslI CAYNNNNRTG 3 cut(s) 823, 1166, 1230
Msp20I TGGCCA 2 cut(s) 186, 253
MspA1I CMGCKG 3 cut(s) 354, 521, 1343
MspI CCGG 2 cut(s) 126, 873
MspR9I CCNGG 4 cut(s) 127, 504, 840, 873
MunI CAATTG 2 cut(s) 552, 1236
Mva1269I GAATGC 1 cut(s) 1279
MvaI CCWGG 2 cut(s) 504, 840
MwoI GCNNNNNNNGC 7 cut(s) 524, 527, 533, 539, 542, 1182, 1352
NciI CCSGG 2 cut(s) 127, 873
NdeII GATC 5 cut(s) 430, 486, 1137, 1280, 1334
NlaIII CATG 5 cut(s) 11, 463, 776, 1087, 1229
NlaIV GGNNCC 4 cut(s) 994, 1060, 1099, 1248
NmuCI GTSAC 1 cut(s) 268
NspV TTCGAA 1 cut(s) 111
OliI CACNNNNGTG 1 cut(s) 1166
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PctI GAATGC 1 cut(s) 1279
PfoI TCCNGGA 1 cut(s) 125
PleI GAGTC 7 cut(s) 161, 294, 458, 566, 708, 823, 1215
PpsI GAGTC 7 cut(s) 161, 294, 458, 566, 708, 823, 1215
PpuMI RGGWCCY 1 cut(s) 1247
Psp124BI GAGCTC 1 cut(s) 748
Psp5II RGGWCCY 1 cut(s) 1247
Psp6I CCWGG 2 cut(s) 502, 838
PspFI CCCAGC 2 cut(s) 354, 441
PspGI CCWGG 2 cut(s) 502, 838
PspN4I GGNNCC 4 cut(s) 994, 1060, 1099, 1248
PspPI GGNCC 1 cut(s) 1247
PspPPI RGGWCCY 1 cut(s) 1247
PstI CTGCAG 1 cut(s) 547
PstNI CAGNNNCTG 1 cut(s) 1343
PvuII CAGCTG 2 cut(s) 521, 1343
RsaI GTAC 4 cut(s) 299, 800, 967, 1099
RsaNI GTAC 4 cut(s) 298, 799, 966, 1098
RseI CAYNNNNRTG 3 cut(s) 823, 1166, 1230
SacI GAGCTC 1 cut(s) 748
SaqAI TTAA 2 cut(s) 561, 1357
Sau3AI GATC 5 cut(s) 430, 486, 1137, 1280, 1334
Sau96I GGNCC 1 cut(s) 1247
SchI GAGTC 7 cut(s) 161, 295, 458, 566, 709, 824, 1216
ScrFI CCNGG 4 cut(s) 127, 504, 840, 873
SduI GDGCHC 2 cut(s) 362, 748
SfaNI GCATC 3 cut(s) 73, 214, 825
SfcI CTRYAG 1 cut(s) 543
SfuI TTCGAA 1 cut(s) 111
SinI GGWCC 1 cut(s) 1247
SmiMI CAYNNNNRTG 3 cut(s) 823, 1166, 1230
SmlI CTYRAG 2 cut(s) 595, 794
SmoI CTYRAG 2 cut(s) 595, 794
Sse9I AATT 6 cut(s) 202, 552, 734, 1115, 1198, 1236
SsiI CCGC 5 cut(s) 352, 516, 632, 812, 990
SspMI CTAG 1 cut(s) 758
SstI GAGCTC 1 cut(s) 748
StyD4I CCNGG 4 cut(s) 125, 502, 838, 871
StyI CCWWGG 5 cut(s) 691, 762, 930, 1054, 1164
TaaI ACNGT 2 cut(s) 568, 899
TaiI ACGT 3 cut(s) 240, 339, 1001
TaqI TCGA 3 cut(s) 111, 494, 1136
TasI AATT 6 cut(s) 202, 552, 734, 1115, 1198, 1236
TatI WGTACW 2 cut(s) 798, 965
TauI GCSGC 3 cut(s) 518, 635, 993
Tru1I TTAA 2 cut(s) 561, 1357
Tru9I TTAA 2 cut(s) 561, 1357
TscAI CASTG 3 cut(s) 443, 514, 837
TseFI GTSAC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 4 cut(s) 93, 358, 931, 1122
TspRI CASTG 3 cut(s) 443, 514, 837
VpaK11BI GGWCC 1 cut(s) 1247
XapI RAATTY 2 cut(s) 202, 734
XspI CTAG 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.