Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009792

Physical Location & Seq

Genomic Coordinates Forward (+)

10428023 .. 10430910

Gene Structure 2888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17138

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGCTCCAGCGTATATCGCTCTCGCCAATCCAATTGCTCATCAGTGGAAAAGGCTCTGAATGGAAGGAAAAGGCTGATAATTTGGAACTGGAGCTTCAACAATGCTATAAAGCTCAATCTCGGCTGTCGGAGCAGCTTGTGGTGGAAGTAGCAGAGTCTAGGTCTTCGAAAGCTTTACTTCAGGAGAAAGAAGCAGCGATTGTGGATCAGCAGAATGAGCTGACACAAAAAAGGGATGAGTGCTCTCAGTTGAAGGCGGAGTTAGAAAAGAAGATTCAAGCTCTAGAGTTGGTTATGAGTGAGAACAATGAAATACGGGCGCAGCTAGAAGAAATGTCTGTTAGAGCTAAGAATGCTGAAGCTGAAAATAAGGTGTTAATTGACCGCTGGATGTTGGAAAAAATGAAGGATGCTGAACGCCTAAATGAGGCAAATGCACTATATGAAGAAATGCTTGAGCGGATCAAGGCCAGTGGTTTGCAAAAACTAGCCATGCAGCAAGTAGATGGTGTGGTCCGCCAAAGTGAAGAAGGTGCTGAGTACTTTGTGGAGTCAACCAATCCCACCACATGCAAGAACAGGATCAATGCCCATGACGGTGGCTGTGCTTCCATATTATTTGAGTACAACTCAGGCAAATTGATTTCTGGTGGACAGGATGGGACAATCAAAATGTGGGATACAAGTACAGGGGCTTTGACTAATACACTTCATGGTTGCATTGGTTCTGTTCTTGACCTTTCCATTACCCATGATAATAGATCTATCATCGCAGCAAGCAGTTCGAACAAATTGTACATATGGGATGCTAACTTGGGGAGAGTGCGCCATACTCTCACCGGCCACATGGATAAAGTTTGTGCTGTAGATGTGAGTAAGTTCTCAAGTCGTCACATTGTGAGTGCAGCCTACGATCGTACTATAAAAGTCTGGGATTTGCAAAAAGGTTACTGCACCAACACAATAATCTTCCCCAAACACTGCAATGCTCTTTGCTTCAGCATGGACGGGCAGACCATTTGCTCAGGTCATGTTGATGGGAATCTTCGGCTGTGGGATATCCAGAAAGGAAAGCTACTCAACGAAGTGGCTGCACACTCAAATGCTGTTACGTCTATATCTTTGTCGCGAAGTGGCAACATGGTATTGACGAGTGGGAGGGACAATGTGCATCACCTTTTCGATATGAGAACCCTAGAAGTTTGTGGCACATTGAGAGCCACCGGAAACAGAGTAGCATCTAATTGGAGCCGGTCCTGTATCAGTCCAGATGACAATTACGTTGCTGCTGGATCTGCCGATGGTGCTGTGTATATCTGGTCTATAGCCAAAGGTGACATTGTGAGCACTCTGAAGGAACACACTAATTCTGTCCTCTGCTGCTCATGGAGTGGACATGGAAAACCTCTAGCTTCTGCGGACAAGAATGGAGTAATTTGTACTTGGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000421 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005776 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006897 GO:0006907 GO:0006909 GO:0006914 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016740 GO:0019538 GO:0019776 GO:0019941 GO:0022607 GO:0030163 GO:0030587 GO:0031090 GO:0031154 GO:0032502 GO:0032991 GO:0034274 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0051179 GO:0051234 GO:0051603 GO:0051703 GO:0051704 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0090382 GO:0090702 GO:0098588 GO:0098657 GO:0098805 GO:0099120 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04621 map04136 map04138 map04140 map04621

Pfam Domains

Protein Families

ATG16 WD40

Protein Analysis

483

Amino Acids

53.35

Weight (kDa)

6.15

Isoelectric Point (pI)

31.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG16	PF08614	23 - 142	1e-11	Autophagy protein 16 (ATG16)
Beta-prop_THOC3	PF25174	186 - 279	3.6e-13	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	187 - 323	2.1e-24	WDR5 beta-propeller domain
WDR55	PF24796	187 - 397	1e-17	WDR55
WD40_CDC20-Fz	PF24807	189 - 389	6e-22	CDC20/Fizzy WD40 domain
Beta-prop_SCAP	PF24017	190 - 271	3.8e-06	SCAP Beta-propeller
Beta-prop_TEP1_2nd	PF25047	190 - 315	7.1e-10	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	191 - 269	3.7e-10	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	195 - 323	4.8e-21	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	195 - 346	3e-16	WDR36/Utp21 second beta-propeller domain
WD40_Gbeta	PF25391	195 - 289	1.5e-08	G protein beta WD-40 repeat protein
WD40_WDHD1_1st	PF24817	197 - 480	5.8e-29	WDHD1 first WD40 domain
WD40_Prp19	PF24814	201 - 410	1e-29	Prp19 WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	210 - 313	1.9e-07	MABP1/WDR62 second WD40 domain
Beta-prop_ACSF4	PF13570	218 - 480	9.5e-09	Beta-alanine-activating enzyme, beta-propeller
Beta-prop_WDR3_2nd	PF25172	237 - 352	1.1e-11	WDR3 second beta-propeller domain
Beta-prop_EML	PF23409	248 - 395	2.9e-12	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	254 - 335	8.4e-06	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	256 - 390	2.1e-11	WDR36/Utp21 first beta-propeller
Beta-prop_THOC3	PF25174	258 - 481	1.1e-36	THOC3 beta-propeller domain
WD40_Gbeta	PF25391	268 - 440	8.2e-17	G protein beta WD-40 repeat protein
NBCH_WD40	PF20426	274 - 444	8.7e-08	Neurobeachin beta propeller domain
WD40	PF00400	274 - 312	1.6e-06	WD domain, G-beta repeat
EIF3I	PF24805	276 - 339	4.9e-07	EIF3I
Beta-prop_SCAP	PF24017	291 - 450	2.5e-06	SCAP Beta-propeller
WDR90_beta-prop_4th	PF23342	295 - 390	9.6e-06	WDR90, 4th beta-propeller
Beta-prop_EML_2	PF23414	296 - 408	1.7e-12	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd	PF25172	296 - 399	6.5e-12	WDR3 second beta-propeller domain
Beta-prop_WDR90_POC16_2nd	PF23393	296 - 415	3e-10	WDR90/POC16, second beta-propeller
WDR55	PF24796	325 - 482	6.3e-14	WDR55
ANAPC4_WD40	PF12894	327 - 374	6.2e-06	Anaphase-promoting complex subunit 4 WD40 domain
WD40_CDC20-Fz	PF24807	327 - 467	6.6e-17	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	328 - 413	1.1e-15	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	328 - 414	2.9e-12	WDR3 first beta-propeller domain
EIF3I	PF24805	328 - 428	1.2e-11	EIF3I
Beta-prop_VPS8	PF23410	329 - 396	7e-06	Vps8 beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	330 - 397	3.5e-07	MABP1/WDR62 second WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	330 - 402	1.3e-07	CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	332 - 402	2.6e-06	TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	339 - 475	7e-09	WDR36/Utp21 second beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	362 - 446	1.9e-06	TEP-1 second beta-propeller
WDR90_beta-prop_4th	PF23342	416 - 480	1.3e-06	WDR90, 4th beta-propeller
Beta-prop_WDR3_1st	PF25173	417 - 482	2.8e-10	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	420 - 482	3.3e-10	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	421 - 482	9.3e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	422 - 482	1.4e-06	Prp19 WD40 domain
Beta-prop_IFT140_1st	PF23383	423 - 482	6e-07	IFT140 first beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50230
fragaria_vesca	FvH4_5g06790 FvH4_5g06790
malus_domestica	MD06G1161200.v1.1 MD14G1166400.v1.1
prunus_persica	Prupe.5G160700_v2.0.a1 Prupe.5G160700_v2.0.a1
pyrus_communis	pycom06g14390 pycom14g13900
rosa_chinensis	RchiOBHm_Chr7g0191761 RchiOBHm_Chr7g0191771
rosa_laevigata	RLG00000004427
rosa_multiflora	Rmu_co8375695.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263550
rosa_rugosa	Rorug06G0511200
rosa_samantha	Rh7AG121000 Rh7BG122700 Rh7CG125600 Rh7DG124300
rosa_wichuraiana	Rw7G010300 Rw7G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	460
AccII	CGCG	1 cut(s)	1129
AciI	CCGC	5 cut(s)	257, 385, 460, 517, 1418
AclWI	GGATC	4 cut(s)	213, 470, 590, 1300
AcoI	YGGCCR	1 cut(s)	841
AcuI	CTGAAG	4 cut(s)	164, 378, 982, 1373
AdeI	CACNNNGTG	1 cut(s)	898
AfaI	GTAC	6 cut(s)	542, 626, 688, 797, 919, 1441
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	3 cut(s)	98, 253, 278
AjiI	CACGTC	1 cut(s)	1449
Alw21I	GWGCWC	2 cut(s)	245, 1349
AlwI	GGATC	4 cut(s)	213, 470, 590, 1300
AoxI	GGCC	2 cut(s)	468, 841
ApeKI	GCWGC	9 cut(s)	133, 194, 322, 496, 773, 905, 1091, 1286, 1380
AspLEI	GCGC	2 cut(s)	322, 828
AspS9I	GGNCC	2 cut(s)	514, 1254
AsuHPI	GGTGA	3 cut(s)	829, 1166, 1346
AsuII	TTCGAA	2 cut(s)	167, 785
AvaII	GGWCC	2 cut(s)	514, 1254
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	2 cut(s)	245, 1349
BbvI	GCAGC	9 cut(s)	145, 206, 334, 508, 785, 917, 1078, 1273, 1367
BccI	CCATC	4 cut(s)	500, 653, 1031, 1295
BcgI	CGANNNNNNTGC	4 cut(s)	765, 799, 1073, 1107
BciVI	GTATCC	1 cut(s)	673
BfaI	CTAG	6 cut(s)	159, 284, 326, 488, 1196, 1409
BfmI	CTRYAG	2 cut(s)	864, 1323
BfuI	GTATCC	1 cut(s)	673
BglII	AGATCT	1 cut(s)	761
BisI	GCNGC	9 cut(s)	134, 195, 323, 497, 774, 906, 1092, 1287, 1381
BlsI	GCNGC	9 cut(s)	135, 196, 324, 498, 775, 907, 1093, 1288, 1382
BmcAI	AGTACT	1 cut(s)	542
Bme18I	GGWCC	2 cut(s)	514, 1254
BmgBI	CACGTC	1 cut(s)	1449
BmgT120I	GGNCC	2 cut(s)	514, 1254
BmiI	GGNNCC	1 cut(s)	1250
BmsI	GCATC	4 cut(s)	400, 796, 1180, 1247
BpiI	GAAGAC	1 cut(s)	156
BplI	GAGNNNNNCTC	2 cut(s)	614, 646
BpmI	CTGGAG	1 cut(s)	110
Bpu10I	CCTNAGC	1 cut(s)	1024
Bpu14I	TTCGAA	2 cut(s)	167, 785
BpuEI	CTTGAG	2 cut(s)	476, 868
BsaBI	GATNNNNATC	1 cut(s)	1041
BsaWI	WCCGGW	1 cut(s)	1223
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse118I	RCCGGY	2 cut(s)	839, 1251
Bse1I	ACTGG	2 cut(s)	93, 471
Bse3DI	GCAATG	1 cut(s)	991
Bse8I	GATNNNNATC	1 cut(s)	1041
BseGI	GGATG	5 cut(s)	241, 396, 415, 664, 811
BseJI	GATNNNNATC	1 cut(s)	1041
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	991
BseMII	CTCAG	4 cut(s)	260, 528, 645, 1038
BseNI	ACTGG	2 cut(s)	93, 471
BseXI	GCAGC	9 cut(s)	145, 206, 334, 508, 785, 917, 1078, 1273, 1367
BsgI	GTGCAG	3 cut(s)	924, 937, 1077
Bsh1236I	CGCG	1 cut(s)	1129
Bsh1285I	CGRYCG	1 cut(s)	916
BshFI	GGCC	2 cut(s)	470, 843
BsiEI	CGRYCG	1 cut(s)	916
BsiHKAI	GWGCWC	2 cut(s)	245, 1349
BsiSI	CCGG	3 cut(s)	840, 1224, 1252
BslFI	GGGAC	2 cut(s)	676, 1175
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmFI	GGGAC	2 cut(s)	676, 1175
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	470, 843
Bsp119I	TTCGAA	2 cut(s)	167, 785
Bsp1286I	GDGCHC	2 cut(s)	245, 1349
Bsp1407I	TGTACA	1 cut(s)	795
Bsp143I	GATC	6 cut(s)	205, 462, 582, 761, 913, 1292
Bsp68I	TCGCGA	1 cut(s)	1129
BspACI	CCGC	5 cut(s)	257, 385, 460, 517, 1418
BspANI	GGCC	2 cut(s)	470, 843
BspCNI	CTCAG	4 cut(s)	259, 529, 644, 1037
BspFNI	CGCG	1 cut(s)	1129
BspLI	GGNNCC	1 cut(s)	1250
BspPI	GGATC	4 cut(s)	213, 470, 590, 1300
BspT104I	TTCGAA	2 cut(s)	167, 785
BsrBI	CCGCTC	1 cut(s)	460
BsrDI	GCAATG	1 cut(s)	991
BsrFI	RCCGGY	2 cut(s)	839, 1251
BsrGI	TGTACA	1 cut(s)	795
BsrI	ACTGG	2 cut(s)	93, 471
BssAI	RCCGGY	2 cut(s)	839, 1251
BssMI	GATC	6 cut(s)	205, 462, 582, 761, 913, 1292
Bst4CI	ACNGT	1 cut(s)	599
BstAUI	TGTACA	1 cut(s)	795
BstBI	TTCGAA	2 cut(s)	167, 785
BstC8I	GCNNGC	1 cut(s)	778
BstDEI	CTNAG	5 cut(s)	246, 348, 537, 631, 1024
BstENI	CCTNNNNNAGG	1 cut(s)	425
BstF5I	GGATG	5 cut(s)	241, 396, 415, 664, 811
BstFNI	CGCG	1 cut(s)	1129
BstHHI	GCGC	2 cut(s)	322, 828
BstKTI	GATC	6 cut(s)	208, 465, 585, 764, 916, 1295
BstMBI	GATC	6 cut(s)	205, 462, 582, 761, 913, 1292
BstMCI	CGRYCG	1 cut(s)	916
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 130, 217, 353, 1295, 1304
BstNSI	RCATGY	1 cut(s)	573
BstSFI	CTRYAG	2 cut(s)	864, 1323
BstUI	CGCG	1 cut(s)	1129
BstV1I	GCAGC	9 cut(s)	145, 206, 334, 508, 785, 917, 1078, 1273, 1367
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	2 cut(s)	761, 1292
BstXI	CCANNNNNNTGG	1 cut(s)	599
BstYI	RGATCY	2 cut(s)	761, 1292
BsuI	GTATCC	1 cut(s)	673
BsuRI	GGCC	2 cut(s)	470, 843
BtgZI	GCGATG	1 cut(s)	754
BtrI	CACGTC	1 cut(s)	1449
BtsCI	GGATG	5 cut(s)	241, 396, 415, 664, 811
BtsI	GCAGTG	1 cut(s)	979
BtsIMutI	CAGTG	3 cut(s)	49, 478, 979
BtuMI	TCGCGA	1 cut(s)	1129
Cac8I	GCNNGC	1 cut(s)	778
CfoI	GCGC	2 cut(s)	322, 828
Cfr10I	RCCGGY	2 cut(s)	839, 1251
Cfr13I	GGNCC	2 cut(s)	514, 1254
Csp6I	GTAC	6 cut(s)	541, 625, 687, 796, 918, 1440
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviQI	GTAC	6 cut(s)	541, 625, 687, 796, 918, 1440
DdeI	CTNAG	5 cut(s)	246, 348, 537, 631, 1024
DpnI	GATC	6 cut(s)	207, 464, 584, 763, 915, 1294
DpnII	GATC	6 cut(s)	205, 462, 582, 761, 913, 1292
DraIII	CACNNNGTG	1 cut(s)	898
EaeI	YGGCCR	1 cut(s)	841
EciI	GGCGGA	2 cut(s)	272, 506
Eco32I	GATATC	1 cut(s)	1060
Eco47I	GGWCC	2 cut(s)	514, 1254
Eco57I	CTGAAG	4 cut(s)	164, 378, 982, 1373
EcoNI	CCTNNNNNAGG	1 cut(s)	425
EcoRV	GATATC	1 cut(s)	1060
FalI	AAGNNNNNCTT	4 cut(s)	162, 194, 438, 470
FaqI	GGGAC	2 cut(s)	676, 1175
FauNDI	CATATG	1 cut(s)	800
Fnu4HI	GCNGC	9 cut(s)	134, 195, 323, 497, 774, 906, 1092, 1287, 1381
FokI	GGATG	5 cut(s)	248, 403, 422, 671, 818
Fsp4HI	GCNGC	9 cut(s)	134, 195, 323, 497, 774, 906, 1092, 1287, 1381
FspBI	CTAG	6 cut(s)	159, 284, 326, 488, 1196, 1409
GlaI	GCGC	2 cut(s)	321, 827
GluI	GCNGC	9 cut(s)	134, 195, 323, 497, 774, 906, 1092, 1287, 1381
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	470, 843
HapII	CCGG	3 cut(s)	840, 1224, 1252
HhaI	GCGC	2 cut(s)	322, 828
Hin6I	GCGC	2 cut(s)	320, 826
HinP1I	GCGC	2 cut(s)	320, 826
HincII	GTYRAC	1 cut(s)	555
HindII	GTYRAC	1 cut(s)	555
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	4 cut(s)	155, 274, 551, 1042
HpaII	CCGG	3 cut(s)	840, 1224, 1252
HphI	GGTGA	3 cut(s)	829, 1166, 1346
Hpy166II	GTNNAC	3 cut(s)	555, 653, 1394
Hpy188I	TCNGA	3 cut(s)	58, 130, 1353
Hpy188III	TCNNGA	6 cut(s)	182, 284, 734, 1063, 1128, 1268
Hpy8I	GTNNAC	3 cut(s)	555, 653, 1394
HpyAV	CCTTC	5 cut(s)	58, 247, 400, 524, 1348
HpyCH4III	ACNGT	1 cut(s)	599
HpyCH4IV	ACGT	3 cut(s)	1112, 1281, 1448
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 130, 217, 353, 1295, 1304
HpyF3I	CTNAG	5 cut(s)	246, 348, 537, 631, 1024
HpySE526I	ACGT	3 cut(s)	1112, 1281, 1448
HspAI	GCGC	2 cut(s)	320, 826
Kzo9I	GATC	6 cut(s)	205, 462, 582, 761, 913, 1292
LmnI	GCTCC	4 cut(s)	9, 91, 130, 1248
Lsp1109I	GCAGC	9 cut(s)	145, 206, 334, 508, 785, 917, 1078, 1273, 1367
LweI	GCATC	4 cut(s)	400, 796, 1180, 1247
MaeI	CTAG	6 cut(s)	159, 284, 326, 488, 1196, 1409
MaeII	ACGT	3 cut(s)	1112, 1281, 1448
MaeIII	GTNAC	4 cut(s)	890, 947, 1108, 1334
MalI	GATC	6 cut(s)	207, 464, 584, 763, 915, 1294
MbiI	CCGCTC	1 cut(s)	460
MboI	GATC	6 cut(s)	205, 462, 582, 761, 913, 1292
MboII	GAAGA	7 cut(s)	156, 283, 341, 458, 539, 961, 1037
MfeI	CAATTG	1 cut(s)	32
MflI	RGATCY	2 cut(s)	761, 1292
MhlI	GDGCHC	2 cut(s)	245, 1349
MluCI	AATT	9 cut(s)	32, 79, 378, 638, 791, 1243, 1276, 1366, 1434
MlyI	GAGTC	2 cut(s)	164, 560
MmeI	TCCRAC	2 cut(s)	108, 375
MnlI	CCTC	4 cut(s)	421, 1152, 1385, 1416
MseI	TTAA	1 cut(s)	377
MslI	CAYNNNNRTG	4 cut(s)	597, 984, 1035, 1101
MspA1I	CMGCKG	1 cut(s)	387
MspI	CCGG	3 cut(s)	840, 1224, 1252
MunI	CAATTG	1 cut(s)	32
Mva1269I	GAATGC	1 cut(s)	358
MvnI	CGCG	1 cut(s)	1129
MwoI	GCNNNNNNNGC	6 cut(s)	16, 130, 217, 353, 1295, 1304
NdeI	CATATG	1 cut(s)	800
NdeII	GATC	6 cut(s)	205, 462, 582, 761, 913, 1292
NlaIV	GGNNCC	1 cut(s)	1250
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	2 cut(s)	890, 1334
NruI	TCGCGA	1 cut(s)	1129
NspI	RCATGY	1 cut(s)	573
NspV	TTCGAA	2 cut(s)	167, 785
PctI	GAATGC	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	274, 1042
PkrI	GCNGC	9 cut(s)	135, 196, 324, 498, 775, 907, 1093, 1288, 1382
Ple19I	CGATCG	1 cut(s)	916
PleI	GAGTC	2 cut(s)	163, 559
PpsI	GAGTC	2 cut(s)	163, 559
PspN4I	GGNNCC	1 cut(s)	1250
PspPI	GGNCC	2 cut(s)	514, 1254
PsrI	GAACNNNNNNTAC	2 cut(s)	779, 811
PsuI	RGATCY	2 cut(s)	761, 1292
PvuI	CGATCG	1 cut(s)	916
RruI	TCGCGA	1 cut(s)	1129
RsaI	GTAC	6 cut(s)	542, 626, 688, 797, 919, 1441
RsaNI	GTAC	6 cut(s)	541, 625, 687, 796, 918, 1440
RseI	CAYNNNNRTG	4 cut(s)	597, 984, 1035, 1101
SaqAI	TTAA	1 cut(s)	377
SatI	GCNGC	9 cut(s)	134, 195, 323, 497, 774, 906, 1092, 1287, 1381
Sau3AI	GATC	6 cut(s)	205, 462, 582, 761, 913, 1292
Sau96I	GGNCC	2 cut(s)	514, 1254
ScaI	AGTACT	1 cut(s)	542
SchI	GAGTC	2 cut(s)	164, 560
SduI	GDGCHC	2 cut(s)	245, 1349
SfaNI	GCATC	4 cut(s)	400, 796, 1180, 1247
SfcI	CTRYAG	2 cut(s)	864, 1323
SfuI	TTCGAA	2 cut(s)	167, 785
SinI	GGWCC	2 cut(s)	514, 1254
SmiMI	CAYNNNNRTG	4 cut(s)	597, 984, 1035, 1101
SmlI	CTYRAG	2 cut(s)	455, 883
SmoI	CTYRAG	2 cut(s)	455, 883
Sse9I	AATT	9 cut(s)	32, 79, 378, 638, 791, 1243, 1276, 1366, 1434
SsiI	CCGC	5 cut(s)	257, 385, 460, 517, 1418
SspMI	CTAG	6 cut(s)	159, 284, 326, 488, 1196, 1409
TaaI	ACNGT	1 cut(s)	599
TaiI	ACGT	3 cut(s)	1115, 1284, 1451
TaqI	TCGA	3 cut(s)	167, 785, 1182
TasI	AATT	9 cut(s)	32, 79, 378, 638, 791, 1243, 1276, 1366, 1434
TatI	WGTACW	5 cut(s)	540, 624, 686, 795, 1439
TfiI	GAWTC	2 cut(s)	274, 1042
Tru1I	TTAA	1 cut(s)	377
Tru9I	TTAA	1 cut(s)	377
TscAI	CASTG	3 cut(s)	49, 478, 986
TseFI	GTSAC	2 cut(s)	890, 1334
TseI	GCWGC	9 cut(s)	133, 194, 322, 496, 773, 905, 1091, 1286, 1380
Tsp45I	GTSAC	2 cut(s)	890, 1334
TspDTI	ATGAA	4 cut(s)	324, 419, 459, 701
TspRI	CASTG	3 cut(s)	49, 478, 986
VpaK11BI	GGWCC	2 cut(s)	514, 1254
XagI	CCTNNNNNAGG	1 cut(s)	425
XbaI	TCTAGA	1 cut(s)	283
XceI	RCATGY	1 cut(s)	573
XspI	CTAG	6 cut(s)	159, 284, 326, 488, 1196, 1409
ZrmI	AGTACT	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.