Rw7G010300

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0009792
Physical Location & Seq
Forward (+)
9592253 .. 9595225
2973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G010300.1

Sequence Viewer

Length: 852 bp
ATGTCCAGGTATGATTACTCTGGATATGGGCAGTCATCAGGCAAGCCAAGTGAACATAATACTTATGCAGATATTGAAGCTGCATATAAGTGTCTCGAAGAGAGGTATGGTGCCAAGCAGGAGGACATAATCCTCTATGGTCAATCTGTCGGAAGTGGCCCTACTGTTGATCTTGCTGCTCGTTTGCCTCAACTGAGAGCAATTGTTCTGCATAGTCCGATATTATCAGGGTTAAGAGTTATGTATTCTGTGAAGCGCAGTTATTGGTTTGATATCTACAAGAACATTGATAAAATCCCACTGGTGAAATGTCCTGTGCTGGTAATACATGGAACATGTGATGAAGTTGTTGACTGCTCTCACGGCAAGCAACTTTGGCTACTGTGCCAAGAGAAATACGAACCTCTATGGCTCAAAGGCGGAAATCACTGCAATTTGGAACTCTATCCAGAATATATTAGACATCTCAACAAGTTCATATCCACTATTGAAAAAGCGCCTCCACGCAAGTTGAGTTCAAGGAAGAGCACAGACTGTGTCGAATGTCCTAGGCGTAGTGTTGAATATCCTAGGCACAGTGTTGATTACTCTGAGCTTCCGAGGAAGAGTACTGATAAGAGAGAAAAATCAAGGAGAAGCACCGATAGACGACCTGAAAAGCTGAGACTTAATGATTACAAGTTAAATAACAGTGACAAGCTAGAGAAATTTAGGATCTCTGTTGATCAGATAGAGAGGTCCCGAAGGAGCGTCGAATACCACCATGAGAGATCATCTAGGAGAAGCGTTGACCATCAGCTAGAAAAACCAAGGAGAAGTGTCGACTGGCTGGACAGAATTCGAGCTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

283

Amino Acids

33.15

Weight (kDa)

9.31

Isoelectric Point (pI)

71.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 3 - 76 5.4e-06 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 110
AccI GTMKAC 1 cut(s) 822
AciI CCGC 1 cut(s) 420
AclWI GGATC 1 cut(s) 722
AcsI RAATTY 2 cut(s) 707, 837
AfaI GTAC 1 cut(s) 610
AflIII ACRYGT 1 cut(s) 335
AgsI TTSAA 4 cut(s) 77, 491, 519, 563
AjnI CCWGG 1 cut(s) 5
AluBI AGCT 6 cut(s) 80, 595, 661, 700, 799, 845
AluI AGCT 6 cut(s) 80, 595, 661, 700, 799, 845
Alw21I GWGCWC 1 cut(s) 530
Alw26I GTCTC 2 cut(s) 98, 658
AlwI GGATC 1 cut(s) 722
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 2 cut(s) 80, 176
ApoI RAATTY 2 cut(s) 707, 837
AspA2I CCTAGG 2 cut(s) 548, 569
AspLEI GCGC 2 cut(s) 258, 499
AspS9I GGNCC 2 cut(s) 158, 738
AsuHPI GGTGA 1 cut(s) 316
AvaII GGWCC 1 cut(s) 738
AvrII CCTAGG 2 cut(s) 548, 569
BanI GGYRCC 1 cut(s) 110
BarI GAAGNNNNNNTAC 2 cut(s) 145, 177
Bbv12I GWGCWC 1 cut(s) 530
BbvI GCAGC 2 cut(s) 67, 163
BccI CCATC 1 cut(s) 801
BceAI ACGGC 1 cut(s) 379
BciT130I CCWGG 1 cut(s) 7
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 2 cut(s) 98, 658
BfaI CTAG 5 cut(s) 549, 570, 701, 777, 800
BfoI RGCGCY 1 cut(s) 500
BisI GCNGC 2 cut(s) 81, 177
BlnI CCTAGG 2 cut(s) 548, 569
BlsI GCNGC 2 cut(s) 82, 178
BmcAI AGTACT 1 cut(s) 610
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 738
BmgT120I GGNCC 2 cut(s) 158, 738
BmiI GGNNCC 2 cut(s) 112, 740
BmrFI CCNGG 1 cut(s) 7
BsaJI CCNNGG 4 cut(s) 548, 569, 599, 809
Bse1I ACTGG 2 cut(s) 306, 830
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 4 cut(s) 548, 569, 599, 809
BseMII CTCAG 3 cut(s) 185, 582, 653
BseNI ACTGG 2 cut(s) 306, 830
BseXI GCAGC 2 cut(s) 67, 163
BseYI CCCAGC 1 cut(s) 845
BshFI GGCC 1 cut(s) 159
BshNI GGYRCC 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 530
BslFI GGGAC 1 cut(s) 724
BsmAI GTCTC 2 cut(s) 98, 658
BsmFI GGGAC 1 cut(s) 724
BsnI GGCC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 530
Bsp143I GATC 4 cut(s) 169, 714, 724, 770
BspACI CCGC 1 cut(s) 420
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 3 cut(s) 186, 583, 654
BspLI GGNNCC 2 cut(s) 112, 740
BspPI GGATC 1 cut(s) 722
BspQI GCTCTTC 1 cut(s) 518
BspT107I GGYRCC 1 cut(s) 110
BsrI ACTGG 2 cut(s) 306, 830
BssECI CCNNGG 4 cut(s) 548, 569, 599, 809
BssMI GATC 4 cut(s) 169, 714, 724, 770
BssT1I CCWWGG 3 cut(s) 548, 569, 809
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 5 cut(s) 166, 384, 536, 578, 692
Bst6I CTCTTC 3 cut(s) 93, 518, 599
BstC8I GCNNGC 2 cut(s) 44, 368
BstDEI CTNAG 3 cut(s) 194, 591, 662
BstH2I RGCGCY 1 cut(s) 500
BstHHI GCGC 2 cut(s) 258, 499
BstKTI GATC 4 cut(s) 172, 717, 727, 773
BstMAI GTCTC 2 cut(s) 98, 658
BstMBI GATC 4 cut(s) 169, 714, 724, 770
BstMWI GCNNNNNNNGC 2 cut(s) 363, 376
BstNI CCWGG 1 cut(s) 7
BstNSI RCATGY 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 5
BstV1I GCAGC 2 cut(s) 67, 163
BstX2I RGATCY 1 cut(s) 714
BstYI RGATCY 1 cut(s) 714
BsuRI GGCC 1 cut(s) 159
BtsI GCAGTG 1 cut(s) 427
BtsIMutI CAGTG 4 cut(s) 299, 427, 583, 697
Cac8I GCNNGC 2 cut(s) 44, 368
CfoI GCGC 2 cut(s) 258, 499
Cfr13I GGNCC 2 cut(s) 158, 738
CseI GACGC 1 cut(s) 739
Csp6I GTAC 1 cut(s) 609
CspCI CAANNNNNGTGG 2 cut(s) 492, 527
CviAII CATG 3 cut(s) 329, 336, 764
CviQI GTAC 1 cut(s) 609
DdeI CTNAG 3 cut(s) 194, 591, 662
DpnI GATC 4 cut(s) 171, 716, 726, 772
DpnII GATC 4 cut(s) 169, 714, 724, 770
Eam1104I CTCTTC 3 cut(s) 93, 518, 599
EarI CTCTTC 3 cut(s) 93, 518, 599
EciI GGCGGA 1 cut(s) 435
Eco130I CCWWGG 3 cut(s) 548, 569, 809
Eco32I GATATC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 738
EcoO109I RGGNCCY 1 cut(s) 738
EcoRI GAATTC 1 cut(s) 837
EcoRII CCWGG 1 cut(s) 5
EcoRV GATATC 1 cut(s) 274
EcoT14I CCWWGG 3 cut(s) 548, 569, 809
ErhI CCWWGG 3 cut(s) 548, 569, 809
FaeI CATG 3 cut(s) 332, 339, 767
FaqI GGGAC 1 cut(s) 724
FatI CATG 3 cut(s) 328, 335, 763
FbaI TGATCA 1 cut(s) 724
FblI GTMKAC 1 cut(s) 822
Fnu4HI GCNGC 2 cut(s) 81, 177
Fsp4HI GCNGC 2 cut(s) 81, 177
FspBI CTAG 5 cut(s) 549, 570, 701, 777, 800
GlaI GCGC 2 cut(s) 257, 498
GluI GCNGC 2 cut(s) 81, 177
GsaI CCCAGC 1 cut(s) 849
HaeII RGCGCY 1 cut(s) 500
HaeIII GGCC 1 cut(s) 159
HgaI GACGC 1 cut(s) 739
HhaI GCGC 2 cut(s) 258, 499
Hin1II CATG 3 cut(s) 332, 339, 767
Hin6I GCGC 2 cut(s) 256, 497
HinP1I GCGC 2 cut(s) 256, 497
HincII GTYRAC 3 cut(s) 352, 790, 823
HindII GTYRAC 3 cut(s) 352, 790, 823
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 4 cut(s) 53, 352, 790, 823
Hpy188I TCNGA 5 cut(s) 152, 219, 592, 600, 729
Hpy188III TCNNGA 4 cut(s) 21, 95, 449, 741
Hpy8I GTNNAC 4 cut(s) 53, 352, 790, 823
Hpy99I CGWCG 1 cut(s) 755
HpyAV CCTTC 1 cut(s) 738
HpyCH4III ACNGT 5 cut(s) 166, 384, 536, 578, 692
HpyCH4V TGCA 4 cut(s) 68, 83, 211, 432
HpyF10VI GCNNNNNNNGC 2 cut(s) 363, 376
HpyF3I CTNAG 3 cut(s) 194, 591, 662
Hsp92II CATG 3 cut(s) 332, 339, 767
HspAI GCGC 2 cut(s) 256, 497
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 4 cut(s) 169, 714, 724, 770
LguI GCTCTTC 1 cut(s) 518
LmnI GCTCC 1 cut(s) 747
Lsp1109I GCAGC 2 cut(s) 67, 163
MaeI CTAG 5 cut(s) 549, 570, 701, 777, 800
MaeIII GTNAC 1 cut(s) 692
MalI GATC 4 cut(s) 171, 716, 726, 772
MboI GATC 4 cut(s) 169, 714, 724, 770
MboII GAAGA 3 cut(s) 110, 535, 616
MfeI CAATTG 1 cut(s) 201
MflI RGATCY 1 cut(s) 714
MhlI GDGCHC 1 cut(s) 530
MluCI AATT 4 cut(s) 201, 433, 707, 837
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 8 cut(s) 96, 115, 143, 198, 414, 510, 594, 729
MseI TTAA 3 cut(s) 233, 669, 683
MslI CAYNNNNRTG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 7
MunI CAATTG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 363, 376
NdeII GATC 4 cut(s) 169, 714, 724, 770
NlaIII CATG 3 cut(s) 332, 339, 767
NlaIV GGNNCC 2 cut(s) 112, 740
NmuCI GTSAC 1 cut(s) 692
NspI RCATGY 1 cut(s) 339
PciI ACATGT 1 cut(s) 335
PciSI GCTCTTC 1 cut(s) 518
PflFI GACNNNGTC 1 cut(s) 536
PkrI GCNGC 2 cut(s) 82, 178
PpuMI RGGWCCY 1 cut(s) 738
PscI ACATGT 1 cut(s) 335
Psp5II RGGWCCY 1 cut(s) 738
Psp6I CCWGG 1 cut(s) 5
PspFI CCCAGC 1 cut(s) 845
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 2 cut(s) 112, 740
PspPI GGNCC 2 cut(s) 158, 738
PspPPI RGGWCCY 1 cut(s) 738
PsuI RGATCY 1 cut(s) 714
PsyI GACNNNGTC 1 cut(s) 536
RsaI GTAC 1 cut(s) 610
RsaNI GTAC 1 cut(s) 609
RseI CAYNNNNRTG 1 cut(s) 88
SalI GTCGAC 1 cut(s) 821
SapI GCTCTTC 1 cut(s) 518
SaqAI TTAA 3 cut(s) 233, 669, 683
SatI GCNGC 2 cut(s) 81, 177
Sau3AI GATC 4 cut(s) 169, 714, 724, 770
Sau96I GGNCC 2 cut(s) 158, 738
ScaI AGTACT 1 cut(s) 610
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 1 cut(s) 530
SinI GGWCC 1 cut(s) 738
SmiMI CAYNNNNRTG 1 cut(s) 88
Sse9I AATT 4 cut(s) 201, 433, 707, 837
SsiI CCGC 1 cut(s) 420
SspMI CTAG 5 cut(s) 549, 570, 701, 777, 800
StyD4I CCNGG 1 cut(s) 5
StyI CCWWGG 3 cut(s) 548, 569, 809
TaaI ACNGT 5 cut(s) 166, 384, 536, 578, 692
TaqI TCGA 5 cut(s) 96, 540, 753, 822, 841
TasI AATT 4 cut(s) 201, 433, 707, 837
TatI WGTACW 1 cut(s) 608
Tru1I TTAA 3 cut(s) 233, 669, 683
Tru9I TTAA 3 cut(s) 233, 669, 683
TscAI CASTG 4 cut(s) 306, 434, 583, 697
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 2 cut(s) 80, 176
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 2 cut(s) 357, 466
TspRI CASTG 4 cut(s) 306, 434, 583, 697
Tth111I GACNNNGTC 1 cut(s) 536
VpaK11BI GGWCC 1 cut(s) 738
XapI RAATTY 2 cut(s) 707, 837
XceI RCATGY 1 cut(s) 339
XmaJI CCTAGG 2 cut(s) 548, 569
XmiI GTMKAC 1 cut(s) 822
XspI CTAG 5 cut(s) 549, 570, 701, 777, 800
ZrmI AGTACT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.