Rh1BG041400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
5444481 .. 5451705
7225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG041400.1

Sequence Viewer

Length: 180 bp
ATGAGTTCAATCAAGGCCTCAGACTCTGAGTCTATCGCTGGAAAATCATATGCAAAGAGTAATTTGCTCAAGTACAAAATCAATATGGAGTCATTTACATGTGTAGTAATCCGAGGCACTAGCCCTACACAAAGTCAAAGAACATCCAGGTCCGTCAGCCTTAGCTTAAATGACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.42

Weight (kDa)

9.65

Isoelectric Point (pI)

55.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0010905)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 98
AgsI TTSAA 1 cut(s) 9
AhdI GACNNNNNGTC 1 cut(s) 28
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
AlwNI CAGNNNCTG 1 cut(s) 26
AoxI GGCC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 150
AvaII GGWCC 1 cut(s) 150
BciT130I CCWGG 1 cut(s) 148
BfaI CTAG 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 1 cut(s) 150
BmeRI GACNNNNNGTC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 148
Bpu10I CCTNAGC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 1 cut(s) 143
BseMII CTCAG 2 cut(s) 18, 33
BshFI GGCC 1 cut(s) 17
BsnI GGCC 1 cut(s) 17
BspANI GGCC 1 cut(s) 17
BspCNI CTCAG 2 cut(s) 19, 32
BssECI CCNNGG 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 148
BstDEI CTNAG 3 cut(s) 19, 27, 161
BstF5I GGATG 1 cut(s) 143
BstNI CCWGG 1 cut(s) 148
BstNSI RCATGY 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 146
BsuRI GGCC 1 cut(s) 17
BtsCI GGATG 1 cut(s) 143
CaiI CAGNNNCTG 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 73
CviAII CATG 1 cut(s) 99
CviJI RGCY 4 cut(s) 17, 123, 159, 165
CviKI_1 RGCY 4 cut(s) 17, 123, 159, 165
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 3 cut(s) 19, 27, 161
DriI GACNNNNNGTC 1 cut(s) 28
Eam1105I GACNNNNNGTC 1 cut(s) 28
Eco147I AGGCCT 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 146
FaeI CATG 1 cut(s) 102
FaiI YATR 4 cut(s) 49, 51, 86, 100
FatI CATG 1 cut(s) 98
FauNDI CATATG 1 cut(s) 49
FokI GGATG 1 cut(s) 130
FspBI CTAG 1 cut(s) 120
HaeIII GGCC 1 cut(s) 17
Hin1II CATG 1 cut(s) 102
HinfI GANTC 3 cut(s) 23, 29, 89
Hpy188I TCNGA 3 cut(s) 22, 28, 113
HpyCH4V TGCA 1 cut(s) 53
HpyF3I CTNAG 3 cut(s) 19, 27, 161
Hsp92II CATG 1 cut(s) 102
LpnPI CCDG 3 cut(s) 24, 133, 160
MaeI CTAG 1 cut(s) 120
MluCI AATT 1 cut(s) 61
MlyI GAGTC 3 cut(s) 17, 38, 98
MnlI CCTC 2 cut(s) 28, 107
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 97
MspR9I CCNGG 1 cut(s) 148
MvaI CCWGG 1 cut(s) 148
NdeI CATATG 1 cut(s) 49
NlaIII CATG 1 cut(s) 102
NspI RCATGY 1 cut(s) 102
PceI AGGCCT 1 cut(s) 17
PciI ACATGT 1 cut(s) 98
PleI GAGTC 3 cut(s) 17, 37, 97
PpsI GAGTC 3 cut(s) 17, 37, 97
PscI ACATGT 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspPI GGNCC 1 cut(s) 150
PstNI CAGNNNCTG 1 cut(s) 26
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 97
SaqAI TTAA 1 cut(s) 167
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 3 cut(s) 17, 38, 98
ScrFI CCNGG 1 cut(s) 148
SetI ASST 2 cut(s) 152, 167
SgeI CNNG 8 cut(s) 25, 51, 82, 111, 125, 132, 159, 160
SinI GGWCC 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 1 cut(s) 61
SseBI AGGCCT 1 cut(s) 17
SspMI CTAG 1 cut(s) 120
StuI AGGCCT 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 146
TasI AATT 1 cut(s) 61
TatI WGTACW 1 cut(s) 72
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TspGWI ACGGA 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 150
XceI RCATGY 1 cut(s) 102
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.