Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8375695.1

Orthogroup ID

OG0009792

Physical Location & Seq

Genomic Coordinates Reverse (-)

106 .. 1107

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8375695.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

atgcttgagcggatcaaggccagtggtttgcaaaaactagccatgcagcaagtagatggtgtggtccgccaaagtgaagaaggtgctgagtactttgtggagtcaaccaatcccaccacatgcaagaacaggatcaatgcccatgacggtggctgtgcttccatattatttgagtacaactcaggcaaattgatttctggtggacaggatgggacaatcaaaatgtgggatacaagtacaggggctttgactaatacacttcatggttgcattggttctgttcttgaccttaccattacccatgataatagatctatcatcgcagcaagcagttcgaacaaattgtacgtatgggatgctaacttggggagagtgcgccatactctcaccggccacatggataaagtttgtgctgtagatgtgagtaagttctcaagtcgtcacattgtgagtgcagcctacgatcgtactataaaagtctgggatttgcaaaaaggttactgcaccaacacaataatcttccccaaacactgcaatgctctttgcttcagcatggacgggcagaccatttgctcaggtcatgttgatgggaatcttcggctgtgggatattcagaaaggaaagctactcaacgaagtggctgcacactcaaatgctgttacgtctatatctttgtcgcgaagtggcaacatggtattgacgagtgggagggacaatgtgcatcaccttttcgatatgagaaccctagaagtttgtggcacattgagagccaccggaaacagagtagcatctaattggagccggtcctgtatcagtccagatgacaattacgttgctgctggatctgccgatggtgctgtgtatatctggtctatagccaaaggtgacattgtgagcactctgaaggaacacactaattctgtcctctgctgctcatggagtggacatggaaaacctctagcttctgcggacaagaatggagtaatttgtacttggacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000421 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005776 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006897 GO:0006907 GO:0006909 GO:0006914 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016740 GO:0019538 GO:0019776 GO:0019941 GO:0022607 GO:0030163 GO:0030587 GO:0031090 GO:0031154 GO:0032502 GO:0032991 GO:0034274 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0051179 GO:0051234 GO:0051603 GO:0051703 GO:0051704 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0090382 GO:0090702 GO:0098588 GO:0098657 GO:0098805 GO:0099120 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04621 map04136 map04138 map04140 map04621

Pfam Domains

Protein Families

ATG16 WD40

Protein Analysis

333

Amino Acids

36.08

Weight (kDa)

7.94

Isoelectric Point (pI)

19.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50230
fragaria_vesca	FvH4_5g06790 FvH4_5g06790
malus_domestica	MD06G1161200.v1.1 MD14G1166400.v1.1
prunus_persica	Prupe.5G160700_v2.0.a1 Prupe.5G160700_v2.0.a1
pyrus_communis	pycom06g14390 pycom14g13900
rosa_chinensis	RchiOBHm_Chr7g0191761 RchiOBHm_Chr7g0191771
rosa_laevigata	RLG00000004427
rosa_multiflora	Rmu_co8375695.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263550
rosa_rugosa	Rorug06G0511200
rosa_samantha	Rh7AG121000 Rh7BG122700 Rh7CG125600 Rh7DG124300
rosa_wichuraiana	Rw7G010300 Rw7G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	10
AccII	CGCG	1 cut(s)	679
AciI	CCGC	3 cut(s)	10, 67, 968
AclWI	GGATC	3 cut(s)	20, 140, 850
AcoI	YGGCCR	1 cut(s)	391
AcuI	CTGAAG	2 cut(s)	532, 923
AdeI	CACNNNGTG	1 cut(s)	448
AfaI	GTAC	6 cut(s)	92, 176, 238, 347, 469, 991
AjiI	CACGTC	1 cut(s)	999
AluBI	AGCT	2 cut(s)	625, 962
AluI	AGCT	2 cut(s)	625, 962
Alw21I	GWGCWC	1 cut(s)	899
AlwI	GGATC	3 cut(s)	20, 140, 850
AoxI	GGCC	2 cut(s)	18, 391
ApeKI	GCWGC	6 cut(s)	46, 323, 455, 641, 836, 930
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	2 cut(s)	64, 804
AsuHPI	GGTGA	3 cut(s)	379, 716, 896
AsuII	TTCGAA	1 cut(s)	335
AvaII	GGWCC	2 cut(s)	64, 804
Bbv12I	GWGCWC	1 cut(s)	899
BbvI	GCAGC	6 cut(s)	58, 335, 467, 628, 823, 917
BccI	CCATC	4 cut(s)	50, 203, 581, 845
BcgI	CGANNNNNNTGC	4 cut(s)	315, 349, 623, 657
BciVI	GTATCC	1 cut(s)	223
BfaI	CTAG	3 cut(s)	38, 746, 959
BfmI	CTRYAG	2 cut(s)	414, 873
BfuI	GTATCC	1 cut(s)	223
BglII	AGATCT	1 cut(s)	311
BisI	GCNGC	6 cut(s)	47, 324, 456, 642, 837, 931
BlsI	GCNGC	6 cut(s)	48, 325, 457, 643, 838, 932
BmcAI	AGTACT	1 cut(s)	92
Bme18I	GGWCC	2 cut(s)	64, 804
BmgBI	CACGTC	1 cut(s)	999
BmgT120I	GGNCC	2 cut(s)	64, 804
BmiI	GGNNCC	1 cut(s)	800
BmsI	GCATC	3 cut(s)	346, 730, 797
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
Bpu10I	CCTNAGC	1 cut(s)	574
Bpu14I	TTCGAA	1 cut(s)	335
BpuEI	CTTGAG	2 cut(s)	26, 418
BsaAI	YACGTR	1 cut(s)	349
BsaBI	GATNNNNATC	1 cut(s)	591
BsaWI	WCCGGW	1 cut(s)	773
Bse118I	RCCGGY	2 cut(s)	389, 801
Bse1I	ACTGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	541
Bse8I	GATNNNNATC	1 cut(s)	591
BseGI	GGATG	2 cut(s)	214, 361
BseJI	GATNNNNATC	1 cut(s)	591
BseMI	GCAATG	1 cut(s)	541
BseMII	CTCAG	3 cut(s)	78, 195, 588
BseNI	ACTGG	1 cut(s)	21
BseXI	GCAGC	6 cut(s)	58, 335, 467, 628, 823, 917
BsgI	GTGCAG	3 cut(s)	474, 487, 627
Bsh1236I	CGCG	1 cut(s)	679
Bsh1285I	CGRYCG	1 cut(s)	466
BshFI	GGCC	2 cut(s)	20, 393
BsiEI	CGRYCG	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	899
BsiSI	CCGG	3 cut(s)	390, 774, 802
BslFI	GGGAC	2 cut(s)	226, 725
BsmFI	GGGAC	2 cut(s)	226, 725
BsnI	GGCC	2 cut(s)	20, 393
Bsp119I	TTCGAA	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	899
Bsp143I	GATC	5 cut(s)	12, 132, 311, 463, 842
Bsp68I	TCGCGA	1 cut(s)	679
BspACI	CCGC	3 cut(s)	10, 67, 968
BspANI	GGCC	2 cut(s)	20, 393
BspCNI	CTCAG	3 cut(s)	79, 194, 587
BspFNI	CGCG	1 cut(s)	679
BspLI	GGNNCC	1 cut(s)	800
BspPI	GGATC	3 cut(s)	20, 140, 850
BspT104I	TTCGAA	1 cut(s)	335
BsrBI	CCGCTC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	541
BsrFI	RCCGGY	2 cut(s)	389, 801
BsrI	ACTGG	1 cut(s)	21
BssAI	RCCGGY	2 cut(s)	389, 801
BssMI	GATC	5 cut(s)	12, 132, 311, 463, 842
Bst4CI	ACNGT	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	349
BstBI	TTCGAA	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	3 cut(s)	87, 181, 574
BstF5I	GGATG	2 cut(s)	214, 361
BstFNI	CGCG	1 cut(s)	679
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	5 cut(s)	15, 135, 314, 466, 845
BstMBI	GATC	5 cut(s)	12, 132, 311, 463, 842
BstMCI	CGRYCG	1 cut(s)	466
BstMWI	GCNNNNNNNGC	2 cut(s)	845, 854
BstNSI	RCATGY	1 cut(s)	123
BstSFI	CTRYAG	2 cut(s)	414, 873
BstSNI	TACGTA	1 cut(s)	349
BstUI	CGCG	1 cut(s)	679
BstV1I	GCAGC	6 cut(s)	58, 335, 467, 628, 823, 917
BstX2I	RGATCY	2 cut(s)	311, 842
BstXI	CCANNNNNNTGG	1 cut(s)	149
BstYI	RGATCY	2 cut(s)	311, 842
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	20, 393
BtgZI	GCGATG	1 cut(s)	304
BtrI	CACGTC	1 cut(s)	999
BtsCI	GGATG	2 cut(s)	214, 361
BtsI	GCAGTG	1 cut(s)	529
BtsIMutI	CAGTG	2 cut(s)	28, 529
BtuMI	TCGCGA	1 cut(s)	679
Cac8I	GCNNGC	1 cut(s)	328
CfoI	GCGC	1 cut(s)	378
Cfr10I	RCCGGY	2 cut(s)	389, 801
Cfr13I	GGNCC	2 cut(s)	64, 804
Csp6I	GTAC	6 cut(s)	91, 175, 237, 346, 468, 990
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviQI	GTAC	6 cut(s)	91, 175, 237, 346, 468, 990
DdeI	CTNAG	3 cut(s)	87, 181, 574
DpnI	GATC	5 cut(s)	14, 134, 313, 465, 844
DpnII	GATC	5 cut(s)	12, 132, 311, 463, 842
DraIII	CACNNNGTG	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	391
EciI	GGCGGA	1 cut(s)	56
Eco105I	TACGTA	1 cut(s)	349
Eco47I	GGWCC	2 cut(s)	64, 804
Eco57I	CTGAAG	2 cut(s)	532, 923
FaqI	GGGAC	2 cut(s)	226, 725
Fnu4HI	GCNGC	6 cut(s)	47, 324, 456, 642, 837, 931
FokI	GGATG	2 cut(s)	221, 368
Fsp4HI	GCNGC	6 cut(s)	47, 324, 456, 642, 837, 931
FspBI	CTAG	3 cut(s)	38, 746, 959
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	6 cut(s)	47, 324, 456, 642, 837, 931
HaeIII	GGCC	2 cut(s)	20, 393
HapII	CCGG	3 cut(s)	390, 774, 802
HhaI	GCGC	1 cut(s)	378
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HinfI	GANTC	2 cut(s)	101, 592
HpaII	CCGG	3 cut(s)	390, 774, 802
HphI	GGTGA	3 cut(s)	379, 716, 896
Hpy166II	GTNNAC	3 cut(s)	105, 203, 944
Hpy188I	TCNGA	2 cut(s)	615, 903
Hpy188III	TCNNGA	3 cut(s)	284, 678, 818
Hpy8I	GTNNAC	3 cut(s)	105, 203, 944
HpyAV	CCTTC	2 cut(s)	74, 898
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	4 cut(s)	348, 662, 831, 998
HpyF10VI	GCNNNNNNNGC	2 cut(s)	845, 854
HpyF3I	CTNAG	3 cut(s)	87, 181, 574
HpySE526I	ACGT	4 cut(s)	348, 662, 831, 998
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	5 cut(s)	12, 132, 311, 463, 842
LmnI	GCTCC	1 cut(s)	798
Lsp1109I	GCAGC	6 cut(s)	58, 335, 467, 628, 823, 917
LweI	GCATC	3 cut(s)	346, 730, 797
MaeI	CTAG	3 cut(s)	38, 746, 959
MaeII	ACGT	4 cut(s)	348, 662, 831, 998
MaeIII	GTNAC	4 cut(s)	440, 497, 658, 884
MalI	GATC	5 cut(s)	14, 134, 313, 465, 844
MbiI	CCGCTC	1 cut(s)	10
MboI	GATC	5 cut(s)	12, 132, 311, 463, 842
MboII	GAAGA	3 cut(s)	89, 511, 587
MflI	RGATCY	2 cut(s)	311, 842
MhlI	GDGCHC	1 cut(s)	899
MluCI	AATT	6 cut(s)	188, 341, 793, 826, 916, 984
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	3 cut(s)	702, 935, 966
MslI	CAYNNNNRTG	4 cut(s)	147, 534, 585, 651
MspI	CCGG	3 cut(s)	390, 774, 802
MvnI	CGCG	1 cut(s)	679
MwoI	GCNNNNNNNGC	2 cut(s)	845, 854
NdeII	GATC	5 cut(s)	12, 132, 311, 463, 842
NlaIV	GGNNCC	1 cut(s)	800
NmuCI	GTSAC	2 cut(s)	440, 884
NruI	TCGCGA	1 cut(s)	679
NspI	RCATGY	1 cut(s)	123
NspV	TTCGAA	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	592
PkrI	GCNGC	6 cut(s)	48, 325, 457, 643, 838, 932
Ple19I	CGATCG	1 cut(s)	466
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Ppu21I	YACGTR	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	800
PspPI	GGNCC	2 cut(s)	64, 804
PsrI	GAACNNNNNNTAC	2 cut(s)	329, 361
PsuI	RGATCY	2 cut(s)	311, 842
PvuI	CGATCG	1 cut(s)	466
RruI	TCGCGA	1 cut(s)	679
RsaI	GTAC	6 cut(s)	92, 176, 238, 347, 469, 991
RsaNI	GTAC	6 cut(s)	91, 175, 237, 346, 468, 990
RseI	CAYNNNNRTG	4 cut(s)	147, 534, 585, 651
SatI	GCNGC	6 cut(s)	47, 324, 456, 642, 837, 931
Sau3AI	GATC	5 cut(s)	12, 132, 311, 463, 842
Sau96I	GGNCC	2 cut(s)	64, 804
ScaI	AGTACT	1 cut(s)	92
SchI	GAGTC	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	899
SfaNI	GCATC	3 cut(s)	346, 730, 797
SfcI	CTRYAG	2 cut(s)	414, 873
SfuI	TTCGAA	1 cut(s)	335
SinI	GGWCC	2 cut(s)	64, 804
SmiMI	CAYNNNNRTG	4 cut(s)	147, 534, 585, 651
SmlI	CTYRAG	2 cut(s)	5, 433
SmoI	CTYRAG	2 cut(s)	5, 433
SnaBI	TACGTA	1 cut(s)	349
Sse9I	AATT	6 cut(s)	188, 341, 793, 826, 916, 984
SsiI	CCGC	3 cut(s)	10, 67, 968
SspMI	CTAG	3 cut(s)	38, 746, 959
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	4 cut(s)	351, 665, 834, 1001
TaqI	TCGA	2 cut(s)	335, 732
TasI	AATT	6 cut(s)	188, 341, 793, 826, 916, 984
TatI	WGTACW	4 cut(s)	90, 174, 236, 989
TfiI	GAWTC	1 cut(s)	592
TscAI	CASTG	2 cut(s)	28, 536
TseFI	GTSAC	2 cut(s)	440, 884
TseI	GCWGC	6 cut(s)	46, 323, 455, 641, 836, 930
Tsp45I	GTSAC	2 cut(s)	440, 884
TspDTI	ATGAA	1 cut(s)	251
TspRI	CASTG	2 cut(s)	28, 536
VpaK11BI	GGWCC	2 cut(s)	64, 804
XceI	RCATGY	1 cut(s)	123
XspI	CTAG	3 cut(s)	38, 746, 959
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.