Prupe.5G160700_v2.0.a1

Autophagy protein 16 (ATG16)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
14161342 .. 14164475
3134 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G160700.1

Sequence Viewer

Length: 1551 bp
ATGCTCAGTCAACTTTGTTTGTGCAGGTCACAGGAGGAGATAGCAAGGGAAGCGATAAAGCACGCACTGAAGGCTCTTCGGAAGCGGCATTTGCTCGAAGAAGGTGCTCATGCTCCGGCTTTTATCGCTCTTGCGAGGCCAATTGCTCATCAGGGCTCAGAATGGAAGGAGAAAGCAGAGAGTTTGGAACTCGAACTTCAGCAATGTTACAAAGCTCAATCTCGATTGTCCGAGCAACTTGTGGTGGAAGTAGCAGAGTCCAGAGCTTCAAAAGCTTCACTTCAAGAGAAAGAAGCAGCAGTGGCTGATCTCCAAAAGGAGTTAACAGAAAAAAGGGATGAATGCTCTCAATTAACGGTTGACTTAGAAGAGAAGATTAAAGCCTTAGAATTGGTTGTGAGTGAGAACAAGGAAATAAGAGCGCAGCTTGAAGAAATGTCTATTAGAGCTAAGAATGCTGAGGCTGAAAGTAAGGTGTTAATTGACCGCTGGATGTTGGAAAAGATGAAGGATGCTGAACGCCTTAACGAGGCAAATGCACTCTATGAAGATATGATTGAGCGGCTCAGGGCCAGTGGTCTGGAAAAACTTGCTAGGCAGCAAGTAGATGGTGTGGTCCGCCAAAGTGAAGAAGGTGCTGAGTACTTTGTGGAGTCAACAATTCCCTCTGCATGCAAGAGCAGGATCCATGCCCATGAAGGTGGCTGTGCTTCCATATTATTTGAGTACAATTCTGGCAAATTGATTACTGGAGGACAGGATGGGTCCATCAAAATGTGGGATACAAACACTGGGGCACTAAATCATACACTTCATGGTTGCATTGGTTCCGTTCTTGATATTACCATTACCCATGATAATAGATCTATCATTGCAGCAAGCAGCTCAAACAAATTGTATGCCTGGGATGTTAGCTCGGGGAGGGTTCGCCATACTCTCACTGGCCACATGGATAAAGTATGTGCTGTAGATGTTAGCAATTCAAGTCGTCATGTTGTGAGTGCAGCCTATGATCGTACCATAAAAGTATGGGATTTGCAGAAAGGTTACTGCACCAACACAATTATTTTCCCCAAAAACTGCAATGCTCTTTGCTTCAGCATGGATGGACAAACCATATGTTCTGGGCACGTTGATGGAAACCTTCGCTTGTGGGATATTGAGAAGGGAAAGCTACTCAGTGAAGTAGCTGCACATTCAAATGCTGTTACATCCATATCTTTGTCCCGAAATGGCAACGTTGTTTTGACAAGTGGGAGAGACAACGTGCATAATTTGTTTGATATGCGGTCTCTGGAAGTCTGCGGCACATTAAGAGCCACAGGAAACAGAGTGGCGTCTAACTGGAGCCGGTCCTGTATCAGTCCAGACGACAATTATGTTGCCGCTGGATCTGCCGATGGTTCTGTGTATATTTGGTCAATCTCTAAGGCCGACATTGTGAGCACTCTGAAGGAACACACTGCATCTGTGCTGTGTTGTTCATGGAGTGGGCATGGAAAACCTCTAGCTTCTGCGGACAAGAACGGCATTGTTTGCACTTGGGCGTGA

Protein Analysis

517

Amino Acids

56.77

Weight (kDa)

6.13

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 15
AccBSI CCGCTC 1 cut(s) 562
AciI CCGC 8 cut(s) 85, 487, 562, 619, 1288, 1305, 1386, 1517
AclI AACGTT 1 cut(s) 1239
AclWI GGATC 3 cut(s) 679, 692, 1399
AcoI YGGCCR 1 cut(s) 943
AcuI CTGAAG 4 cut(s) 89, 182, 1081, 1472
AcyI GRCGYC 1 cut(s) 1337
AfaI GTAC 3 cut(s) 644, 728, 1018
AfiI CCNNNNNNNGG 1 cut(s) 529
AgsI TTSAA 5 cut(s) 270, 284, 431, 984, 1200
AjnI CCWGG 1 cut(s) 902
Alw21I GWGCWC 2 cut(s) 109, 1448
Alw26I GTCTC 2 cut(s) 1254, 1296
AlwI GGATC 3 cut(s) 679, 692, 1399
AlwNI CAGNNNCTG 1 cut(s) 305
Ama87I CYCGRG 1 cut(s) 916
AoxI GGCC 4 cut(s) 137, 570, 943, 1431
ApeKI GCWGC 7 cut(s) 296, 424, 598, 875, 882, 1004, 1190
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 4 cut(s) 570, 616, 765, 1353
AvaI CYCGRG 1 cut(s) 916
AvaII GGWCC 3 cut(s) 616, 765, 1353
BaeGI GKGCMC 2 cut(s) 799, 1131
BalI TGGCCA 1 cut(s) 945
BamHI GGATCC 1 cut(s) 684
BanII GRGCYC 1 cut(s) 158
Bbv12I GWGCWC 2 cut(s) 109, 1448
BbvCI CCTCAGC 1 cut(s) 459
BbvI GCAGC 7 cut(s) 308, 436, 610, 887, 894, 1016, 1177
BccI CCATC 6 cut(s) 602, 755, 776, 1100, 1130, 1394
BceAI ACGGC 1 cut(s) 1543
BcgI CGANNNNNNTGC 4 cut(s) 86, 120, 518, 552
BciT130I CCWGG 1 cut(s) 904
BciVI GTATCC 1 cut(s) 775
BcoDI GTCTC 2 cut(s) 1254, 1296
BfaI CTAG 2 cut(s) 594, 1508
BfmI CTRYAG 1 cut(s) 966
BfuAI ACCTGC 1 cut(s) 15
BfuI GTATCC 1 cut(s) 775
BglII AGATCT 1 cut(s) 863
BmcAI AGTACT 1 cut(s) 644
Bme1390I CCNGG 1 cut(s) 904
Bme18I GGWCC 3 cut(s) 616, 765, 1353
BmeT110I CYCGRG 1 cut(s) 916
BmgT120I GGNCC 4 cut(s) 570, 616, 765, 1353
BmiI GGNNCC 4 cut(s) 686, 766, 829, 1349
BmrFI CCNGG 1 cut(s) 904
BmrI ACTGGG 1 cut(s) 801
BmsI GCATC 2 cut(s) 502, 1475
BmuI ACTGGG 1 cut(s) 801
BpmI CTGGAG 2 cut(s) 771, 1366
Bpu10I CCTNAGC 2 cut(s) 459, 566
BsaHI GRCGYC 1 cut(s) 1337
BsaI GGTCTC 1 cut(s) 1296
BsaJI CCNNGG 1 cut(s) 903
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse118I RCCGGY 1 cut(s) 1350
Bse1I ACTGG 5 cut(s) 573, 754, 796, 946, 1349
Bse3DI GCAATG 3 cut(s) 209, 870, 1090
BseBI CCWGG 1 cut(s) 904
BseDI CCNNGG 1 cut(s) 903
BseGI GGATG 7 cut(s) 343, 498, 517, 766, 913, 1111, 1211
BseLI CCNNNNNNNGG 1 cut(s) 529
BseMI GCAATG 3 cut(s) 209, 870, 1090
BseMII CTCAG 6 cut(s) 19, 171, 450, 580, 630, 1192
BseNI ACTGG 5 cut(s) 573, 754, 796, 946, 1349
BseRI GAGGAG 1 cut(s) 50
BseSI GKGCMC 2 cut(s) 799, 1131
BseXI GCAGC 7 cut(s) 308, 436, 610, 887, 894, 1016, 1177
BsgI GTGCAG 4 cut(s) 43, 1023, 1036, 1176
BshFI GGCC 4 cut(s) 139, 572, 945, 1433
BsiHKAI GWGCWC 2 cut(s) 109, 1448
BsiHKCI CYCGRG 1 cut(s) 916
BsiSI CCGG 2 cut(s) 116, 1351
BslFI GGGAC 1 cut(s) 1210
BslI CCNNNNNNNGG 1 cut(s) 529
BsmAI GTCTC 2 cut(s) 1254, 1296
BsmFI GGGAC 1 cut(s) 1210
BsmI GAATGC 2 cut(s) 347, 460
BsnI GGCC 4 cut(s) 139, 572, 945, 1433
Bso31I GGTCTC 1 cut(s) 1296
BsoBI CYCGRG 1 cut(s) 916
Bsp1286I GDGCHC 5 cut(s) 109, 158, 799, 1131, 1448
Bsp143I GATC 5 cut(s) 307, 684, 863, 1012, 1391
BspACI CCGC 8 cut(s) 85, 487, 562, 619, 1288, 1305, 1386, 1517
BspANI GGCC 4 cut(s) 139, 572, 945, 1433
BspCNI CTCAG 6 cut(s) 18, 170, 451, 579, 631, 1191
BspLI GGNNCC 4 cut(s) 686, 766, 829, 1349
BspMI ACCTGC 1 cut(s) 15
BspPI GGATC 3 cut(s) 679, 692, 1399
BspQI GCTCTTC 1 cut(s) 81
BspTNI GGTCTC 1 cut(s) 1296
BsrBI CCGCTC 1 cut(s) 562
BsrDI GCAATG 3 cut(s) 209, 870, 1090
BsrFI RCCGGY 1 cut(s) 1350
BsrI ACTGG 5 cut(s) 573, 754, 796, 946, 1349
BssAI RCCGGY 1 cut(s) 1350
BssECI CCNNGG 1 cut(s) 903
BssMI GATC 5 cut(s) 307, 684, 863, 1012, 1391
BssNI GRCGYC 1 cut(s) 1337
Bst2UI CCWGG 1 cut(s) 904
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 2 cut(s) 81, 363
BstACI GRCGYC 1 cut(s) 1337
BstAPI GCANNNNNTGC 1 cut(s) 1536
BstC8I GCNNGC 3 cut(s) 63, 673, 880
BstENI CCTNNNNNAGG 1 cut(s) 527
BstF5I GGATG 7 cut(s) 343, 498, 517, 766, 913, 1111, 1211
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 5 cut(s) 310, 687, 866, 1015, 1394
BstMAI GTCTC 2 cut(s) 1254, 1296
BstMBI GATC 5 cut(s) 307, 684, 863, 1012, 1391
BstMWI GCNNNNNNNGC 9 cut(s) 50, 71, 91, 125, 272, 302, 455, 1394, 1536
BstNI CCWGG 1 cut(s) 904
BstNSI RCATGY 1 cut(s) 675
BstSCI CCNGG 1 cut(s) 902
BstSFI CTRYAG 1 cut(s) 966
BstSLI GKGCMC 2 cut(s) 799, 1131
BstV1I GCAGC 7 cut(s) 308, 436, 610, 887, 894, 1016, 1177
BstX2I RGATCY 3 cut(s) 684, 863, 1391
BstXI CCANNNNNNTGG 2 cut(s) 580, 701
BstYI RGATCY 3 cut(s) 684, 863, 1391
BsuI GTATCC 1 cut(s) 775
BsuRI GGCC 4 cut(s) 139, 572, 945, 1433
BtsCI GGATG 7 cut(s) 343, 498, 517, 766, 913, 1111, 1211
BtsI GCAGTG 2 cut(s) 306, 1461
BtsIMutI CAGTG 7 cut(s) 65, 306, 580, 789, 939, 1186, 1461
BveI ACCTGC 1 cut(s) 15
Cac8I GCNNGC 3 cut(s) 63, 673, 880
CaiI CAGNNNCTG 1 cut(s) 305
CfoI GCGC 1 cut(s) 424
Cfr10I RCCGGY 1 cut(s) 1350
Cfr13I GGNCC 4 cut(s) 570, 616, 765, 1353
CseI GACGC 1 cut(s) 1326
Csp6I GTAC 3 cut(s) 643, 727, 1017
CviQI GTAC 3 cut(s) 643, 727, 1017
DpnI GATC 5 cut(s) 309, 686, 865, 1014, 1393
DpnII GATC 5 cut(s) 307, 684, 863, 1012, 1391
EaeI YGGCCR 1 cut(s) 943
Eam1104I CTCTTC 2 cut(s) 81, 363
EarI CTCTTC 2 cut(s) 81, 363
EciI GGCGGA 1 cut(s) 608
Eco24I GRGCYC 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 1296
Eco47I GGWCC 3 cut(s) 616, 765, 1353
Eco57I CTGAAG 4 cut(s) 89, 182, 1081, 1472
Eco88I CYCGRG 1 cut(s) 916
EcoNI CCTNNNNNAGG 1 cut(s) 527
EcoRII CCWGG 1 cut(s) 902
EcoT38I GRGCYC 1 cut(s) 158
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FaqI GGGAC 1 cut(s) 1210
FauNDI CATATG 1 cut(s) 1118
FokI GGATG 7 cut(s) 350, 505, 524, 773, 920, 1118, 1198
FriOI GRGCYC 1 cut(s) 158
FspBI CTAG 2 cut(s) 594, 1508
GlaI GCGC 1 cut(s) 423
GsuI CTGGAG 2 cut(s) 771, 1366
HaeIII GGCC 4 cut(s) 139, 572, 945, 1433
HapII CCGG 2 cut(s) 116, 1351
HgaI GACGC 1 cut(s) 1326
HhaI GCGC 1 cut(s) 424
Hin1I GRCGYC 1 cut(s) 1337
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HincII GTYRAC 4 cut(s) 11, 324, 361, 657
HindII GTYRAC 4 cut(s) 11, 324, 361, 657
HindIII AAGCTT 1 cut(s) 273
HinfI GANTC 2 cut(s) 257, 653
HpaI GTTAAC 1 cut(s) 324
HpaII CCGG 2 cut(s) 116, 1351
Hpy166II GTNNAC 4 cut(s) 11, 324, 361, 657
Hpy188I TCNGA 4 cut(s) 81, 160, 232, 1452
Hpy188III TCNNGA 8 cut(s) 222, 261, 284, 581, 836, 1227, 1295, 1367
Hpy8I GTNNAC 4 cut(s) 11, 324, 361, 657
HpyAV CCTTC 9 cut(s) 64, 95, 160, 502, 626, 692, 1154, 1159, 1447
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 3 cut(s) 1131, 1239, 1266
HpyF10VI GCNNNNNNNGC 9 cut(s) 50, 71, 91, 125, 272, 302, 455, 1394, 1536
HpySE526I ACGT 3 cut(s) 1131, 1239, 1266
Hsp92I GRCGYC 1 cut(s) 1337
HspAI GCGC 1 cut(s) 422
KspAI GTTAAC 1 cut(s) 324
Kzo9I GATC 5 cut(s) 307, 684, 863, 1012, 1391
LguI GCTCTTC 1 cut(s) 81
LmnI GCTCC 2 cut(s) 118, 1347
Lsp1109I GCAGC 7 cut(s) 308, 436, 610, 887, 894, 1016, 1177
LweI GCATC 2 cut(s) 502, 1475
MaeI CTAG 2 cut(s) 594, 1508
MaeII ACGT 3 cut(s) 1131, 1239, 1266
MaeIII GTNAC 4 cut(s) 27, 206, 1046, 1207
MalI GATC 5 cut(s) 309, 686, 865, 1014, 1393
MbiI CCGCTC 1 cut(s) 562
MboI GATC 5 cut(s) 307, 684, 863, 1012, 1391
MboII GAAGA 7 cut(s) 68, 110, 380, 385, 443, 560, 641
MfeI CAATTG 1 cut(s) 141
MflI RGATCY 3 cut(s) 684, 863, 1391
MhlI GDGCHC 5 cut(s) 109, 158, 799, 1131, 1448
MlsI TGGCCA 1 cut(s) 945
MluNI TGGCCA 1 cut(s) 945
MlyI GAGTC 2 cut(s) 266, 662
MmeI TCCRAC 1 cut(s) 477
MnlI CCTC 8 cut(s) 28, 129, 454, 523, 676, 746, 915, 1515
Mox20I TGGCCA 1 cut(s) 945
MscI TGGCCA 1 cut(s) 945
MseI TTAA 6 cut(s) 323, 353, 378, 479, 525, 1313
MslI CAYNNNNRTG 5 cut(s) 693, 699, 773, 1134, 1200
Msp20I TGGCCA 1 cut(s) 945
MspA1I CMGCKG 2 cut(s) 489, 1388
MspI CCGG 2 cut(s) 116, 1351
MspR9I CCNGG 1 cut(s) 904
MunI CAATTG 1 cut(s) 141
Mva1269I GAATGC 2 cut(s) 347, 460
MvaI CCWGG 1 cut(s) 904
MwoI GCNNNNNNNGC 9 cut(s) 50, 71, 91, 125, 272, 302, 455, 1394, 1536
NdeI CATATG 1 cut(s) 1118
NdeII GATC 5 cut(s) 307, 684, 863, 1012, 1391
NlaIV GGNNCC 4 cut(s) 686, 766, 829, 1349
NmuCI GTSAC 1 cut(s) 27
NspI RCATGY 1 cut(s) 675
PaeI GCATGC 1 cut(s) 675
PciSI GCTCTTC 1 cut(s) 81
PctI GAATGC 2 cut(s) 347, 460
PleI GAGTC 2 cut(s) 265, 661
PpsI GAGTC 2 cut(s) 265, 661
Psp1406I AACGTT 1 cut(s) 1239
Psp6I CCWGG 1 cut(s) 902
PspGI CCWGG 1 cut(s) 902
PspN4I GGNNCC 4 cut(s) 686, 766, 829, 1349
PspPI GGNCC 4 cut(s) 570, 616, 765, 1353
PstNI CAGNNNCTG 1 cut(s) 305
PsuI RGATCY 3 cut(s) 684, 863, 1391
RsaI GTAC 3 cut(s) 644, 728, 1018
RsaNI GTAC 3 cut(s) 643, 727, 1017
RseI CAYNNNNRTG 5 cut(s) 693, 699, 773, 1134, 1200
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 6 cut(s) 323, 353, 378, 479, 525, 1313
Sau3AI GATC 5 cut(s) 307, 684, 863, 1012, 1391
Sau96I GGNCC 4 cut(s) 570, 616, 765, 1353
ScaI AGTACT 1 cut(s) 644
SchI GAGTC 2 cut(s) 266, 662
ScrFI CCNGG 1 cut(s) 904
SduI GDGCHC 5 cut(s) 109, 158, 799, 1131, 1448
SfaNI GCATC 2 cut(s) 502, 1475
SfcI CTRYAG 1 cut(s) 966
SinI GGWCC 3 cut(s) 616, 765, 1353
SmiMI CAYNNNNRTG 5 cut(s) 693, 699, 773, 1134, 1200
SphI GCATGC 1 cut(s) 675
SsiI CCGC 8 cut(s) 85, 487, 562, 619, 1288, 1305, 1386, 1517
SspMI CTAG 2 cut(s) 594, 1508
StyD4I CCNGG 1 cut(s) 902
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 3 cut(s) 1134, 1242, 1269
TaqI TCGA 3 cut(s) 96, 192, 223
TatI WGTACW 2 cut(s) 642, 726
TauI GCSGC 4 cut(s) 88, 565, 1308, 1388
Tru1I TTAA 6 cut(s) 323, 353, 378, 479, 525, 1313
Tru9I TTAA 6 cut(s) 323, 353, 378, 479, 525, 1313
TscAI CASTG 7 cut(s) 72, 306, 580, 796, 946, 1186, 1468
TseFI GTSAC 1 cut(s) 27
TseI GCWGC 7 cut(s) 296, 424, 598, 875, 882, 1004, 1190
Tsp45I GTSAC 1 cut(s) 27
TspDTI ATGAA 6 cut(s) 354, 521, 561, 711, 803, 1473
TspGWI ACGGA 1 cut(s) 820
TspRI CASTG 7 cut(s) 72, 306, 580, 796, 946, 1186, 1468
VpaK11BI GGWCC 3 cut(s) 616, 765, 1353
XagI CCTNNNNNAGG 1 cut(s) 527
XceI RCATGY 1 cut(s) 675
XcmI CCANNNNNNNNNTGG 1 cut(s) 938
XspI CTAG 2 cut(s) 594, 1508
ZrmI AGTACT 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.