Rorug07G0034500

cellulase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0010905
Physical Location & Seq
Reverse (-)
2447865 .. 2449354
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0034500.1

Sequence Viewer

Length: 1167 bp
ATGTCATTGCTCGAAGTGATCACCAAGGCTTCGGCCGAGTCCCAATCGCTTGGTTCTCCATCAGAATACCCTATTGTTCTTGACCCAGATTCCATTTTCGCCAATTTGAAACCCAAACTCGATGACCCAAATCCCATCTCTGCTGCTATTCCTCTTTGTGGTTGGCAGATTTCACAGACCGATTCAGAGCTCATTGAGTTGGGTAAGAAGTTCAGTGCCAAGCTTAAGAAGAAGCTCAAAAACCCAGTTAAGTTCGATAAGGCTGAGTTCTTGGGAATGGTGAATCAATTTCTTGAGAAGATTAGGGAAAAGGTTGGGGTTGATTCTAGTAATGATGGGTATACAAGGGTTTTGATTGAGAAGGTTGGGGAGTACATGGGGAAGGATGTTGCTGGTTTGGTTTTGGATGCTTGTGTTGTGTTGGAGGTTTGGGAATTAGTAGGGGCTTTGATTGCAAATGGGCTTGTTTCGAATTCTTGTTATGAGGATTTGGTTGCGAAAATCGTGGCAAAGAGGAGGACAGAGTTGCTTTGTATGTGTGTTAGGTATGCTTCCGATCTTGGATCGTCGGAGTTGGTGATGATCTTCAAGTATTTTCTTAGTCCAAGTAAAGTTGCTTATGCTAGCATTGTGGAGGTGAGGAAGGAATGGGAGAGCCAAGCCTTGTTAGCCGCAGAGAAGGCCAGTGATAAGAGTCTGTCGGGGAAGAAACTAAGCATGGCAAAAGAGGCTGCAGTGTTGCTTATGGTGGCATATGATGGCTTCTCTTCCGCGGAACTCTGTCTGCATTATTTGTTGGTGTCAAAGAATGTTGATGAGGTGATACTGTCGTCTGCGATTAGTAAGTTGAATGGGAAAGAGATGGTGAGTTTGCTTCGGTATTTGGGTAAGTGGCTGAAGAAGTACGAGAGGTTTCCTCAGGCAGGTCCCTGCCACAAGGCATCAACAACATTGGGTTTGAAGGCTTGTGATTGGGTTCCTAAACTTGAAGATGTTCTGAAATGCACTGGGGTAGTGCTGGATGAGAATTACTCTGCATTGGTGTTGCATCCAGAGTTTCACGAAGAGTTGAGGTCTATAAACAAAGTCGTTGGTTCCTTGACCTTGGAAGCAAGGCTCTGCTGCTCTGTGGCCAATGTAGCTGATAAGTTGAAAGCTGAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

388

Amino Acids

42.63

Weight (kDa)

6.49

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010905)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09740 AT4G23560
fragaria_vesca FvH4_5g03220
malus_domestica MD06G1091600.v1.1
prunus_persica Prupe.5G106800_v2.0.a1 Prupe.5G106800_v2.0.a1
pyrus_communis pycom06g08750
rosa_chinensis RchiOBHm_Chr7g0196541
rosa_laevigata RLG00000004006
rosa_multiflora Rmu_sc0013350.1_g000007
rosa_roxburghii Rroxscaffold_3G00259210
rosa_rugosa Rorug07G0034400 Rorug07G0034500 Rorug07G0034600
rosa_samantha Rh1BG041400 Rh7AG158700 Rh7BG160700 Rh7CG167100 Rh7DG159900
rosa_wichuraiana Rw7G013870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 914
AccI GTMKAC 1 cut(s) 341
AccII CGCG 1 cut(s) 773
AciI CCGC 3 cut(s) 672, 771, 773
AclWI GGATC 1 cut(s) 571
AcoI YGGCCR 2 cut(s) 33, 1131
AcsI RAATTY 1 cut(s) 472
AcuI CTGAAG 1 cut(s) 917
AfaI GTAC 2 cut(s) 374, 905
AfiI CCNNNNNNNGG 2 cut(s) 158, 923
AflII CTTAAG 1 cut(s) 224
AgsI TTSAA 6 cut(s) 109, 589, 850, 961, 989, 1153
AluBI AGCT 5 cut(s) 190, 223, 235, 1142, 1157
AluI AGCT 5 cut(s) 190, 223, 235, 1142, 1157
Alw21I GWGCWC 1 cut(s) 192
AlwI GGATC 1 cut(s) 571
AoxI GGCC 3 cut(s) 33, 681, 1131
ApeKI GCWGC 3 cut(s) 143, 731, 1122
ApoI RAATTY 1 cut(s) 472
Asp700I GAANNNNTTC 1 cut(s) 993
AspS9I GGNCC 1 cut(s) 926
AsuHPI GGTGA 6 cut(s) 13, 292, 589, 649, 832, 877
AsuII TTCGAA 1 cut(s) 470
AsuNHI GCTAGC 1 cut(s) 623
AvaII GGWCC 1 cut(s) 926
AxyI CCTNAGG 1 cut(s) 918
BaeI ACNNNNGTAYC 2 cut(s) 815, 848
BalI TGGCCA 1 cut(s) 1133
BanII GRGCYC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 3 cut(s) 130, 718, 1109
BccI CCATC 5 cut(s) 67, 143, 329, 752, 856
BclI TGATCA 1 cut(s) 18
BfaI CTAG 2 cut(s) 327, 624
BfmI CTRYAG 1 cut(s) 732
BfrI CTTAAG 1 cut(s) 224
BfuAI ACCTGC 1 cut(s) 914
BisI GCNGC 4 cut(s) 144, 672, 732, 1123
BlsI GCNGC 4 cut(s) 145, 673, 733, 1124
Bme18I GGWCC 1 cut(s) 926
BmgT120I GGNCC 1 cut(s) 926
BmiI GGNNCC 3 cut(s) 928, 978, 1096
BmrI ACTGGG 2 cut(s) 239, 1017
BmsI GCATC 3 cut(s) 397, 950, 1057
BmtI GCTAGC 1 cut(s) 627
BmuI ACTGGG 2 cut(s) 239, 1017
BplI GAGNNNNNCTC 4 cut(s) 901, 933, 1016, 1048
Bpu14I TTCGAA 1 cut(s) 470
BpuEI CTTGAG 1 cut(s) 314
BsaJI CCNNGG 3 cut(s) 24, 771, 1104
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 923
Bse1I ACTGG 3 cut(s) 245, 684, 1012
Bse21I CCTNAGG 1 cut(s) 918
Bse3DI GCAATG 1 cut(s) 5
BseDI CCNNGG 3 cut(s) 24, 771, 1104
BseGI GGATG 4 cut(s) 391, 412, 1027, 1048
BseLI CCNNNNNNNGG 2 cut(s) 158, 923
BseMI GCAATG 1 cut(s) 5
BseMII CTCAG 2 cut(s) 255, 932
BseNI ACTGG 3 cut(s) 245, 684, 1012
BseRI GAGGAG 1 cut(s) 529
BseX3I CGGCCG 1 cut(s) 33
BseXI GCAGC 3 cut(s) 130, 718, 1109
Bsh1236I CGCG 1 cut(s) 773
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 3 cut(s) 35, 683, 1133
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 192
BslFI GGGAC 2 cut(s) 25, 912
BslI CCNNNNNNNGG 2 cut(s) 158, 923
BsmFI GGGAC 2 cut(s) 25, 912
BsnI GGCC 3 cut(s) 35, 683, 1133
Bsp119I TTCGAA 1 cut(s) 470
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 4 cut(s) 18, 556, 563, 582
BspACI CCGC 3 cut(s) 672, 771, 773
BspANI GGCC 3 cut(s) 35, 683, 1133
BspCNI CTCAG 2 cut(s) 256, 931
BspFNI CGCG 1 cut(s) 773
BspLI GGNNCC 3 cut(s) 928, 978, 1096
BspMAI CTGCAG 1 cut(s) 736
BspMI ACCTGC 1 cut(s) 914
BspOI GCTAGC 1 cut(s) 627
BspPI GGATC 1 cut(s) 571
BspT104I TTCGAA 1 cut(s) 470
BspTI CTTAAG 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 5
BsrI ACTGG 3 cut(s) 245, 684, 1012
BssECI CCNNGG 3 cut(s) 24, 771, 1104
BssMI GATC 4 cut(s) 18, 556, 563, 582
BssNAI GTATAC 1 cut(s) 342
BssT1I CCWWGG 2 cut(s) 24, 1104
Bst1107I GTATAC 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 828
Bst6I CTCTTC 2 cut(s) 772, 1059
BstAFI CTTAAG 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 470
BstC8I GCNNGC 1 cut(s) 625
BstDEI CTNAG 4 cut(s) 264, 599, 713, 918
BstDSI CCRYGG 1 cut(s) 771
BstENI CCTNNNNNAGG 1 cut(s) 921
BstF5I GGATG 4 cut(s) 391, 412, 1027, 1048
BstFNI CGCG 1 cut(s) 773
BstKTI GATC 4 cut(s) 21, 559, 566, 585
BstMBI GATC 4 cut(s) 18, 556, 563, 582
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 5 cut(s) 452, 668, 680, 728, 1139
BstSFI CTRYAG 1 cut(s) 732
BstUI CGCG 1 cut(s) 773
BstV1I GCAGC 3 cut(s) 130, 718, 1109
BstXI CCANNNNNNTGG 1 cut(s) 50
BstZ17I GTATAC 1 cut(s) 342
BstZI CGGCCG 1 cut(s) 33
Bsu36I CCTNAGG 1 cut(s) 918
BsuRI GGCC 3 cut(s) 35, 683, 1133
BtgI CCRYGG 1 cut(s) 771
BtsCI GGATG 4 cut(s) 391, 412, 1027, 1048
BtsI GCAGTG 1 cut(s) 741
BtsIMutI CAGTG 4 cut(s) 220, 691, 741, 1005
BveI ACCTGC 1 cut(s) 914
Cac8I GCNNGC 1 cut(s) 625
Cfr13I GGNCC 1 cut(s) 926
Cfr42I CCGCGG 1 cut(s) 774
Csp6I GTAC 2 cut(s) 373, 904
CviAII CATG 2 cut(s) 376, 718
CviQI GTAC 2 cut(s) 373, 904
DdeI CTNAG 4 cut(s) 264, 599, 713, 918
DpnI GATC 4 cut(s) 20, 558, 565, 584
DpnII GATC 4 cut(s) 18, 556, 563, 582
EaeI YGGCCR 2 cut(s) 33, 1131
EagI CGGCCG 1 cut(s) 33
Eam1104I CTCTTC 2 cut(s) 772, 1059
EarI CTCTTC 2 cut(s) 772, 1059
Ecl136II GAGCTC 1 cut(s) 190
EclXI CGGCCG 1 cut(s) 33
Eco130I CCWWGG 2 cut(s) 24, 1104
Eco24I GRGCYC 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 926
Eco52I CGGCCG 1 cut(s) 33
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 917
Eco81I CCTNAGG 1 cut(s) 918
EcoICRI GAGCTC 1 cut(s) 190
EcoNI CCTNNNNNAGG 1 cut(s) 921
EcoO109I RGGNCCY 1 cut(s) 926
EcoRI GAATTC 1 cut(s) 472
EcoT14I CCWWGG 2 cut(s) 24, 1104
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 2 cut(s) 24, 1104
FaeI CATG 2 cut(s) 379, 721
FaqI GGGAC 2 cut(s) 25, 912
FatI CATG 2 cut(s) 375, 717
FauNDI CATATG 1 cut(s) 754
FbaI TGATCA 1 cut(s) 18
FblI GTMKAC 1 cut(s) 341
Fnu4HI GCNGC 4 cut(s) 144, 672, 732, 1123
FokI GGATG 4 cut(s) 398, 419, 1034, 1035
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 4 cut(s) 144, 672, 732, 1123
FspBI CTAG 2 cut(s) 327, 624
GluI GCNGC 4 cut(s) 144, 672, 732, 1123
HaeIII GGCC 3 cut(s) 35, 683, 1133
Hin1II CATG 2 cut(s) 379, 721
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 6 cut(s) 38, 89, 182, 283, 323, 694
HphI GGTGA 6 cut(s) 13, 292, 589, 649, 832, 877
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 5 cut(s) 64, 187, 556, 571, 999
Hpy188III TCNNGA 4 cut(s) 80, 293, 1052, 1061
Hpy8I GTNNAC 1 cut(s) 342
Hpy99I CGWCG 1 cut(s) 571
HpyAV CCTTC 5 cut(s) 355, 376, 637, 673, 955
HpyCH4III ACNGT 1 cut(s) 828
HpyCH4V TGCA 6 cut(s) 455, 734, 787, 1005, 1037, 1048
HpyF10VI GCNNNNNNNGC 5 cut(s) 452, 668, 680, 728, 1139
HpyF3I CTNAG 4 cut(s) 264, 599, 713, 918
Hsp92II CATG 2 cut(s) 379, 721
Ksp22I TGATCA 1 cut(s) 18
KspI CCGCGG 1 cut(s) 774
Kzo9I GATC 4 cut(s) 18, 556, 563, 582
Lsp1109I GCAGC 3 cut(s) 130, 718, 1109
LweI GCATC 3 cut(s) 397, 950, 1057
MaeI CTAG 2 cut(s) 327, 624
MalI GATC 4 cut(s) 20, 558, 565, 584
MboI GATC 4 cut(s) 18, 556, 563, 582
MboII GAAGA 8 cut(s) 241, 310, 577, 718, 759, 910, 1001, 1076
MhlI GDGCHC 1 cut(s) 192
MlsI TGGCCA 1 cut(s) 1133
MluCI AATT 5 cut(s) 103, 287, 434, 472, 1027
MluNI TGGCCA 1 cut(s) 1133
MlyI GAGTC 2 cut(s) 47, 703
MmeI TCCRAC 2 cut(s) 402, 549
Mox20I TGGCCA 1 cut(s) 1133
MroXI GAANNNNTTC 1 cut(s) 993
MscI TGGCCA 1 cut(s) 1133
MseI TTAA 3 cut(s) 225, 249, 1165
Msp20I TGGCCA 1 cut(s) 1133
MspA1I CMGCKG 1 cut(s) 773
MspCI CTTAAG 1 cut(s) 224
MvnI CGCG 1 cut(s) 773
MwoI GCNNNNNNNGC 5 cut(s) 452, 668, 680, 728, 1139
NdeI CATATG 1 cut(s) 754
NdeII GATC 4 cut(s) 18, 556, 563, 582
NheI GCTAGC 1 cut(s) 623
NlaIII CATG 2 cut(s) 379, 721
NlaIV GGNNCC 3 cut(s) 928, 978, 1096
NmeAIII GCCGAG 1 cut(s) 61
NspV TTCGAA 1 cut(s) 470
PdmI GAANNNNTTC 1 cut(s) 993
PfeI GAWTC 4 cut(s) 89, 182, 283, 323
PkrI GCNGC 4 cut(s) 145, 673, 733, 1124
PleI GAGTC 2 cut(s) 46, 702
PpsI GAGTC 2 cut(s) 46, 702
PpuMI RGGWCCY 1 cut(s) 926
Psp124BI GAGCTC 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 926
PspN4I GGNNCC 3 cut(s) 928, 978, 1096
PspPI GGNCC 1 cut(s) 926
PspPPI RGGWCCY 1 cut(s) 926
PstI CTGCAG 1 cut(s) 736
RsaI GTAC 2 cut(s) 374, 905
RsaNI GTAC 2 cut(s) 373, 904
SacI GAGCTC 1 cut(s) 192
SacII CCGCGG 1 cut(s) 774
SaqAI TTAA 3 cut(s) 225, 249, 1165
SatI GCNGC 4 cut(s) 144, 672, 732, 1123
Sau3AI GATC 4 cut(s) 18, 556, 563, 582
Sau96I GGNCC 1 cut(s) 926
SchI GAGTC 2 cut(s) 47, 703
SduI GDGCHC 1 cut(s) 192
SfaNI GCATC 3 cut(s) 397, 950, 1057
SfcI CTRYAG 1 cut(s) 732
Sfr303I CCGCGG 1 cut(s) 774
SfuI TTCGAA 1 cut(s) 470
SgrBI CCGCGG 1 cut(s) 774
SinI GGWCC 1 cut(s) 926
SmlI CTYRAG 2 cut(s) 224, 293
SmoI CTYRAG 2 cut(s) 224, 293
Sse9I AATT 5 cut(s) 103, 287, 434, 472, 1027
SsiI CCGC 3 cut(s) 672, 771, 773
SspMI CTAG 2 cut(s) 327, 624
SstI GAGCTC 1 cut(s) 192
StyI CCWWGG 2 cut(s) 24, 1104
TaaI ACNGT 1 cut(s) 828
TaqI TCGA 4 cut(s) 12, 120, 255, 470
TaqII GACCGA 1 cut(s) 194
TasI AATT 5 cut(s) 103, 287, 434, 472, 1027
TatI WGTACW 1 cut(s) 372
TauI GCSGC 1 cut(s) 674
TfiI GAWTC 4 cut(s) 89, 182, 283, 323
Tru1I TTAA 3 cut(s) 225, 249, 1165
Tru9I TTAA 3 cut(s) 225, 249, 1165
TscAI CASTG 4 cut(s) 220, 691, 741, 1012
TseI GCWGC 3 cut(s) 143, 731, 1122
TspRI CASTG 4 cut(s) 220, 691, 741, 1012
Vha464I CTTAAG 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 926
XagI CCTNNNNNAGG 1 cut(s) 921
XapI RAATTY 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 993
XspI CTAG 2 cut(s) 327, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.