RchiOBHm_Chr7g0191761

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0009792
Physical Location & Seq
Forward (+)
10423857 .. 10427298
3442 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17137

Sequence Viewer

Length: 1146 bp
ATGGGTGGGGTTACTTCATCCATGGCTGCAAAGCTTGCGTTTTTCCCACCAAACCCACCTTCCTACAAGGTCATTAAGGGCCAGGCAACTGGGCTCTTGCTCATCGACCCTTTTCCCCACCGTGAAAACGTCGACGTTTTGAAGTTTCAGACCCGCCGCGGCAATGAGATCGTGGCCGTTTATGTCCGCCACCCAATGGCCACCTCCACCGTTCTGTATTCTCATGGCAACGCTACTGATATAGGCCAGATGTACGAGCTCTTCATTGAATTGAGTATTCACCTGCGTGTCAATCTCATGGGGTATGATTACTCTGGATATGGGCAGTCATCAGGCAAGCCAAGTGAACATAATACTTATGCAGATATTGAAGCTGCATATAAGTGTCTCGAAGAGAGGTATGGTGCCAAGCAGGAGGACATAATCCTCTATGGTCAATCTGTCGGAAGTGGCCCTACTGTTGATCTTGCTGCTCGTTTGCCTCAACTGAGAGCAATTGTTCTGCATAGTCCGATATTATCAGGGTTAAGAGTTATGTATTCTGTGAAGCGCAGTTATTGGTTTGATATCTACAAGAACATTGATAAAATCCCACTGGTGAAATGTCCTGTGCTGGTAATACATGGAACATGTGATGAAGTTGTTGACTGCTCTCACGGCAAGCAACTTTGGCTACTGTGCCAAGAGAAATACGAACCTCTATGGCTCAAAGGCGGAAATCACTGCAATTTGGAACTCTATCCGGAATATATTAGACATCTCAACAAGTTCATATCCACTATTGAAAAAGCGCCTCCACGCAAGTTGAGTTCAAGGAAGAGCACAGACTGTGTCGAACGTCCTAGGCATAGTGTTGAATATCCTAGGCACAGTGTTGATTACTCTGAGCTTCCGAGGAAGAGTACTGATAAGAGAGAAAAATCAAGGAGAAGCACTGATAGACGACCTGAAAAGCTGAGACTTAATGATTACAAGTTAAATAACAGTGACAAGCTAGAGAAATTTAGGATCTCTGTTGATCAGATAGAGAGGTCCCGAAGGAGCGTCGAATACCACCATGAGAGATCATCTAGGAGAAGCGTTGACCATCAGCTAGAAAAACCAAGGAGAAGTGTCGACTGGCTGGACAGAATTCGAGCTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

381

Amino Acids

43.97

Weight (kDa)

9.32

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 69 - 174 6.3e-08 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 71 - 171 1.3e-06 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 291
Acc36I ACCTGC 1 cut(s) 291
AccB1I GGYRCC 1 cut(s) 404
AccB7I CCANNNNNTGG 1 cut(s) 196
AccI GTMKAC 2 cut(s) 132, 1116
AccII CGCG 1 cut(s) 159
AccIII TCCGGA 1 cut(s) 742
AciI CCGC 5 cut(s) 154, 157, 159, 187, 714
AclWI GGATC 1 cut(s) 1016
AcoI YGGCCR 2 cut(s) 174, 198
AcsI RAATTY 2 cut(s) 1001, 1131
AfaI GTAC 2 cut(s) 254, 904
AfiI CCNNNNNNNGG 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 629
AgsI TTSAA 6 cut(s) 142, 269, 371, 785, 813, 857
AjnI CCWGG 1 cut(s) 81
AjuI GAANNNNNNNTTGG 2 cut(s) 43, 75
AleI CACNNNNGTG 1 cut(s) 285
AluBI AGCT 8 cut(s) 34, 259, 374, 889, 955, 994, 1093, 1139
AluI AGCT 8 cut(s) 34, 259, 374, 889, 955, 994, 1093, 1139
Alw21I GWGCWC 2 cut(s) 261, 824
Alw26I GTCTC 2 cut(s) 392, 952
AlwI GGATC 1 cut(s) 1016
Aor13HI TCCGGA 1 cut(s) 742
AoxI GGCC 5 cut(s) 79, 174, 198, 244, 451
ApeKI GCWGC 3 cut(s) 26, 374, 470
ApoI RAATTY 2 cut(s) 1001, 1131
AspA2I CCTAGG 2 cut(s) 842, 863
AspLEI GCGC 2 cut(s) 552, 793
AspS9I GGNCC 3 cut(s) 79, 452, 1032
AsuHPI GGTGA 2 cut(s) 272, 610
AvaII GGWCC 1 cut(s) 1032
AvrII CCTAGG 2 cut(s) 842, 863
BalI TGGCCA 1 cut(s) 200
BanI GGYRCC 1 cut(s) 404
BanII GRGCYC 2 cut(s) 96, 261
BarI GAAGNNNNNNTAC 4 cut(s) 245, 277, 439, 471
Bbv12I GWGCWC 2 cut(s) 261, 824
BbvI GCAGC 3 cut(s) 13, 361, 457
BccI CCATC 1 cut(s) 1095
BceAI ACGGC 2 cut(s) 161, 673
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 1 cut(s) 83
BclI TGATCA 1 cut(s) 1018
BcoDI GTCTC 2 cut(s) 392, 952
BfaI CTAG 5 cut(s) 843, 864, 995, 1071, 1094
BfoI RGCGCY 1 cut(s) 794
BfuAI ACCTGC 1 cut(s) 291
BisI GCNGC 5 cut(s) 27, 157, 160, 375, 471
BlnI CCTAGG 2 cut(s) 842, 863
BlsI GCNGC 5 cut(s) 28, 158, 161, 376, 472
BmcAI AGTACT 1 cut(s) 904
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 1032
BmgT120I GGNCC 3 cut(s) 79, 452, 1032
BmiI GGNNCC 2 cut(s) 406, 1034
BmrFI CCNGG 1 cut(s) 83
BmrI ACTGGG 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 99
BsaJI CCNNGG 6 cut(s) 21, 157, 842, 863, 893, 1103
BsaWI WCCGGW 1 cut(s) 742
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 3 cut(s) 94, 600, 1124
Bse3DI GCAATG 1 cut(s) 169
BseAI TCCGGA 1 cut(s) 742
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 6 cut(s) 21, 157, 842, 863, 893, 1103
BseGI GGATG 1 cut(s) 17
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 3 cut(s) 479, 876, 947
BseNI ACTGG 3 cut(s) 94, 600, 1124
BseXI GCAGC 3 cut(s) 13, 361, 457
BseYI CCCAGC 1 cut(s) 1139
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 5 cut(s) 81, 176, 200, 246, 453
BshNI GGYRCC 1 cut(s) 404
BsiHKAI GWGCWC 2 cut(s) 261, 824
BsiSI CCGG 1 cut(s) 743
BslFI GGGAC 1 cut(s) 1018
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 2 cut(s) 392, 952
BsmFI GGGAC 1 cut(s) 1018
BsnI GGCC 5 cut(s) 81, 176, 200, 246, 453
Bsp1286I GDGCHC 3 cut(s) 96, 261, 824
Bsp13I TCCGGA 1 cut(s) 742
Bsp143I GATC 5 cut(s) 168, 463, 1008, 1018, 1064
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 5 cut(s) 154, 157, 159, 187, 714
BspANI GGCC 5 cut(s) 81, 176, 200, 246, 453
BspCNI CTCAG 3 cut(s) 480, 877, 948
BspEI TCCGGA 1 cut(s) 742
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 2 cut(s) 406, 1034
BspMI ACCTGC 1 cut(s) 291
BspPI GGATC 1 cut(s) 1016
BspQI GCTCTTC 2 cut(s) 266, 812
BspT107I GGYRCC 1 cut(s) 404
BsrDI GCAATG 1 cut(s) 169
BsrI ACTGG 3 cut(s) 94, 600, 1124
BssECI CCNNGG 6 cut(s) 21, 157, 842, 863, 893, 1103
BssMI GATC 5 cut(s) 168, 463, 1008, 1018, 1064
BssT1I CCWWGG 4 cut(s) 21, 842, 863, 1103
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 7 cut(s) 122, 211, 460, 678, 830, 872, 986
Bst6I CTCTTC 4 cut(s) 266, 387, 812, 893
BstAPI GCANNNNNTGC 1 cut(s) 35
BstC8I GCNNGC 3 cut(s) 36, 338, 662
BstDEI CTNAG 3 cut(s) 488, 885, 956
BstDSI CCRYGG 2 cut(s) 21, 157
BstF5I GGATG 1 cut(s) 17
BstFNI CGCG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 794
BstHHI GCGC 2 cut(s) 552, 793
BstKTI GATC 5 cut(s) 171, 466, 1011, 1021, 1067
BstMAI GTCTC 2 cut(s) 392, 952
BstMBI GATC 5 cut(s) 168, 463, 1008, 1018, 1064
BstMWI GCNNNNNNNGC 3 cut(s) 35, 657, 670
BstNI CCWGG 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 633
BstSCI CCNGG 1 cut(s) 81
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 3 cut(s) 13, 361, 457
BstX2I RGATCY 1 cut(s) 1008
BstXI CCANNNNNNTGG 1 cut(s) 89
BstYI RGATCY 1 cut(s) 1008
BsuRI GGCC 5 cut(s) 81, 176, 200, 246, 453
BtgI CCRYGG 2 cut(s) 21, 157
BtsCI GGATG 1 cut(s) 17
BtsI GCAGTG 1 cut(s) 721
BtsIMutI CAGTG 5 cut(s) 593, 721, 877, 933, 991
BveI ACCTGC 1 cut(s) 291
Cac8I GCNNGC 3 cut(s) 36, 338, 662
CfoI GCGC 2 cut(s) 552, 793
Cfr13I GGNCC 3 cut(s) 79, 452, 1032
Cfr42I CCGCGG 1 cut(s) 160
CseI GACGC 1 cut(s) 1033
Csp6I GTAC 2 cut(s) 253, 903
CspCI CAANNNNNGTGG 2 cut(s) 786, 821
CviAII CATG 6 cut(s) 22, 224, 298, 623, 630, 1058
CviQI GTAC 2 cut(s) 253, 903
DdeI CTNAG 3 cut(s) 488, 885, 956
DpnI GATC 5 cut(s) 170, 465, 1010, 1020, 1066
DpnII GATC 5 cut(s) 168, 463, 1008, 1018, 1064
EaeI YGGCCR 2 cut(s) 174, 198
Eam1104I CTCTTC 4 cut(s) 266, 387, 812, 893
EarI CTCTTC 4 cut(s) 266, 387, 812, 893
EciI GGCGGA 2 cut(s) 176, 729
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 4 cut(s) 21, 842, 863, 1103
Eco24I GRGCYC 2 cut(s) 96, 261
Eco32I GATATC 1 cut(s) 568
Eco47I GGWCC 1 cut(s) 1032
Eco53kI GAGCTC 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 259
EcoO109I RGGNCCY 1 cut(s) 1032
EcoRI GAATTC 1 cut(s) 1131
EcoRII CCWGG 1 cut(s) 81
EcoRV GATATC 1 cut(s) 568
EcoT14I CCWWGG 4 cut(s) 21, 842, 863, 1103
EcoT38I GRGCYC 2 cut(s) 96, 261
ErhI CCWWGG 4 cut(s) 21, 842, 863, 1103
FaeI CATG 6 cut(s) 25, 227, 301, 626, 633, 1061
FaqI GGGAC 1 cut(s) 1018
FatI CATG 6 cut(s) 21, 223, 297, 622, 629, 1057
FauI CCCGC 1 cut(s) 161
FbaI TGATCA 1 cut(s) 1018
FblI GTMKAC 2 cut(s) 132, 1116
Fnu4HI GCNGC 5 cut(s) 27, 157, 160, 375, 471
FokI GGATG 1 cut(s) 4
FriOI GRGCYC 2 cut(s) 96, 261
Fsp4HI GCNGC 5 cut(s) 27, 157, 160, 375, 471
FspBI CTAG 5 cut(s) 843, 864, 995, 1071, 1094
GlaI GCGC 2 cut(s) 551, 792
GluI GCNGC 5 cut(s) 27, 157, 160, 375, 471
GsaI CCCAGC 1 cut(s) 1143
HaeII RGCGCY 1 cut(s) 794
HaeIII GGCC 5 cut(s) 81, 176, 200, 246, 453
HapII CCGG 1 cut(s) 743
HgaI GACGC 1 cut(s) 1033
HhaI GCGC 2 cut(s) 552, 793
Hin1II CATG 6 cut(s) 25, 227, 301, 626, 633, 1061
Hin6I GCGC 2 cut(s) 550, 791
HinP1I GCGC 2 cut(s) 550, 791
HincII GTYRAC 4 cut(s) 133, 646, 1084, 1117
HindII GTYRAC 4 cut(s) 133, 646, 1084, 1117
HindIII AAGCTT 1 cut(s) 32
HpaII CCGG 1 cut(s) 743
HphI GGTGA 2 cut(s) 272, 610
Hpy166II GTNNAC 5 cut(s) 133, 347, 646, 1084, 1117
Hpy188I TCNGA 6 cut(s) 150, 446, 513, 886, 894, 1023
Hpy188III TCNNGA 4 cut(s) 315, 389, 743, 1035
Hpy8I GTNNAC 5 cut(s) 133, 347, 646, 1084, 1117
Hpy99I CGWCG 3 cut(s) 134, 137, 1049
HpyAV CCTTC 2 cut(s) 69, 1032
HpyCH4III ACNGT 7 cut(s) 122, 211, 460, 678, 830, 872, 986
HpyCH4IV ACGT 3 cut(s) 129, 135, 838
HpyCH4V TGCA 5 cut(s) 29, 362, 377, 505, 726
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 657, 670
HpyF3I CTNAG 3 cut(s) 488, 885, 956
HpySE526I ACGT 3 cut(s) 129, 135, 838
Hsp92II CATG 6 cut(s) 25, 227, 301, 626, 633, 1061
HspAI GCGC 2 cut(s) 550, 791
Kpn2I TCCGGA 1 cut(s) 742
Ksp22I TGATCA 1 cut(s) 1018
KspI CCGCGG 1 cut(s) 160
Kzo9I GATC 5 cut(s) 168, 463, 1008, 1018, 1064
LguI GCTCTTC 2 cut(s) 266, 812
LmnI GCTCC 1 cut(s) 1041
Lsp1109I GCAGC 3 cut(s) 13, 361, 457
MaeI CTAG 5 cut(s) 843, 864, 995, 1071, 1094
MaeII ACGT 3 cut(s) 129, 135, 838
MaeIII GTNAC 2 cut(s) 10, 986
MalI GATC 5 cut(s) 170, 465, 1010, 1020, 1066
MboI GATC 5 cut(s) 168, 463, 1008, 1018, 1064
MboII GAAGA 4 cut(s) 253, 404, 829, 910
MfeI CAATTG 1 cut(s) 495
MflI RGATCY 1 cut(s) 1008
MhlI GDGCHC 3 cut(s) 96, 261, 824
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 5 cut(s) 269, 495, 727, 1001, 1131
MluNI TGGCCA 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 424
MnlI CCTC 9 cut(s) 214, 390, 409, 437, 492, 708, 804, 888, 1023
Mox20I TGGCCA 1 cut(s) 200
MroI TCCGGA 1 cut(s) 742
MscI TGGCCA 1 cut(s) 200
MseI TTAA 4 cut(s) 75, 527, 963, 977
MslI CAYNNNNRTG 2 cut(s) 285, 382
Msp20I TGGCCA 1 cut(s) 200
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 1 cut(s) 743
MspR9I CCNGG 1 cut(s) 83
MunI CAATTG 1 cut(s) 495
MvaI CCWGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 3 cut(s) 35, 657, 670
NcoI CCATGG 1 cut(s) 21
NdeII GATC 5 cut(s) 168, 463, 1008, 1018, 1064
NlaIII CATG 6 cut(s) 25, 227, 301, 626, 633, 1061
NlaIV GGNNCC 2 cut(s) 406, 1034
NmuCI GTSAC 1 cut(s) 986
NspI RCATGY 1 cut(s) 633
OliI CACNNNNGTG 1 cut(s) 285
PaqCI CACCTGC 1 cut(s) 291
PciI ACATGT 1 cut(s) 629
PciSI GCTCTTC 2 cut(s) 266, 812
PflFI GACNNNGTC 1 cut(s) 830
PflMI CCANNNNNTGG 1 cut(s) 196
PkrI GCNGC 5 cut(s) 28, 158, 161, 376, 472
PpuMI RGGWCCY 1 cut(s) 1032
PscI ACATGT 1 cut(s) 629
Psp124BI GAGCTC 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 1032
Psp6I CCWGG 1 cut(s) 81
PspFI CCCAGC 1 cut(s) 1139
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 2 cut(s) 406, 1034
PspPI GGNCC 3 cut(s) 79, 452, 1032
PspPPI RGGWCCY 1 cut(s) 1032
PsuI RGATCY 1 cut(s) 1008
PsyI GACNNNGTC 1 cut(s) 830
RsaI GTAC 2 cut(s) 254, 904
RsaNI GTAC 2 cut(s) 253, 903
RseI CAYNNNNRTG 2 cut(s) 285, 382
SacI GAGCTC 1 cut(s) 261
SacII CCGCGG 1 cut(s) 160
SalI GTCGAC 2 cut(s) 131, 1115
SapI GCTCTTC 2 cut(s) 266, 812
SaqAI TTAA 4 cut(s) 75, 527, 963, 977
SatI GCNGC 5 cut(s) 27, 157, 160, 375, 471
Sau3AI GATC 5 cut(s) 168, 463, 1008, 1018, 1064
Sau96I GGNCC 3 cut(s) 79, 452, 1032
ScaI AGTACT 1 cut(s) 904
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 3 cut(s) 96, 261, 824
Sfr303I CCGCGG 1 cut(s) 160
SgrBI CCGCGG 1 cut(s) 160
SgrDI CGTCGACG 1 cut(s) 131
SinI GGWCC 1 cut(s) 1032
SmiMI CAYNNNNRTG 2 cut(s) 285, 382
Sse9I AATT 5 cut(s) 269, 495, 727, 1001, 1131
SsiI CCGC 5 cut(s) 154, 157, 159, 187, 714
SspMI CTAG 5 cut(s) 843, 864, 995, 1071, 1094
SstI GAGCTC 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 4 cut(s) 21, 842, 863, 1103
TaaI ACNGT 7 cut(s) 122, 211, 460, 678, 830, 872, 986
TaiI ACGT 3 cut(s) 132, 138, 841
TaqI TCGA 7 cut(s) 105, 132, 390, 834, 1047, 1116, 1135
TasI AATT 5 cut(s) 269, 495, 727, 1001, 1131
TatI WGTACW 1 cut(s) 902
TauI GCSGC 2 cut(s) 159, 162
Tru1I TTAA 4 cut(s) 75, 527, 963, 977
Tru9I TTAA 4 cut(s) 75, 527, 963, 977
TscAI CASTG 5 cut(s) 600, 728, 877, 940, 991
TseFI GTSAC 1 cut(s) 986
TseI GCWGC 3 cut(s) 26, 374, 470
Tsp45I GTSAC 1 cut(s) 986
TspDTI ATGAA 4 cut(s) 6, 253, 651, 760
TspRI CASTG 5 cut(s) 600, 728, 877, 940, 991
Tth111I GACNNNGTC 1 cut(s) 830
Van91I CCANNNNNTGG 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 1032
XapI RAATTY 2 cut(s) 1001, 1131
XceI RCATGY 1 cut(s) 633
XmaJI CCTAGG 2 cut(s) 842, 863
XmiI GTMKAC 2 cut(s) 132, 1116
XspI CTAG 5 cut(s) 843, 864, 995, 1071, 1094
ZrmI AGTACT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.