Autophagy protein 16 (ATG16)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G50230 |
| fragaria_vesca | FvH4_5g06790 FvH4_5g06790 |
| malus_domestica | MD06G1161200.v1.1 MD14G1166400.v1.1 |
| prunus_persica | Prupe.5G160700_v2.0.a1 Prupe.5G160700_v2.0.a1 |
| pyrus_communis | pycom06g14390 pycom14g13900 |
| rosa_chinensis | RchiOBHm_Chr7g0191761 RchiOBHm_Chr7g0191771 |
| rosa_laevigata | RLG00000004427 |
| rosa_multiflora | Rmu_co8375695.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00263550 |
| rosa_rugosa | Rorug06G0511200 |
| rosa_samantha | Rh7AG121000 Rh7BG122700 Rh7CG125600 Rh7DG124300 |
| rosa_wichuraiana | Rw7G010300 Rw7G010310 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 403 |
| AccBSI | CCGCTC | 2 cut(s) | 373, 1308 |
| AccII | CGCG | 1 cut(s) | 34 |
| AclWI | GGATC | 3 cut(s) | 490, 503, 1216 |
| AcoI | YGGCCR | 1 cut(s) | 754 |
| AcsI | RAATTY | 1 cut(s) | 791 |
| AcuI | CTGAAG | 2 cut(s) | 107, 1289 |
| AcvI | CACGTG | 1 cut(s) | 760 |
| AfaI | GTAC | 5 cut(s) | 455, 539, 832, 1123, 1357 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 340 |
| AgsI | TTSAA | 3 cut(s) | 81, 95, 1014 |
| AjiI | CACGTC | 1 cut(s) | 1365 |
| AjnI | CCWGG | 1 cut(s) | 713 |
| Alw21I | GWGCWC | 3 cut(s) | 235, 1265, 1278 |
| Alw26I | GTCTC | 3 cut(s) | 266, 1068, 1110 |
| AlwI | GGATC | 3 cut(s) | 490, 503, 1216 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 116 |
| Ama87I | CYCGRG | 1 cut(s) | 1041 |
| AoxI | GGCC | 3 cut(s) | 381, 754, 940 |
| ApeKI | GCWGC | 7 cut(s) | 10, 409, 686, 693, 818, 1004, 1202 |
| ApoI | RAATTY | 1 cut(s) | 791 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 590, 622 |
| AspS9I | GGNCC | 3 cut(s) | 381, 576, 649 |
| AvaI | CYCGRG | 1 cut(s) | 1041 |
| AvaII | GGWCC | 2 cut(s) | 576, 649 |
| BalI | TGGCCA | 1 cut(s) | 756 |
| BamHI | GGATCC | 1 cut(s) | 495 |
| BauI | CACGAG | 1 cut(s) | 50 |
| BbrPI | CACGTG | 1 cut(s) | 760 |
| Bbv12I | GWGCWC | 3 cut(s) | 235, 1265, 1278 |
| BbvI | GCAGC | 7 cut(s) | 22, 421, 698, 705, 830, 991, 1189 |
| BccI | CCATC | 5 cut(s) | 413, 566, 914, 944, 1040 |
| BceAI | ACGGC | 1 cut(s) | 1104 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 329, 363 |
| BciT130I | CCWGG | 1 cut(s) | 715 |
| BciVI | GTATCC | 1 cut(s) | 586 |
| BcoDI | GTCTC | 3 cut(s) | 266, 1068, 1110 |
| BfaI | CTAG | 4 cut(s) | 239, 261, 405, 1325 |
| BfmI | CTRYAG | 2 cut(s) | 8, 777 |
| BfuAI | ACCTGC | 1 cut(s) | 403 |
| BfuI | GTATCC | 1 cut(s) | 586 |
| BmcAI | AGTACT | 1 cut(s) | 455 |
| Bme1390I | CCNGG | 1 cut(s) | 715 |
| Bme18I | GGWCC | 2 cut(s) | 576, 649 |
| BmeT110I | CYCGRG | 1 cut(s) | 1041 |
| BmgBI | CACGTC | 1 cut(s) | 1365 |
| BmgT120I | GGNCC | 3 cut(s) | 381, 576, 649 |
| BmiI | GGNNCC | 3 cut(s) | 497, 577, 1163 |
| BmrFI | CCNGG | 1 cut(s) | 715 |
| BmsI | GCATC | 3 cut(s) | 313, 530, 1292 |
| Bpu10I | CCTNAGC | 2 cut(s) | 377, 727 |
| BpuEI | CTTGAG | 1 cut(s) | 781 |
| Bsa29I | ATCGAT | 1 cut(s) | 1169 |
| BsaAI | YACGTR | 1 cut(s) | 760 |
| BsaBI | GATNNNNATC | 2 cut(s) | 954, 1175 |
| BsaI | GGTCTC | 1 cut(s) | 1110 |
| BsaJI | CCNNGG | 1 cut(s) | 714 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 340 |
| Bse1I | ACTGG | 5 cut(s) | 384, 565, 757, 1065, 1141 |
| Bse3DI | GCAATG | 3 cut(s) | 681, 904, 1057 |
| Bse8I | GATNNNNATC | 2 cut(s) | 954, 1175 |
| BseBI | CCWGG | 1 cut(s) | 715 |
| BseCI | ATCGAT | 1 cut(s) | 1169 |
| BseDI | CCNNGG | 1 cut(s) | 714 |
| BseGI | GGATG | 7 cut(s) | 154, 309, 328, 521, 577, 724, 925 |
| BseJI | GATNNNNATC | 2 cut(s) | 954, 1175 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 340 |
| BseMI | GCAATG | 3 cut(s) | 681, 904, 1057 |
| BseMII | CTCAG | 6 cut(s) | 173, 261, 391, 441, 741, 1006 |
| BseNI | ACTGG | 5 cut(s) | 384, 565, 757, 1065, 1141 |
| BseXI | GCAGC | 7 cut(s) | 22, 421, 698, 705, 830, 991, 1189 |
| BsgI | GTGCAG | 4 cut(s) | 91, 837, 850, 990 |
| Bsh1236I | CGCG | 1 cut(s) | 34 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1169 |
| BshFI | GGCC | 3 cut(s) | 383, 756, 942 |
| BshVI | ATCGAT | 1 cut(s) | 1169 |
| BsiEI | CGRYCG | 1 cut(s) | 1169 |
| BsiHKAI | GWGCWC | 3 cut(s) | 235, 1265, 1278 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1041 |
| BslFI | GGGAC | 1 cut(s) | 1024 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 340 |
| BsmAI | GTCTC | 3 cut(s) | 266, 1068, 1110 |
| BsmFI | GGGAC | 1 cut(s) | 1024 |
| BsmI | GAATGC | 2 cut(s) | 158, 1252 |
| BsnI | GGCC | 3 cut(s) | 383, 756, 942 |
| Bso31I | GGTCTC | 1 cut(s) | 1110 |
| BsoBI | CYCGRG | 1 cut(s) | 1041 |
| Bsp1286I | GDGCHC | 3 cut(s) | 235, 1265, 1278 |
| Bsp143I | GATC | 6 cut(s) | 118, 495, 826, 1166, 1170, 1208 |
| BspANI | GGCC | 3 cut(s) | 383, 756, 942 |
| BspCNI | CTCAG | 6 cut(s) | 172, 262, 390, 442, 740, 1005 |
| BspDI | ATCGAT | 1 cut(s) | 1169 |
| BspFNI | CGCG | 1 cut(s) | 34 |
| BspLI | GGNNCC | 3 cut(s) | 497, 577, 1163 |
| BspMAI | CTGCAG | 1 cut(s) | 12 |
| BspMI | ACCTGC | 1 cut(s) | 403 |
| BspPI | GGATC | 3 cut(s) | 490, 503, 1216 |
| BspTNI | GGTCTC | 1 cut(s) | 1110 |
| BsrBI | CCGCTC | 2 cut(s) | 373, 1308 |
| BsrDI | GCAATG | 3 cut(s) | 681, 904, 1057 |
| BsrI | ACTGG | 5 cut(s) | 384, 565, 757, 1065, 1141 |
| BssECI | CCNNGG | 1 cut(s) | 714 |
| BssMI | GATC | 6 cut(s) | 118, 495, 826, 1166, 1170, 1208 |
| BssSI | CACGAG | 1 cut(s) | 50 |
| Bst2BI | CACGAG | 1 cut(s) | 50 |
| Bst2UI | CCWGG | 1 cut(s) | 715 |
| Bst4CI | ACNGT | 2 cut(s) | 629, 1220 |
| Bst6I | CTCTTC | 1 cut(s) | 174 |
| BstBAI | YACGTR | 1 cut(s) | 760 |
| BstC8I | GCNNGC | 3 cut(s) | 484, 691, 1310 |
| BstDEI | CTNAG | 6 cut(s) | 159, 270, 377, 450, 727, 992 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 338 |
| BstF5I | GGATG | 7 cut(s) | 154, 309, 328, 521, 577, 724, 925 |
| BstFNI | CGCG | 1 cut(s) | 34 |
| BstKTI | GATC | 6 cut(s) | 121, 498, 829, 1169, 1173, 1211 |
| BstMAI | GTCTC | 3 cut(s) | 266, 1068, 1110 |
| BstMBI | GATC | 6 cut(s) | 118, 495, 826, 1166, 1170, 1208 |
| BstMCI | CGRYCG | 1 cut(s) | 1169 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 83, 113, 266, 1211 |
| BstNI | CCWGG | 1 cut(s) | 715 |
| BstNSI | RCATGY | 1 cut(s) | 486 |
| BstSCI | CCNGG | 1 cut(s) | 713 |
| BstSFI | CTRYAG | 2 cut(s) | 8, 777 |
| BstUI | CGCG | 1 cut(s) | 34 |
| BstV1I | GCAGC | 7 cut(s) | 22, 421, 698, 705, 830, 991, 1189 |
| BstX2I | RGATCY | 2 cut(s) | 495, 1208 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 950 |
| BstYI | RGATCY | 2 cut(s) | 495, 1208 |
| Bsu15I | ATCGAT | 1 cut(s) | 1169 |
| BsuI | GTATCC | 1 cut(s) | 586 |
| BsuRI | GGCC | 3 cut(s) | 383, 756, 942 |
| BsuTUI | ATCGAT | 1 cut(s) | 1169 |
| BtrI | CACGTC | 1 cut(s) | 1365 |
| BtsCI | GGATG | 7 cut(s) | 154, 309, 328, 521, 577, 724, 925 |
| BtsI | GCAGTG | 3 cut(s) | 20, 117, 1278 |
| BtsIMutI | CAGTG | 8 cut(s) | 20, 117, 391, 750, 1000, 1072, 1134, 1278 |
| BveI | ACCTGC | 1 cut(s) | 403 |
| Cac8I | GCNNGC | 3 cut(s) | 484, 691, 1310 |
| CaiI | CAGNNNCTG | 1 cut(s) | 116 |
| Cfr13I | GGNCC | 3 cut(s) | 381, 576, 649 |
| ClaI | ATCGAT | 1 cut(s) | 1169 |
| CseI | GACGC | 1 cut(s) | 1140 |
| Csp6I | GTAC | 5 cut(s) | 454, 538, 831, 1122, 1356 |
| CviAII | CATG | 9 cut(s) | 483, 506, 665, 806, 880, 916, 944, 1302, 1313 |
| CviQI | GTAC | 5 cut(s) | 454, 538, 831, 1122, 1356 |
| DdeI | CTNAG | 6 cut(s) | 159, 270, 377, 450, 727, 992 |
| DpnI | GATC | 6 cut(s) | 120, 497, 828, 1168, 1172, 1210 |
| DpnII | GATC | 6 cut(s) | 118, 495, 826, 1166, 1170, 1208 |
| EaeI | YGGCCR | 1 cut(s) | 754 |
| Eam1104I | CTCTTC | 1 cut(s) | 174 |
| EarI | CTCTTC | 1 cut(s) | 174 |
| EciI | GGCGGA | 2 cut(s) | 419, 1106 |
| Eco31I | GGTCTC | 1 cut(s) | 1110 |
| Eco47I | GGWCC | 2 cut(s) | 576, 649 |
| Eco57I | CTGAAG | 2 cut(s) | 107, 1289 |
| Eco72I | CACGTG | 1 cut(s) | 760 |
| Eco88I | CYCGRG | 1 cut(s) | 1041 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 338 |
| EcoRII | CCWGG | 1 cut(s) | 713 |
| FaeI | CATG | 9 cut(s) | 486, 509, 668, 809, 883, 919, 947, 1305, 1316 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 75, 107 |
| FaqI | GGGAC | 1 cut(s) | 1024 |
| FatI | CATG | 9 cut(s) | 482, 505, 664, 805, 879, 915, 943, 1301, 1312 |
| FauI | CCCGC | 1 cut(s) | 1301 |
| FauNDI | CATATG | 1 cut(s) | 932 |
| FokI | GGATG | 7 cut(s) | 161, 316, 335, 508, 584, 731, 932 |
| FspBI | CTAG | 4 cut(s) | 239, 261, 405, 1325 |
| HaeIII | GGCC | 3 cut(s) | 383, 756, 942 |
| HgaI | GACGC | 1 cut(s) | 1140 |
| Hin1II | CATG | 9 cut(s) | 486, 509, 668, 809, 883, 919, 947, 1305, 1316 |
| HincII | GTYRAC | 2 cut(s) | 135, 468 |
| HindII | GTYRAC | 2 cut(s) | 135, 468 |
| HindIII | AAGCTT | 2 cut(s) | 84, 192 |
| HinfI | GANTC | 2 cut(s) | 464, 1347 |
| HpaI | GTTAAC | 1 cut(s) | 135 |
| Hpy166II | GTNNAC | 3 cut(s) | 135, 468, 566 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 126, 1269 |
| Hpy188III | TCNNGA | 6 cut(s) | 95, 647, 655, 1041, 1109, 1184 |
| Hpy8I | GTNNAC | 3 cut(s) | 135, 468, 566 |
| Hpy99I | CGWCG | 1 cut(s) | 1156 |
| HpyAV | CCTTC | 5 cut(s) | 121, 313, 437, 503, 1264 |
| HpyCH4III | ACNGT | 2 cut(s) | 629, 1220 |
| HpyCH4IV | ACGT | 3 cut(s) | 759, 1197, 1364 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 83, 113, 266, 1211 |
| HpyF3I | CTNAG | 6 cut(s) | 159, 270, 377, 450, 727, 992 |
| HpySE526I | ACGT | 3 cut(s) | 759, 1197, 1364 |
| Hsp92II | CATG | 9 cut(s) | 486, 509, 668, 809, 883, 919, 947, 1305, 1316 |
| KspAI | GTTAAC | 1 cut(s) | 135 |
| Kzo9I | GATC | 6 cut(s) | 118, 495, 826, 1166, 1170, 1208 |
| LmnI | GCTCC | 3 cut(s) | 1161, 1273, 1305 |
| Lsp1109I | GCAGC | 7 cut(s) | 22, 421, 698, 705, 830, 991, 1189 |
| LweI | GCATC | 3 cut(s) | 313, 530, 1292 |
| MaeI | CTAG | 4 cut(s) | 239, 261, 405, 1325 |
| MaeII | ACGT | 3 cut(s) | 759, 1197, 1364 |
| MaeIII | GTNAC | 4 cut(s) | 17, 606, 860, 1021 |
| MalI | GATC | 6 cut(s) | 120, 497, 828, 1168, 1172, 1210 |
| MbiI | CCGCTC | 2 cut(s) | 373, 1308 |
| MboI | GATC | 6 cut(s) | 118, 495, 826, 1166, 1170, 1208 |
| MboII | GAAGA | 6 cut(s) | 113, 191, 196, 371, 452, 950 |
| MflI | RGATCY | 2 cut(s) | 495, 1208 |
| MhlI | GDGCHC | 3 cut(s) | 235, 1265, 1278 |
| MlsI | TGGCCA | 1 cut(s) | 756 |
| MluCI | AATT | 9 cut(s) | 200, 291, 541, 704, 791, 892, 1087, 1156, 1192 |
| MluNI | TGGCCA | 1 cut(s) | 756 |
| MlyI | GAGTC | 1 cut(s) | 473 |
| MmeI | TCCRAC | 1 cut(s) | 288 |
| MnlI | CCTC | 6 cut(s) | 334, 487, 506, 662, 726, 1332 |
| Mox20I | TGGCCA | 1 cut(s) | 756 |
| MscI | TGGCCA | 1 cut(s) | 756 |
| MseI | TTAA | 6 cut(s) | 134, 189, 290, 336, 582, 1127 |
| MslI | CAYNNNNRTG | 3 cut(s) | 584, 948, 1014 |
| Msp20I | TGGCCA | 1 cut(s) | 756 |
| MspA1I | CMGCKG | 1 cut(s) | 300 |
| MspR9I | CCNGG | 1 cut(s) | 715 |
| Mva1269I | GAATGC | 2 cut(s) | 158, 1252 |
| MvaI | CCWGG | 1 cut(s) | 715 |
| MvnI | CGCG | 1 cut(s) | 34 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 83, 113, 266, 1211 |
| NdeI | CATATG | 1 cut(s) | 932 |
| NdeII | GATC | 6 cut(s) | 118, 495, 826, 1166, 1170, 1208 |
| NlaIII | CATG | 9 cut(s) | 486, 509, 668, 809, 883, 919, 947, 1305, 1316 |
| NlaIV | GGNNCC | 3 cut(s) | 497, 577, 1163 |
| NmuCI | GTSAC | 2 cut(s) | 606, 1021 |
| NspI | RCATGY | 1 cut(s) | 486 |
| PaeI | GCATGC | 1 cut(s) | 486 |
| PctI | GAATGC | 2 cut(s) | 158, 1252 |
| PfeI | GAWTC | 1 cut(s) | 1347 |
| Ple19I | CGATCG | 1 cut(s) | 1169 |
| PleI | GAGTC | 1 cut(s) | 472 |
| PmaCI | CACGTG | 1 cut(s) | 760 |
| PmlI | CACGTG | 1 cut(s) | 760 |
| PpsI | GAGTC | 1 cut(s) | 472 |
| Ppu21I | YACGTR | 1 cut(s) | 760 |
| Psp6I | CCWGG | 1 cut(s) | 713 |
| PspCI | CACGTG | 1 cut(s) | 760 |
| PspGI | CCWGG | 1 cut(s) | 713 |
| PspN4I | GGNNCC | 3 cut(s) | 497, 577, 1163 |
| PspPI | GGNCC | 3 cut(s) | 381, 576, 649 |
| PstI | CTGCAG | 1 cut(s) | 12 |
| PstNI | CAGNNNCTG | 1 cut(s) | 116 |
| PsuI | RGATCY | 2 cut(s) | 495, 1208 |
| PvuI | CGATCG | 1 cut(s) | 1169 |
| RsaI | GTAC | 5 cut(s) | 455, 539, 832, 1123, 1357 |
| RsaNI | GTAC | 5 cut(s) | 454, 538, 831, 1122, 1356 |
| RseI | CAYNNNNRTG | 3 cut(s) | 584, 948, 1014 |
| SaqAI | TTAA | 6 cut(s) | 134, 189, 290, 336, 582, 1127 |
| Sau3AI | GATC | 6 cut(s) | 118, 495, 826, 1166, 1170, 1208 |
| Sau96I | GGNCC | 3 cut(s) | 381, 576, 649 |
| ScaI | AGTACT | 1 cut(s) | 455 |
| SchI | GAGTC | 1 cut(s) | 473 |
| ScrFI | CCNGG | 1 cut(s) | 715 |
| SduI | GDGCHC | 3 cut(s) | 235, 1265, 1278 |
| SfaNI | GCATC | 3 cut(s) | 313, 530, 1292 |
| SfcI | CTRYAG | 2 cut(s) | 8, 777 |
| SinI | GGWCC | 2 cut(s) | 576, 649 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 584, 948, 1014 |
| SmlI | CTYRAG | 1 cut(s) | 796 |
| SmoI | CTYRAG | 1 cut(s) | 796 |
| SphI | GCATGC | 1 cut(s) | 486 |
| Sse9I | AATT | 9 cut(s) | 200, 291, 541, 704, 791, 892, 1087, 1156, 1192 |
| SspMI | CTAG | 4 cut(s) | 239, 261, 405, 1325 |
| StyD4I | CCNGG | 1 cut(s) | 713 |
| TaaI | ACNGT | 2 cut(s) | 629, 1220 |
| TaiI | ACGT | 3 cut(s) | 762, 1200, 1367 |
| TaqI | TCGA | 3 cut(s) | 1154, 1169, 1244 |
| TasI | AATT | 9 cut(s) | 200, 291, 541, 704, 791, 892, 1087, 1156, 1192 |
| TatI | WGTACW | 3 cut(s) | 453, 537, 1355 |
| TauI | GCSGC | 3 cut(s) | 110, 170, 376 |
| TfiI | GAWTC | 1 cut(s) | 1347 |
| Tru1I | TTAA | 6 cut(s) | 134, 189, 290, 336, 582, 1127 |
| Tru9I | TTAA | 6 cut(s) | 134, 189, 290, 336, 582, 1127 |
| TscAI | CASTG | 8 cut(s) | 20, 117, 391, 757, 1000, 1072, 1141, 1285 |
| TseFI | GTSAC | 2 cut(s) | 606, 1021 |
| TseI | GCWGC | 7 cut(s) | 10, 409, 686, 693, 818, 1004, 1202 |
| Tsp45I | GTSAC | 2 cut(s) | 606, 1021 |
| TspDTI | ATGAA | 5 cut(s) | 165, 332, 372, 522, 1290 |
| TspGWI | ACGGA | 1 cut(s) | 1359 |
| TspRI | CASTG | 8 cut(s) | 20, 117, 391, 757, 1000, 1072, 1141, 1285 |
| VpaK11BI | GGWCC | 2 cut(s) | 576, 649 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 338 |
| XapI | RAATTY | 1 cut(s) | 791 |
| XceI | RCATGY | 1 cut(s) | 486 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 749 |
| XspI | CTAG | 4 cut(s) | 239, 261, 405, 1325 |
| ZrmI | AGTACT | 1 cut(s) | 455 |