pycom06g14390

Autophagy protein 16 (ATG16)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
19136028 .. 19137983
1956 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g14390.3

Sequence Viewer

Length: 1368 bp
ATGGAACTGCAGCAGTGTTACAAAGCTCAATCGCGGTTGTCCGAGCAACTCGTGGTGGAAGTAGCAGAGTGCAGAGCTTCAAAAGCTTCACTTCAAGAGAAAGAAGCGGCAGTGGCTGATCTTCAGAAGGAGTTAACTGAAAAAAGGGATGAATGCTCTCAGTTAGCGGCTGACTTGGAAGAGAAGATTAAAGCTTTAGAATTGGTTGTGAATGAGAACAAGGAAATAAGAGCACAGCTAGAAGCAATCTCTATTAGAGCTAGGAACGCTGAGACTGAAAGTAAGGTGTTAATTGACCGCTGGATGTTGGAAAAGATGAAGGATGCAGAACGCCTTAACGAGGCAAATGCACTCTATGAAGATATGATTGAGCGGCTCAGGGCCAGTGGTTTAGAAAAACTTGCTAGGCAGCAGGTAGATGGTGTTGTCCGCCAAAGTGAAGAAGGTGCTGAGTACTATGTGGAGTCAACCATTCCCTCTGCATGCAAGAATAGGATCCCTGCCCATGAAGGAGGTTGTGCATCCATATTATTTGAGTACAATTCTGGCAGATTGATTACTGGTGGACAGGATGGGTCCATTAAAATGTGGGATACAAATAATGGGTCACTAACTCATACACTTCACGGTTGCATTGGTTCTGTTCTGGACCTCACGATTACCCATGACAATAAATCTATCATTGCAGCAAGCAGCTCAAACAAATTGTATGCCTGGGATGTTAGCTCAGGGAGGGTTCGCCACACGCTCACTGGCCACGTGGATAAAGTGTGTGCTGTAGATGTCAGCAAATTCTCAAGTCGTCATGTTGTGAGTGCAGCTTATGATCGTACCATAAAAGTTTGGGATTTGCAGAAAGGTTACTGCACCAATACAATCATGCACCCAAAAAATTGCAATGCTTTGTCATTTAGCATGGATGGACAGACCATATGTTCAGGCCATGTTGATGGAAATCTTCGTTTGTGGGATATTGAGAAAGGAAAGCTACTCAGTGAAGTAGCTGCACATTCAAATGCTGTGACATCTATATCTTTGTCCCGAGATGGCAATGTTATACTGACCAGTGGGAGAGACAATGTGCATAATTTGTTTGATATGCGGTCTCTGGAAGTCCGCCGTACATTAAGAGCCACTGGAAACAGAGTAGCGTCGAATTGGAGCCGATCGATCTCTATCAGTCCAGATGACAATTACGTTGCTGCTGGATCTGCTGACGGTTCTGTGTATATTTGGTCAATATCGAATGCTGACATTGTGAGCACTCTGAAGGAGCACACTGCATCTGTCCTGTGTTGTTCATGGAGCGGGCATGGAAAACCTCTAGCTTCTGCGGACAAGAACGGAATCATCTGTACTTGGACGTGA

Protein Analysis

456

Amino Acids

50.09

Weight (kDa)

6.04

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 403
AccBSI CCGCTC 2 cut(s) 373, 1308
AccII CGCG 1 cut(s) 34
AclWI GGATC 3 cut(s) 490, 503, 1216
AcoI YGGCCR 1 cut(s) 754
AcsI RAATTY 1 cut(s) 791
AcuI CTGAAG 2 cut(s) 107, 1289
AcvI CACGTG 1 cut(s) 760
AfaI GTAC 5 cut(s) 455, 539, 832, 1123, 1357
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 3 cut(s) 81, 95, 1014
AjiI CACGTC 1 cut(s) 1365
AjnI CCWGG 1 cut(s) 713
Alw21I GWGCWC 3 cut(s) 235, 1265, 1278
Alw26I GTCTC 3 cut(s) 266, 1068, 1110
AlwI GGATC 3 cut(s) 490, 503, 1216
AlwNI CAGNNNCTG 1 cut(s) 116
Ama87I CYCGRG 1 cut(s) 1041
AoxI GGCC 3 cut(s) 381, 754, 940
ApeKI GCWGC 7 cut(s) 10, 409, 686, 693, 818, 1004, 1202
ApoI RAATTY 1 cut(s) 791
ArsI GACNNNNNNTTYG 2 cut(s) 590, 622
AspS9I GGNCC 3 cut(s) 381, 576, 649
AvaI CYCGRG 1 cut(s) 1041
AvaII GGWCC 2 cut(s) 576, 649
BalI TGGCCA 1 cut(s) 756
BamHI GGATCC 1 cut(s) 495
BauI CACGAG 1 cut(s) 50
BbrPI CACGTG 1 cut(s) 760
Bbv12I GWGCWC 3 cut(s) 235, 1265, 1278
BbvI GCAGC 7 cut(s) 22, 421, 698, 705, 830, 991, 1189
BccI CCATC 5 cut(s) 413, 566, 914, 944, 1040
BceAI ACGGC 1 cut(s) 1104
BcgI CGANNNNNNTGC 2 cut(s) 329, 363
BciT130I CCWGG 1 cut(s) 715
BciVI GTATCC 1 cut(s) 586
BcoDI GTCTC 3 cut(s) 266, 1068, 1110
BfaI CTAG 4 cut(s) 239, 261, 405, 1325
BfmI CTRYAG 2 cut(s) 8, 777
BfuAI ACCTGC 1 cut(s) 403
BfuI GTATCC 1 cut(s) 586
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 1 cut(s) 715
Bme18I GGWCC 2 cut(s) 576, 649
BmeT110I CYCGRG 1 cut(s) 1041
BmgBI CACGTC 1 cut(s) 1365
BmgT120I GGNCC 3 cut(s) 381, 576, 649
BmiI GGNNCC 3 cut(s) 497, 577, 1163
BmrFI CCNGG 1 cut(s) 715
BmsI GCATC 3 cut(s) 313, 530, 1292
Bpu10I CCTNAGC 2 cut(s) 377, 727
BpuEI CTTGAG 1 cut(s) 781
Bsa29I ATCGAT 1 cut(s) 1169
BsaAI YACGTR 1 cut(s) 760
BsaBI GATNNNNATC 2 cut(s) 954, 1175
BsaI GGTCTC 1 cut(s) 1110
BsaJI CCNNGG 1 cut(s) 714
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse1I ACTGG 5 cut(s) 384, 565, 757, 1065, 1141
Bse3DI GCAATG 3 cut(s) 681, 904, 1057
Bse8I GATNNNNATC 2 cut(s) 954, 1175
BseBI CCWGG 1 cut(s) 715
BseCI ATCGAT 1 cut(s) 1169
BseDI CCNNGG 1 cut(s) 714
BseGI GGATG 7 cut(s) 154, 309, 328, 521, 577, 724, 925
BseJI GATNNNNATC 2 cut(s) 954, 1175
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMI GCAATG 3 cut(s) 681, 904, 1057
BseMII CTCAG 6 cut(s) 173, 261, 391, 441, 741, 1006
BseNI ACTGG 5 cut(s) 384, 565, 757, 1065, 1141
BseXI GCAGC 7 cut(s) 22, 421, 698, 705, 830, 991, 1189
BsgI GTGCAG 4 cut(s) 91, 837, 850, 990
Bsh1236I CGCG 1 cut(s) 34
Bsh1285I CGRYCG 1 cut(s) 1169
BshFI GGCC 3 cut(s) 383, 756, 942
BshVI ATCGAT 1 cut(s) 1169
BsiEI CGRYCG 1 cut(s) 1169
BsiHKAI GWGCWC 3 cut(s) 235, 1265, 1278
BsiHKCI CYCGRG 1 cut(s) 1041
BslFI GGGAC 1 cut(s) 1024
BslI CCNNNNNNNGG 1 cut(s) 340
BsmAI GTCTC 3 cut(s) 266, 1068, 1110
BsmFI GGGAC 1 cut(s) 1024
BsmI GAATGC 2 cut(s) 158, 1252
BsnI GGCC 3 cut(s) 383, 756, 942
Bso31I GGTCTC 1 cut(s) 1110
BsoBI CYCGRG 1 cut(s) 1041
Bsp1286I GDGCHC 3 cut(s) 235, 1265, 1278
Bsp143I GATC 6 cut(s) 118, 495, 826, 1166, 1170, 1208
BspANI GGCC 3 cut(s) 383, 756, 942
BspCNI CTCAG 6 cut(s) 172, 262, 390, 442, 740, 1005
BspDI ATCGAT 1 cut(s) 1169
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 3 cut(s) 497, 577, 1163
BspMAI CTGCAG 1 cut(s) 12
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 3 cut(s) 490, 503, 1216
BspTNI GGTCTC 1 cut(s) 1110
BsrBI CCGCTC 2 cut(s) 373, 1308
BsrDI GCAATG 3 cut(s) 681, 904, 1057
BsrI ACTGG 5 cut(s) 384, 565, 757, 1065, 1141
BssECI CCNNGG 1 cut(s) 714
BssMI GATC 6 cut(s) 118, 495, 826, 1166, 1170, 1208
BssSI CACGAG 1 cut(s) 50
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 715
Bst4CI ACNGT 2 cut(s) 629, 1220
Bst6I CTCTTC 1 cut(s) 174
BstBAI YACGTR 1 cut(s) 760
BstC8I GCNNGC 3 cut(s) 484, 691, 1310
BstDEI CTNAG 6 cut(s) 159, 270, 377, 450, 727, 992
BstENI CCTNNNNNAGG 1 cut(s) 338
BstF5I GGATG 7 cut(s) 154, 309, 328, 521, 577, 724, 925
BstFNI CGCG 1 cut(s) 34
BstKTI GATC 6 cut(s) 121, 498, 829, 1169, 1173, 1211
BstMAI GTCTC 3 cut(s) 266, 1068, 1110
BstMBI GATC 6 cut(s) 118, 495, 826, 1166, 1170, 1208
BstMCI CGRYCG 1 cut(s) 1169
BstMWI GCNNNNNNNGC 4 cut(s) 83, 113, 266, 1211
BstNI CCWGG 1 cut(s) 715
BstNSI RCATGY 1 cut(s) 486
BstSCI CCNGG 1 cut(s) 713
BstSFI CTRYAG 2 cut(s) 8, 777
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 7 cut(s) 22, 421, 698, 705, 830, 991, 1189
BstX2I RGATCY 2 cut(s) 495, 1208
BstXI CCANNNNNNTGG 1 cut(s) 950
BstYI RGATCY 2 cut(s) 495, 1208
Bsu15I ATCGAT 1 cut(s) 1169
BsuI GTATCC 1 cut(s) 586
BsuRI GGCC 3 cut(s) 383, 756, 942
BsuTUI ATCGAT 1 cut(s) 1169
BtrI CACGTC 1 cut(s) 1365
BtsCI GGATG 7 cut(s) 154, 309, 328, 521, 577, 724, 925
BtsI GCAGTG 3 cut(s) 20, 117, 1278
BtsIMutI CAGTG 8 cut(s) 20, 117, 391, 750, 1000, 1072, 1134, 1278
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 3 cut(s) 484, 691, 1310
CaiI CAGNNNCTG 1 cut(s) 116
Cfr13I GGNCC 3 cut(s) 381, 576, 649
ClaI ATCGAT 1 cut(s) 1169
CseI GACGC 1 cut(s) 1140
Csp6I GTAC 5 cut(s) 454, 538, 831, 1122, 1356
CviAII CATG 9 cut(s) 483, 506, 665, 806, 880, 916, 944, 1302, 1313
CviQI GTAC 5 cut(s) 454, 538, 831, 1122, 1356
DdeI CTNAG 6 cut(s) 159, 270, 377, 450, 727, 992
DpnI GATC 6 cut(s) 120, 497, 828, 1168, 1172, 1210
DpnII GATC 6 cut(s) 118, 495, 826, 1166, 1170, 1208
EaeI YGGCCR 1 cut(s) 754
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
EciI GGCGGA 2 cut(s) 419, 1106
Eco31I GGTCTC 1 cut(s) 1110
Eco47I GGWCC 2 cut(s) 576, 649
Eco57I CTGAAG 2 cut(s) 107, 1289
Eco72I CACGTG 1 cut(s) 760
Eco88I CYCGRG 1 cut(s) 1041
EcoNI CCTNNNNNAGG 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 713
FaeI CATG 9 cut(s) 486, 509, 668, 809, 883, 919, 947, 1305, 1316
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 1 cut(s) 1024
FatI CATG 9 cut(s) 482, 505, 664, 805, 879, 915, 943, 1301, 1312
FauI CCCGC 1 cut(s) 1301
FauNDI CATATG 1 cut(s) 932
FokI GGATG 7 cut(s) 161, 316, 335, 508, 584, 731, 932
FspBI CTAG 4 cut(s) 239, 261, 405, 1325
HaeIII GGCC 3 cut(s) 383, 756, 942
HgaI GACGC 1 cut(s) 1140
Hin1II CATG 9 cut(s) 486, 509, 668, 809, 883, 919, 947, 1305, 1316
HincII GTYRAC 2 cut(s) 135, 468
HindII GTYRAC 2 cut(s) 135, 468
HindIII AAGCTT 2 cut(s) 84, 192
HinfI GANTC 2 cut(s) 464, 1347
HpaI GTTAAC 1 cut(s) 135
Hpy166II GTNNAC 3 cut(s) 135, 468, 566
Hpy188I TCNGA 3 cut(s) 43, 126, 1269
Hpy188III TCNNGA 6 cut(s) 95, 647, 655, 1041, 1109, 1184
Hpy8I GTNNAC 3 cut(s) 135, 468, 566
Hpy99I CGWCG 1 cut(s) 1156
HpyAV CCTTC 5 cut(s) 121, 313, 437, 503, 1264
HpyCH4III ACNGT 2 cut(s) 629, 1220
HpyCH4IV ACGT 3 cut(s) 759, 1197, 1364
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 113, 266, 1211
HpyF3I CTNAG 6 cut(s) 159, 270, 377, 450, 727, 992
HpySE526I ACGT 3 cut(s) 759, 1197, 1364
Hsp92II CATG 9 cut(s) 486, 509, 668, 809, 883, 919, 947, 1305, 1316
KspAI GTTAAC 1 cut(s) 135
Kzo9I GATC 6 cut(s) 118, 495, 826, 1166, 1170, 1208
LmnI GCTCC 3 cut(s) 1161, 1273, 1305
Lsp1109I GCAGC 7 cut(s) 22, 421, 698, 705, 830, 991, 1189
LweI GCATC 3 cut(s) 313, 530, 1292
MaeI CTAG 4 cut(s) 239, 261, 405, 1325
MaeII ACGT 3 cut(s) 759, 1197, 1364
MaeIII GTNAC 4 cut(s) 17, 606, 860, 1021
MalI GATC 6 cut(s) 120, 497, 828, 1168, 1172, 1210
MbiI CCGCTC 2 cut(s) 373, 1308
MboI GATC 6 cut(s) 118, 495, 826, 1166, 1170, 1208
MboII GAAGA 6 cut(s) 113, 191, 196, 371, 452, 950
MflI RGATCY 2 cut(s) 495, 1208
MhlI GDGCHC 3 cut(s) 235, 1265, 1278
MlsI TGGCCA 1 cut(s) 756
MluCI AATT 9 cut(s) 200, 291, 541, 704, 791, 892, 1087, 1156, 1192
MluNI TGGCCA 1 cut(s) 756
MlyI GAGTC 1 cut(s) 473
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 6 cut(s) 334, 487, 506, 662, 726, 1332
Mox20I TGGCCA 1 cut(s) 756
MscI TGGCCA 1 cut(s) 756
MseI TTAA 6 cut(s) 134, 189, 290, 336, 582, 1127
MslI CAYNNNNRTG 3 cut(s) 584, 948, 1014
Msp20I TGGCCA 1 cut(s) 756
MspA1I CMGCKG 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 715
Mva1269I GAATGC 2 cut(s) 158, 1252
MvaI CCWGG 1 cut(s) 715
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 4 cut(s) 83, 113, 266, 1211
NdeI CATATG 1 cut(s) 932
NdeII GATC 6 cut(s) 118, 495, 826, 1166, 1170, 1208
NlaIII CATG 9 cut(s) 486, 509, 668, 809, 883, 919, 947, 1305, 1316
NlaIV GGNNCC 3 cut(s) 497, 577, 1163
NmuCI GTSAC 2 cut(s) 606, 1021
NspI RCATGY 1 cut(s) 486
PaeI GCATGC 1 cut(s) 486
PctI GAATGC 2 cut(s) 158, 1252
PfeI GAWTC 1 cut(s) 1347
Ple19I CGATCG 1 cut(s) 1169
PleI GAGTC 1 cut(s) 472
PmaCI CACGTG 1 cut(s) 760
PmlI CACGTG 1 cut(s) 760
PpsI GAGTC 1 cut(s) 472
Ppu21I YACGTR 1 cut(s) 760
Psp6I CCWGG 1 cut(s) 713
PspCI CACGTG 1 cut(s) 760
PspGI CCWGG 1 cut(s) 713
PspN4I GGNNCC 3 cut(s) 497, 577, 1163
PspPI GGNCC 3 cut(s) 381, 576, 649
PstI CTGCAG 1 cut(s) 12
PstNI CAGNNNCTG 1 cut(s) 116
PsuI RGATCY 2 cut(s) 495, 1208
PvuI CGATCG 1 cut(s) 1169
RsaI GTAC 5 cut(s) 455, 539, 832, 1123, 1357
RsaNI GTAC 5 cut(s) 454, 538, 831, 1122, 1356
RseI CAYNNNNRTG 3 cut(s) 584, 948, 1014
SaqAI TTAA 6 cut(s) 134, 189, 290, 336, 582, 1127
Sau3AI GATC 6 cut(s) 118, 495, 826, 1166, 1170, 1208
Sau96I GGNCC 3 cut(s) 381, 576, 649
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 1 cut(s) 715
SduI GDGCHC 3 cut(s) 235, 1265, 1278
SfaNI GCATC 3 cut(s) 313, 530, 1292
SfcI CTRYAG 2 cut(s) 8, 777
SinI GGWCC 2 cut(s) 576, 649
SmiMI CAYNNNNRTG 3 cut(s) 584, 948, 1014
SmlI CTYRAG 1 cut(s) 796
SmoI CTYRAG 1 cut(s) 796
SphI GCATGC 1 cut(s) 486
Sse9I AATT 9 cut(s) 200, 291, 541, 704, 791, 892, 1087, 1156, 1192
SspMI CTAG 4 cut(s) 239, 261, 405, 1325
StyD4I CCNGG 1 cut(s) 713
TaaI ACNGT 2 cut(s) 629, 1220
TaiI ACGT 3 cut(s) 762, 1200, 1367
TaqI TCGA 3 cut(s) 1154, 1169, 1244
TasI AATT 9 cut(s) 200, 291, 541, 704, 791, 892, 1087, 1156, 1192
TatI WGTACW 3 cut(s) 453, 537, 1355
TauI GCSGC 3 cut(s) 110, 170, 376
TfiI GAWTC 1 cut(s) 1347
Tru1I TTAA 6 cut(s) 134, 189, 290, 336, 582, 1127
Tru9I TTAA 6 cut(s) 134, 189, 290, 336, 582, 1127
TscAI CASTG 8 cut(s) 20, 117, 391, 757, 1000, 1072, 1141, 1285
TseFI GTSAC 2 cut(s) 606, 1021
TseI GCWGC 7 cut(s) 10, 409, 686, 693, 818, 1004, 1202
Tsp45I GTSAC 2 cut(s) 606, 1021
TspDTI ATGAA 5 cut(s) 165, 332, 372, 522, 1290
TspGWI ACGGA 1 cut(s) 1359
TspRI CASTG 8 cut(s) 20, 117, 391, 757, 1000, 1072, 1141, 1285
VpaK11BI GGWCC 2 cut(s) 576, 649
XagI CCTNNNNNAGG 1 cut(s) 338
XapI RAATTY 1 cut(s) 791
XceI RCATGY 1 cut(s) 486
XcmI CCANNNNNNNNNTGG 1 cut(s) 749
XspI CTAG 4 cut(s) 239, 261, 405, 1325
ZrmI AGTACT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.