Autophagy protein 16 (ATG16)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G50230 |
| fragaria_vesca | FvH4_5g06790 FvH4_5g06790 |
| malus_domestica | MD06G1161200.v1.1 MD14G1166400.v1.1 |
| prunus_persica | Prupe.5G160700_v2.0.a1 Prupe.5G160700_v2.0.a1 |
| pyrus_communis | pycom06g14390 pycom14g13900 |
| rosa_chinensis | RchiOBHm_Chr7g0191761 RchiOBHm_Chr7g0191771 |
| rosa_laevigata | RLG00000004427 |
| rosa_multiflora | Rmu_co8375695.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00263550 |
| rosa_rugosa | Rorug06G0511200 |
| rosa_samantha | Rh7AG121000 Rh7BG122700 Rh7CG125600 Rh7DG124300 |
| rosa_wichuraiana | Rw7G010300 Rw7G010310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 15 |
| AccBSI | CCGCTC | 1 cut(s) | 562 |
| AciI | CCGC | 8 cut(s) | 85, 487, 562, 619, 1288, 1305, 1386, 1517 |
| AclI | AACGTT | 1 cut(s) | 1239 |
| AclWI | GGATC | 3 cut(s) | 679, 692, 1399 |
| AcoI | YGGCCR | 1 cut(s) | 943 |
| AcuI | CTGAAG | 4 cut(s) | 89, 182, 1081, 1472 |
| AcyI | GRCGYC | 1 cut(s) | 1337 |
| AfaI | GTAC | 3 cut(s) | 644, 728, 1018 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 529 |
| AgsI | TTSAA | 5 cut(s) | 270, 284, 431, 984, 1200 |
| AjnI | CCWGG | 1 cut(s) | 902 |
| Alw21I | GWGCWC | 2 cut(s) | 109, 1448 |
| Alw26I | GTCTC | 2 cut(s) | 1254, 1296 |
| AlwI | GGATC | 3 cut(s) | 679, 692, 1399 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 305 |
| Ama87I | CYCGRG | 1 cut(s) | 916 |
| AoxI | GGCC | 4 cut(s) | 137, 570, 943, 1431 |
| ApeKI | GCWGC | 7 cut(s) | 296, 424, 598, 875, 882, 1004, 1190 |
| AspLEI | GCGC | 1 cut(s) | 424 |
| AspS9I | GGNCC | 4 cut(s) | 570, 616, 765, 1353 |
| AvaI | CYCGRG | 1 cut(s) | 916 |
| AvaII | GGWCC | 3 cut(s) | 616, 765, 1353 |
| BaeGI | GKGCMC | 2 cut(s) | 799, 1131 |
| BalI | TGGCCA | 1 cut(s) | 945 |
| BamHI | GGATCC | 1 cut(s) | 684 |
| BanII | GRGCYC | 1 cut(s) | 158 |
| Bbv12I | GWGCWC | 2 cut(s) | 109, 1448 |
| BbvCI | CCTCAGC | 1 cut(s) | 459 |
| BbvI | GCAGC | 7 cut(s) | 308, 436, 610, 887, 894, 1016, 1177 |
| BccI | CCATC | 6 cut(s) | 602, 755, 776, 1100, 1130, 1394 |
| BceAI | ACGGC | 1 cut(s) | 1543 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 86, 120, 518, 552 |
| BciT130I | CCWGG | 1 cut(s) | 904 |
| BciVI | GTATCC | 1 cut(s) | 775 |
| BcoDI | GTCTC | 2 cut(s) | 1254, 1296 |
| BfaI | CTAG | 2 cut(s) | 594, 1508 |
| BfmI | CTRYAG | 1 cut(s) | 966 |
| BfuAI | ACCTGC | 1 cut(s) | 15 |
| BfuI | GTATCC | 1 cut(s) | 775 |
| BglII | AGATCT | 1 cut(s) | 863 |
| BmcAI | AGTACT | 1 cut(s) | 644 |
| Bme1390I | CCNGG | 1 cut(s) | 904 |
| Bme18I | GGWCC | 3 cut(s) | 616, 765, 1353 |
| BmeT110I | CYCGRG | 1 cut(s) | 916 |
| BmgT120I | GGNCC | 4 cut(s) | 570, 616, 765, 1353 |
| BmiI | GGNNCC | 4 cut(s) | 686, 766, 829, 1349 |
| BmrFI | CCNGG | 1 cut(s) | 904 |
| BmrI | ACTGGG | 1 cut(s) | 801 |
| BmsI | GCATC | 2 cut(s) | 502, 1475 |
| BmuI | ACTGGG | 1 cut(s) | 801 |
| BpmI | CTGGAG | 2 cut(s) | 771, 1366 |
| Bpu10I | CCTNAGC | 2 cut(s) | 459, 566 |
| BsaHI | GRCGYC | 1 cut(s) | 1337 |
| BsaI | GGTCTC | 1 cut(s) | 1296 |
| BsaJI | CCNNGG | 1 cut(s) | 903 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 529 |
| Bse118I | RCCGGY | 1 cut(s) | 1350 |
| Bse1I | ACTGG | 5 cut(s) | 573, 754, 796, 946, 1349 |
| Bse3DI | GCAATG | 3 cut(s) | 209, 870, 1090 |
| BseBI | CCWGG | 1 cut(s) | 904 |
| BseDI | CCNNGG | 1 cut(s) | 903 |
| BseGI | GGATG | 7 cut(s) | 343, 498, 517, 766, 913, 1111, 1211 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 529 |
| BseMI | GCAATG | 3 cut(s) | 209, 870, 1090 |
| BseMII | CTCAG | 6 cut(s) | 19, 171, 450, 580, 630, 1192 |
| BseNI | ACTGG | 5 cut(s) | 573, 754, 796, 946, 1349 |
| BseRI | GAGGAG | 1 cut(s) | 50 |
| BseSI | GKGCMC | 2 cut(s) | 799, 1131 |
| BseXI | GCAGC | 7 cut(s) | 308, 436, 610, 887, 894, 1016, 1177 |
| BsgI | GTGCAG | 4 cut(s) | 43, 1023, 1036, 1176 |
| BshFI | GGCC | 4 cut(s) | 139, 572, 945, 1433 |
| BsiHKAI | GWGCWC | 2 cut(s) | 109, 1448 |
| BsiHKCI | CYCGRG | 1 cut(s) | 916 |
| BsiSI | CCGG | 2 cut(s) | 116, 1351 |
| BslFI | GGGAC | 1 cut(s) | 1210 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 529 |
| BsmAI | GTCTC | 2 cut(s) | 1254, 1296 |
| BsmFI | GGGAC | 1 cut(s) | 1210 |
| BsmI | GAATGC | 2 cut(s) | 347, 460 |
| BsnI | GGCC | 4 cut(s) | 139, 572, 945, 1433 |
| Bso31I | GGTCTC | 1 cut(s) | 1296 |
| BsoBI | CYCGRG | 1 cut(s) | 916 |
| Bsp1286I | GDGCHC | 5 cut(s) | 109, 158, 799, 1131, 1448 |
| Bsp143I | GATC | 5 cut(s) | 307, 684, 863, 1012, 1391 |
| BspACI | CCGC | 8 cut(s) | 85, 487, 562, 619, 1288, 1305, 1386, 1517 |
| BspANI | GGCC | 4 cut(s) | 139, 572, 945, 1433 |
| BspCNI | CTCAG | 6 cut(s) | 18, 170, 451, 579, 631, 1191 |
| BspLI | GGNNCC | 4 cut(s) | 686, 766, 829, 1349 |
| BspMI | ACCTGC | 1 cut(s) | 15 |
| BspPI | GGATC | 3 cut(s) | 679, 692, 1399 |
| BspQI | GCTCTTC | 1 cut(s) | 81 |
| BspTNI | GGTCTC | 1 cut(s) | 1296 |
| BsrBI | CCGCTC | 1 cut(s) | 562 |
| BsrDI | GCAATG | 3 cut(s) | 209, 870, 1090 |
| BsrFI | RCCGGY | 1 cut(s) | 1350 |
| BsrI | ACTGG | 5 cut(s) | 573, 754, 796, 946, 1349 |
| BssAI | RCCGGY | 1 cut(s) | 1350 |
| BssECI | CCNNGG | 1 cut(s) | 903 |
| BssMI | GATC | 5 cut(s) | 307, 684, 863, 1012, 1391 |
| BssNI | GRCGYC | 1 cut(s) | 1337 |
| Bst2UI | CCWGG | 1 cut(s) | 904 |
| Bst4CI | ACNGT | 1 cut(s) | 358 |
| Bst6I | CTCTTC | 2 cut(s) | 81, 363 |
| BstACI | GRCGYC | 1 cut(s) | 1337 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1536 |
| BstC8I | GCNNGC | 3 cut(s) | 63, 673, 880 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 527 |
| BstF5I | GGATG | 7 cut(s) | 343, 498, 517, 766, 913, 1111, 1211 |
| BstHHI | GCGC | 1 cut(s) | 424 |
| BstKTI | GATC | 5 cut(s) | 310, 687, 866, 1015, 1394 |
| BstMAI | GTCTC | 2 cut(s) | 1254, 1296 |
| BstMBI | GATC | 5 cut(s) | 307, 684, 863, 1012, 1391 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 50, 71, 91, 125, 272, 302, 455, 1394, 1536 |
| BstNI | CCWGG | 1 cut(s) | 904 |
| BstNSI | RCATGY | 1 cut(s) | 675 |
| BstSCI | CCNGG | 1 cut(s) | 902 |
| BstSFI | CTRYAG | 1 cut(s) | 966 |
| BstSLI | GKGCMC | 2 cut(s) | 799, 1131 |
| BstV1I | GCAGC | 7 cut(s) | 308, 436, 610, 887, 894, 1016, 1177 |
| BstX2I | RGATCY | 3 cut(s) | 684, 863, 1391 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 580, 701 |
| BstYI | RGATCY | 3 cut(s) | 684, 863, 1391 |
| BsuI | GTATCC | 1 cut(s) | 775 |
| BsuRI | GGCC | 4 cut(s) | 139, 572, 945, 1433 |
| BtsCI | GGATG | 7 cut(s) | 343, 498, 517, 766, 913, 1111, 1211 |
| BtsI | GCAGTG | 2 cut(s) | 306, 1461 |
| BtsIMutI | CAGTG | 7 cut(s) | 65, 306, 580, 789, 939, 1186, 1461 |
| BveI | ACCTGC | 1 cut(s) | 15 |
| Cac8I | GCNNGC | 3 cut(s) | 63, 673, 880 |
| CaiI | CAGNNNCTG | 1 cut(s) | 305 |
| CfoI | GCGC | 1 cut(s) | 424 |
| Cfr10I | RCCGGY | 1 cut(s) | 1350 |
| Cfr13I | GGNCC | 4 cut(s) | 570, 616, 765, 1353 |
| CseI | GACGC | 1 cut(s) | 1326 |
| Csp6I | GTAC | 3 cut(s) | 643, 727, 1017 |
| CviQI | GTAC | 3 cut(s) | 643, 727, 1017 |
| DpnI | GATC | 5 cut(s) | 309, 686, 865, 1014, 1393 |
| DpnII | GATC | 5 cut(s) | 307, 684, 863, 1012, 1391 |
| EaeI | YGGCCR | 1 cut(s) | 943 |
| Eam1104I | CTCTTC | 2 cut(s) | 81, 363 |
| EarI | CTCTTC | 2 cut(s) | 81, 363 |
| EciI | GGCGGA | 1 cut(s) | 608 |
| Eco24I | GRGCYC | 1 cut(s) | 158 |
| Eco31I | GGTCTC | 1 cut(s) | 1296 |
| Eco47I | GGWCC | 3 cut(s) | 616, 765, 1353 |
| Eco57I | CTGAAG | 4 cut(s) | 89, 182, 1081, 1472 |
| Eco88I | CYCGRG | 1 cut(s) | 916 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 527 |
| EcoRII | CCWGG | 1 cut(s) | 902 |
| EcoT38I | GRGCYC | 1 cut(s) | 158 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 264, 296 |
| FaqI | GGGAC | 1 cut(s) | 1210 |
| FauNDI | CATATG | 1 cut(s) | 1118 |
| FokI | GGATG | 7 cut(s) | 350, 505, 524, 773, 920, 1118, 1198 |
| FriOI | GRGCYC | 1 cut(s) | 158 |
| FspBI | CTAG | 2 cut(s) | 594, 1508 |
| GlaI | GCGC | 1 cut(s) | 423 |
| GsuI | CTGGAG | 2 cut(s) | 771, 1366 |
| HaeIII | GGCC | 4 cut(s) | 139, 572, 945, 1433 |
| HapII | CCGG | 2 cut(s) | 116, 1351 |
| HgaI | GACGC | 1 cut(s) | 1326 |
| HhaI | GCGC | 1 cut(s) | 424 |
| Hin1I | GRCGYC | 1 cut(s) | 1337 |
| Hin6I | GCGC | 1 cut(s) | 422 |
| HinP1I | GCGC | 1 cut(s) | 422 |
| HincII | GTYRAC | 4 cut(s) | 11, 324, 361, 657 |
| HindII | GTYRAC | 4 cut(s) | 11, 324, 361, 657 |
| HindIII | AAGCTT | 1 cut(s) | 273 |
| HinfI | GANTC | 2 cut(s) | 257, 653 |
| HpaI | GTTAAC | 1 cut(s) | 324 |
| HpaII | CCGG | 2 cut(s) | 116, 1351 |
| Hpy166II | GTNNAC | 4 cut(s) | 11, 324, 361, 657 |
| Hpy188I | TCNGA | 4 cut(s) | 81, 160, 232, 1452 |
| Hpy188III | TCNNGA | 8 cut(s) | 222, 261, 284, 581, 836, 1227, 1295, 1367 |
| Hpy8I | GTNNAC | 4 cut(s) | 11, 324, 361, 657 |
| HpyAV | CCTTC | 9 cut(s) | 64, 95, 160, 502, 626, 692, 1154, 1159, 1447 |
| HpyCH4III | ACNGT | 1 cut(s) | 358 |
| HpyCH4IV | ACGT | 3 cut(s) | 1131, 1239, 1266 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 50, 71, 91, 125, 272, 302, 455, 1394, 1536 |
| HpySE526I | ACGT | 3 cut(s) | 1131, 1239, 1266 |
| Hsp92I | GRCGYC | 1 cut(s) | 1337 |
| HspAI | GCGC | 1 cut(s) | 422 |
| KspAI | GTTAAC | 1 cut(s) | 324 |
| Kzo9I | GATC | 5 cut(s) | 307, 684, 863, 1012, 1391 |
| LguI | GCTCTTC | 1 cut(s) | 81 |
| LmnI | GCTCC | 2 cut(s) | 118, 1347 |
| Lsp1109I | GCAGC | 7 cut(s) | 308, 436, 610, 887, 894, 1016, 1177 |
| LweI | GCATC | 2 cut(s) | 502, 1475 |
| MaeI | CTAG | 2 cut(s) | 594, 1508 |
| MaeII | ACGT | 3 cut(s) | 1131, 1239, 1266 |
| MaeIII | GTNAC | 4 cut(s) | 27, 206, 1046, 1207 |
| MalI | GATC | 5 cut(s) | 309, 686, 865, 1014, 1393 |
| MbiI | CCGCTC | 1 cut(s) | 562 |
| MboI | GATC | 5 cut(s) | 307, 684, 863, 1012, 1391 |
| MboII | GAAGA | 7 cut(s) | 68, 110, 380, 385, 443, 560, 641 |
| MfeI | CAATTG | 1 cut(s) | 141 |
| MflI | RGATCY | 3 cut(s) | 684, 863, 1391 |
| MhlI | GDGCHC | 5 cut(s) | 109, 158, 799, 1131, 1448 |
| MlsI | TGGCCA | 1 cut(s) | 945 |
| MluNI | TGGCCA | 1 cut(s) | 945 |
| MlyI | GAGTC | 2 cut(s) | 266, 662 |
| MmeI | TCCRAC | 1 cut(s) | 477 |
| MnlI | CCTC | 8 cut(s) | 28, 129, 454, 523, 676, 746, 915, 1515 |
| Mox20I | TGGCCA | 1 cut(s) | 945 |
| MscI | TGGCCA | 1 cut(s) | 945 |
| MseI | TTAA | 6 cut(s) | 323, 353, 378, 479, 525, 1313 |
| MslI | CAYNNNNRTG | 5 cut(s) | 693, 699, 773, 1134, 1200 |
| Msp20I | TGGCCA | 1 cut(s) | 945 |
| MspA1I | CMGCKG | 2 cut(s) | 489, 1388 |
| MspI | CCGG | 2 cut(s) | 116, 1351 |
| MspR9I | CCNGG | 1 cut(s) | 904 |
| MunI | CAATTG | 1 cut(s) | 141 |
| Mva1269I | GAATGC | 2 cut(s) | 347, 460 |
| MvaI | CCWGG | 1 cut(s) | 904 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 50, 71, 91, 125, 272, 302, 455, 1394, 1536 |
| NdeI | CATATG | 1 cut(s) | 1118 |
| NdeII | GATC | 5 cut(s) | 307, 684, 863, 1012, 1391 |
| NlaIV | GGNNCC | 4 cut(s) | 686, 766, 829, 1349 |
| NmuCI | GTSAC | 1 cut(s) | 27 |
| NspI | RCATGY | 1 cut(s) | 675 |
| PaeI | GCATGC | 1 cut(s) | 675 |
| PciSI | GCTCTTC | 1 cut(s) | 81 |
| PctI | GAATGC | 2 cut(s) | 347, 460 |
| PleI | GAGTC | 2 cut(s) | 265, 661 |
| PpsI | GAGTC | 2 cut(s) | 265, 661 |
| Psp1406I | AACGTT | 1 cut(s) | 1239 |
| Psp6I | CCWGG | 1 cut(s) | 902 |
| PspGI | CCWGG | 1 cut(s) | 902 |
| PspN4I | GGNNCC | 4 cut(s) | 686, 766, 829, 1349 |
| PspPI | GGNCC | 4 cut(s) | 570, 616, 765, 1353 |
| PstNI | CAGNNNCTG | 1 cut(s) | 305 |
| PsuI | RGATCY | 3 cut(s) | 684, 863, 1391 |
| RsaI | GTAC | 3 cut(s) | 644, 728, 1018 |
| RsaNI | GTAC | 3 cut(s) | 643, 727, 1017 |
| RseI | CAYNNNNRTG | 5 cut(s) | 693, 699, 773, 1134, 1200 |
| SapI | GCTCTTC | 1 cut(s) | 81 |
| SaqAI | TTAA | 6 cut(s) | 323, 353, 378, 479, 525, 1313 |
| Sau3AI | GATC | 5 cut(s) | 307, 684, 863, 1012, 1391 |
| Sau96I | GGNCC | 4 cut(s) | 570, 616, 765, 1353 |
| ScaI | AGTACT | 1 cut(s) | 644 |
| SchI | GAGTC | 2 cut(s) | 266, 662 |
| ScrFI | CCNGG | 1 cut(s) | 904 |
| SduI | GDGCHC | 5 cut(s) | 109, 158, 799, 1131, 1448 |
| SfaNI | GCATC | 2 cut(s) | 502, 1475 |
| SfcI | CTRYAG | 1 cut(s) | 966 |
| SinI | GGWCC | 3 cut(s) | 616, 765, 1353 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 693, 699, 773, 1134, 1200 |
| SphI | GCATGC | 1 cut(s) | 675 |
| SsiI | CCGC | 8 cut(s) | 85, 487, 562, 619, 1288, 1305, 1386, 1517 |
| SspMI | CTAG | 2 cut(s) | 594, 1508 |
| StyD4I | CCNGG | 1 cut(s) | 902 |
| TaaI | ACNGT | 1 cut(s) | 358 |
| TaiI | ACGT | 3 cut(s) | 1134, 1242, 1269 |
| TaqI | TCGA | 3 cut(s) | 96, 192, 223 |
| TatI | WGTACW | 2 cut(s) | 642, 726 |
| TauI | GCSGC | 4 cut(s) | 88, 565, 1308, 1388 |
| Tru1I | TTAA | 6 cut(s) | 323, 353, 378, 479, 525, 1313 |
| Tru9I | TTAA | 6 cut(s) | 323, 353, 378, 479, 525, 1313 |
| TscAI | CASTG | 7 cut(s) | 72, 306, 580, 796, 946, 1186, 1468 |
| TseFI | GTSAC | 1 cut(s) | 27 |
| TseI | GCWGC | 7 cut(s) | 296, 424, 598, 875, 882, 1004, 1190 |
| Tsp45I | GTSAC | 1 cut(s) | 27 |
| TspDTI | ATGAA | 6 cut(s) | 354, 521, 561, 711, 803, 1473 |
| TspGWI | ACGGA | 1 cut(s) | 820 |
| TspRI | CASTG | 7 cut(s) | 72, 306, 580, 796, 946, 1186, 1468 |
| VpaK11BI | GGWCC | 3 cut(s) | 616, 765, 1353 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 527 |
| XceI | RCATGY | 1 cut(s) | 675 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 938 |
| XspI | CTAG | 2 cut(s) | 594, 1508 |
| ZrmI | AGTACT | 1 cut(s) | 644 |