Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009792

Physical Location & Seq

Genomic Coordinates Forward (+)

16729227 .. 16730697

Gene Structure 1471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g13900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAACTTCAGCAGTGTTACAAAGCTCAATCTCGGCTGTCCGAGCAACTCGTGGTGGAAGTAGCGGAGTCCAGAACTTCAAAAGCTTCACTTCAAGAGAAAGAAGCAGCAGTGGCTGATCTTCAGAAGGAATTATCTGAAAAAAGGGATGAATGTTCTCAATTAGTGGCTGACTTGGAAGAGAAAATTAAAGCTTTGGAATTGGTTGTGAGTGAGAACAAGGAAATAAGAGCGCAGCTAGAAGAAATGTCTATAAGAGCTAAGAACGCTGAGGCTGAAAATAAGGTGTTAATTGACCGCTGGATGTTGGAGAAGATGAAGGATGCAGAACGGCTTAACGAGGCAAATGCACTCTATGAAGATATGATTGAGCGGCTCAGGGCCAGCGGTTTGGAAAAACTTGCGAGGCAGCAAGTAGATGGTGTTGTCCGCCAAAGTGAAGAAGGTGCTGAGTACTTTTTGGAGTCAACCATTCCCTCCACATGCACGAATAGGATCCCTGCCCATGATGGTGGCTGCGCTTCCATATTATTTGAGTACAATTCTGGGAAATTGATTACTGGCGGACAGGATGGGTCCATCAAAATGTGGGATACAAATACTGGGTCACTAACTCGTACACTTAATGGTTGCATTGGTTCTGTTCTGGATCGATCACGATTACTCATGATAATAGATCTATCATTGCAGCAAGCAGCTCTAACAAATTGTATGCCTGGGATGTTAACTTGGGGAGGGTTCGACACACTCTCACTGGCCACATGGATAAAGTGTGTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000421 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005776 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006897 GO:0006907 GO:0006909 GO:0006914 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016740 GO:0019538 GO:0019776 GO:0019941 GO:0022607 GO:0030163 GO:0030587 GO:0031090 GO:0031154 GO:0032502 GO:0032991 GO:0034274 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0051179 GO:0051234 GO:0051603 GO:0051703 GO:0051704 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0090382 GO:0090702 GO:0098588 GO:0098657 GO:0098805 GO:0099120 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04621 map04136 map04138 map04140 map04621

Pfam Domains

Protein Families

ATG16 WD40

Protein Analysis

261

Amino Acids

29.01

Weight (kDa)

4.85

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50230
fragaria_vesca	FvH4_5g06790 FvH4_5g06790
malus_domestica	MD06G1161200.v1.1 MD14G1166400.v1.1
prunus_persica	Prupe.5G160700_v2.0.a1 Prupe.5G160700_v2.0.a1
pyrus_communis	pycom06g14390 pycom14g13900
rosa_chinensis	RchiOBHm_Chr7g0191761 RchiOBHm_Chr7g0191771
rosa_laevigata	RLG00000004427
rosa_multiflora	Rmu_co8375695.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263550
rosa_rugosa	Rorug06G0511200
rosa_samantha	Rh7AG121000 Rh7BG122700 Rh7CG125600 Rh7DG124300
rosa_wichuraiana	Rw7G010300 Rw7G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	373
AciI	CCGC	6 cut(s)	65, 298, 373, 387, 430, 564
AclWI	GGATC	3 cut(s)	490, 503, 657
AcoI	YGGCCR	1 cut(s)	756
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	3 cut(s)	455, 539, 619
AgsI	TTSAA	2 cut(s)	81, 95
AjnI	CCWGG	1 cut(s)	715
AluBI	AGCT	6 cut(s)	26, 86, 194, 238, 260, 698
AluI	AGCT	6 cut(s)	26, 86, 194, 238, 260, 698
AlwI	GGATC	3 cut(s)	490, 503, 657
AlwNI	CAGNNNCTG	1 cut(s)	116
AoxI	GGCC	2 cut(s)	381, 756
ApeKI	GCWGC	6 cut(s)	107, 235, 409, 516, 688, 695
ArsI	GACNNNNNNTTYG	2 cut(s)	590, 622
AspLEI	GCGC	2 cut(s)	235, 521
AspS9I	GGNCC	2 cut(s)	381, 576
AvaII	GGWCC	1 cut(s)	576
BalI	TGGCCA	1 cut(s)	758
BamHI	GGATCC	1 cut(s)	495
BauI	CACGAG	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	6 cut(s)	119, 247, 421, 503, 700, 707
BccI	CCATC	4 cut(s)	413, 503, 566, 587
BceAI	ACGGC	1 cut(s)	347
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciT130I	CCWGG	1 cut(s)	717
BciVI	GTATCC	1 cut(s)	586
BfaI	CTAG	1 cut(s)	239
BfuI	GTATCC	1 cut(s)	586
BglII	AGATCT	1 cut(s)	676
BisI	GCNGC	7 cut(s)	108, 236, 374, 410, 517, 689, 696
BlsI	GCNGC	7 cut(s)	109, 237, 375, 411, 518, 690, 697
BmcAI	AGTACT	1 cut(s)	455
Bme1390I	CCNGG	1 cut(s)	717
Bme18I	GGWCC	1 cut(s)	576
BmgT120I	GGNCC	2 cut(s)	381, 576
BmiI	GGNNCC	2 cut(s)	497, 577
BmrFI	CCNGG	1 cut(s)	717
BmrI	ACTGGG	1 cut(s)	612
BmsI	GCATC	1 cut(s)	313
BmuI	ACTGGG	1 cut(s)	612
Bpu10I	CCTNAGC	2 cut(s)	270, 377
Bsa29I	ATCGAT	1 cut(s)	652
BsaJI	CCNNGG	1 cut(s)	716
Bse1I	ACTGG	3 cut(s)	565, 607, 759
Bse3DI	GCAATG	1 cut(s)	683
BseBI	CCWGG	1 cut(s)	717
BseCI	ATCGAT	1 cut(s)	652
BseDI	CCNNGG	1 cut(s)	716
BseGI	GGATG	5 cut(s)	154, 309, 328, 577, 726
BseMI	GCAATG	1 cut(s)	683
BseMII	CTCAG	3 cut(s)	261, 391, 441
BseNI	ACTGG	3 cut(s)	565, 607, 759
BseXI	GCAGC	6 cut(s)	119, 247, 421, 503, 700, 707
BshFI	GGCC	2 cut(s)	383, 758
BshVI	ATCGAT	1 cut(s)	652
BsnI	GGCC	2 cut(s)	383, 758
Bsp143I	GATC	5 cut(s)	118, 495, 649, 653, 676
BspACI	CCGC	6 cut(s)	65, 298, 373, 387, 430, 564
BspANI	GGCC	2 cut(s)	383, 758
BspCNI	CTCAG	3 cut(s)	262, 390, 442
BspDI	ATCGAT	1 cut(s)	652
BspHI	TCATGA	1 cut(s)	666
BspLI	GGNNCC	2 cut(s)	497, 577
BspPI	GGATC	3 cut(s)	490, 503, 657
BsrBI	CCGCTC	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	683
BsrI	ACTGG	3 cut(s)	565, 607, 759
BssECI	CCNNGG	1 cut(s)	716
BssMI	GATC	5 cut(s)	118, 495, 649, 653, 676
BssSI	CACGAG	1 cut(s)	50
Bst2BI	CACGAG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	717
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	385, 693
BstDEI	CTNAG	4 cut(s)	261, 270, 377, 450
BstF5I	GGATG	5 cut(s)	154, 309, 328, 577, 726
BstHHI	GCGC	2 cut(s)	235, 521
BstKTI	GATC	5 cut(s)	121, 498, 652, 656, 679
BstMBI	GATC	5 cut(s)	118, 495, 649, 653, 676
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 113, 266
BstNI	CCWGG	1 cut(s)	717
BstNSI	RCATGY	1 cut(s)	486
BstSCI	CCNGG	1 cut(s)	715
BstV1I	GCAGC	6 cut(s)	119, 247, 421, 503, 700, 707
BstX2I	RGATCY	2 cut(s)	495, 676
BstXI	CCANNNNNNTGG	2 cut(s)	391, 512
BstYI	RGATCY	2 cut(s)	495, 676
Bsu15I	ATCGAT	1 cut(s)	652
BsuI	GTATCC	1 cut(s)	586
BsuRI	GGCC	2 cut(s)	383, 758
BsuTUI	ATCGAT	1 cut(s)	652
BtsCI	GGATG	5 cut(s)	154, 309, 328, 577, 726
BtsI	GCAGTG	2 cut(s)	20, 117
BtsIMutI	CAGTG	3 cut(s)	20, 117, 752
Cac8I	GCNNGC	2 cut(s)	385, 693
CaiI	CAGNNNCTG	1 cut(s)	116
CciI	TCATGA	1 cut(s)	666
CfoI	GCGC	2 cut(s)	235, 521
Cfr13I	GGNCC	2 cut(s)	381, 576
ClaI	ATCGAT	1 cut(s)	652
Csp6I	GTAC	3 cut(s)	454, 538, 618
CviAII	CATG	4 cut(s)	483, 506, 667, 762
CviQI	GTAC	3 cut(s)	454, 538, 618
DdeI	CTNAG	4 cut(s)	261, 270, 377, 450
DpnI	GATC	5 cut(s)	120, 497, 651, 655, 678
DpnII	GATC	5 cut(s)	118, 495, 649, 653, 676
EaeI	YGGCCR	1 cut(s)	756
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
EciI	GGCGGA	2 cut(s)	419, 579
Eco47I	GGWCC	1 cut(s)	576
Eco57I	CTGAAG	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	715
FaeI	CATG	4 cut(s)	486, 509, 670, 765
FaiI	YATR	9 cut(s)	254, 357, 365, 484, 507, 527, 668, 713, 763
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FatI	CATG	4 cut(s)	482, 505, 666, 761
Fnu4HI	GCNGC	7 cut(s)	108, 236, 374, 410, 517, 689, 696
FokI	GGATG	5 cut(s)	161, 316, 335, 584, 733
Fsp4HI	GCNGC	7 cut(s)	108, 236, 374, 410, 517, 689, 696
FspBI	CTAG	1 cut(s)	239
GlaI	GCGC	2 cut(s)	234, 520
GluI	GCNGC	7 cut(s)	108, 236, 374, 410, 517, 689, 696
HaeIII	GGCC	2 cut(s)	383, 758
HhaI	GCGC	2 cut(s)	235, 521
Hin1II	CATG	4 cut(s)	486, 509, 670, 765
Hin6I	GCGC	2 cut(s)	233, 519
HinP1I	GCGC	2 cut(s)	233, 519
HincII	GTYRAC	2 cut(s)	468, 726
HindII	GTYRAC	2 cut(s)	468, 726
HindIII	AAGCTT	2 cut(s)	84, 192
HinfI	GANTC	2 cut(s)	68, 464
HpaI	GTTAAC	1 cut(s)	726
Hpy166II	GTNNAC	3 cut(s)	468, 620, 726
Hpy188I	TCNGA	3 cut(s)	43, 126, 139
Hpy188III	TCNNGA	5 cut(s)	72, 95, 647, 657, 667
Hpy8I	GTNNAC	3 cut(s)	468, 620, 726
HpyAV	CCTTC	3 cut(s)	121, 313, 437
HpyCH4V	TGCA	6 cut(s)	326, 350, 486, 633, 688, 778
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 113, 266
HpyF3I	CTNAG	4 cut(s)	261, 270, 377, 450
Hsp92II	CATG	4 cut(s)	486, 509, 670, 765
HspAI	GCGC	2 cut(s)	233, 519
KspAI	GTTAAC	1 cut(s)	726
Kzo9I	GATC	5 cut(s)	118, 495, 649, 653, 676
Lsp1109I	GCAGC	6 cut(s)	119, 247, 421, 503, 700, 707
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	239
MaeIII	GTNAC	2 cut(s)	17, 606
MalI	GATC	5 cut(s)	120, 497, 651, 655, 678
MbiI	CCGCTC	1 cut(s)	373
MboI	GATC	5 cut(s)	118, 495, 649, 653, 676
MboII	GAAGA	6 cut(s)	113, 191, 254, 325, 371, 452
MflI	RGATCY	2 cut(s)	495, 676
MlsI	TGGCCA	1 cut(s)	758
MluCI	AATT	8 cut(s)	131, 161, 186, 200, 291, 541, 551, 706
MluNI	TGGCCA	1 cut(s)	758
MlyI	GAGTC	2 cut(s)	77, 473
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	5 cut(s)	265, 334, 399, 487, 728
Mox20I	TGGCCA	1 cut(s)	758
MscI	TGGCCA	1 cut(s)	758
MseI	TTAA	5 cut(s)	189, 290, 336, 624, 725
MslI	CAYNNNNRTG	2 cut(s)	510, 584
Msp20I	TGGCCA	1 cut(s)	758
MspA1I	CMGCKG	2 cut(s)	300, 387
MspR9I	CCNGG	1 cut(s)	717
MvaI	CCWGG	1 cut(s)	717
MwoI	GCNNNNNNNGC	3 cut(s)	43, 113, 266
NdeII	GATC	5 cut(s)	118, 495, 649, 653, 676
NlaIII	CATG	4 cut(s)	486, 509, 670, 765
NlaIV	GGNNCC	2 cut(s)	497, 577
NmeAIII	GCCGAG	1 cut(s)	13
NmuCI	GTSAC	1 cut(s)	606
NspI	RCATGY	1 cut(s)	486
PagI	TCATGA	1 cut(s)	666
PkrI	GCNGC	7 cut(s)	109, 237, 375, 411, 518, 690, 697
PleI	GAGTC	2 cut(s)	76, 472
PpsI	GAGTC	2 cut(s)	76, 472
Psp6I	CCWGG	1 cut(s)	715
PspGI	CCWGG	1 cut(s)	715
PspN4I	GGNNCC	2 cut(s)	497, 577
PspPI	GGNCC	2 cut(s)	381, 576
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	2 cut(s)	495, 676
RsaI	GTAC	3 cut(s)	455, 539, 619
RsaNI	GTAC	3 cut(s)	454, 538, 618
RseI	CAYNNNNRTG	2 cut(s)	510, 584
SaqAI	TTAA	5 cut(s)	189, 290, 336, 624, 725
SatI	GCNGC	7 cut(s)	108, 236, 374, 410, 517, 689, 696
Sau3AI	GATC	5 cut(s)	118, 495, 649, 653, 676
Sau96I	GGNCC	2 cut(s)	381, 576
ScaI	AGTACT	1 cut(s)	455
SchI	GAGTC	2 cut(s)	77, 473
ScrFI	CCNGG	1 cut(s)	717
SetI	ASST	8 cut(s)	28, 88, 196, 240, 262, 288, 448, 700
SfaNI	GCATC	1 cut(s)	313
SinI	GGWCC	1 cut(s)	576
SmiMI	CAYNNNNRTG	2 cut(s)	510, 584
Sse9I	AATT	8 cut(s)	131, 161, 186, 200, 291, 541, 551, 706
SsiI	CCGC	6 cut(s)	65, 298, 373, 387, 430, 564
SspMI	CTAG	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	715
TaqI	TCGA	2 cut(s)	652, 741
TasI	AATT	8 cut(s)	131, 161, 186, 200, 291, 541, 551, 706
TatI	WGTACW	2 cut(s)	453, 537
TauI	GCSGC	1 cut(s)	376
Tru1I	TTAA	5 cut(s)	189, 290, 336, 624, 725
Tru9I	TTAA	5 cut(s)	189, 290, 336, 624, 725
TscAI	CASTG	3 cut(s)	20, 117, 759
TseFI	GTSAC	1 cut(s)	606
TseI	GCWGC	6 cut(s)	107, 235, 409, 516, 688, 695
Tsp45I	GTSAC	1 cut(s)	606
TspDTI	ATGAA	3 cut(s)	165, 332, 372
TspRI	CASTG	3 cut(s)	20, 117, 759
VpaK11BI	GGWCC	1 cut(s)	576
XceI	RCATGY	1 cut(s)	486
XspI	CTAG	1 cut(s)	239
ZrmI	AGTACT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.