Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009792

Physical Location & Seq

Genomic Coordinates Forward (+)

62605729 .. 62606301

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0511200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGATCCCTTGGCAGAACCCTAATTTGGGTCTCTGTCTCCTCTCATTTGCTCTACTATCTTCCCTCCTTTCCCCAGCAAACTCCCAACATGCATTCTCGACACCACAAGCCTTGTATAGACATGTGTCCCACCACTCCACTGCTGCCGTACTCATCCTCCTCATTGGCGCCACCGACCTCACTCTCCAGAATTCATTCATGGATCAGAAACAAAGCCTCCTACGCCGGAGAGAACGCCTGGATCCTTCCCTTCGGGTCTCCGCCGGAAATCTCGGTAATCTGCTTCTGCTCGTGCACGTTGATCCACACGCTGATGTGCTGCCGGATCTACTTGATAATGCTGCCGGACTTCCCAATCGGATCAAATTCCCTCTCCTCCCGAACCCCTTAAACCCCAGCCTTCTCCGATCGAACCCGTCTCCTACGCTCCCAAACCCAAACAACACTCCTCCTCACCCGACCCGGACCCGGCTCCGCAATCATCAGCACAAACACAACCGCCGCCATCGTCGTACGCGCCTCCTCACGACTCTCCCGACTTGCCGTAGACCAGAGAACACGCCCGGTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000421 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005776 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006897 GO:0006907 GO:0006909 GO:0006914 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016740 GO:0019538 GO:0019776 GO:0019941 GO:0022607 GO:0030163 GO:0030587 GO:0031090 GO:0031154 GO:0032502 GO:0032991 GO:0034274 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0051179 GO:0051234 GO:0051603 GO:0051703 GO:0051704 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0090382 GO:0090702 GO:0098588 GO:0098657 GO:0098805 GO:0099120 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04621 map04136 map04138 map04140 map04621

Pfam Domains

Protein Families

ATG16 WD40

Protein Analysis

190

Amino Acids

21.23

Weight (kDa)

11.6

Isoelectric Point (pI)

58.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50230
fragaria_vesca	FvH4_5g06790 FvH4_5g06790
malus_domestica	MD06G1161200.v1.1 MD14G1166400.v1.1
prunus_persica	Prupe.5G160700_v2.0.a1 Prupe.5G160700_v2.0.a1
pyrus_communis	pycom06g14390 pycom14g13900
rosa_chinensis	RchiOBHm_Chr7g0191761 RchiOBHm_Chr7g0191771
rosa_laevigata	RLG00000004427
rosa_multiflora	Rmu_co8375695.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263550
rosa_rugosa	Rorug06G0511200
rosa_samantha	Rh7AG121000 Rh7BG122700 Rh7CG125600 Rh7DG124300
rosa_wichuraiana	Rw7G010300 Rw7G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	547
AccII	CGCG	1 cut(s)	517
AciI	CCGC	4 cut(s)	261, 475, 499, 502
AclWI	GGATC	6 cut(s)	210, 236, 249, 296, 333, 368
AcsI	RAATTY	2 cut(s)	190, 365
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	2 cut(s)	150, 514
AfiI	CCNNNNNNNGG	3 cut(s)	25, 26, 468
AflIII	ACRYGT	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	237
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	4 cut(s)	35, 41, 262, 423
Alw44I	GTGCAC	1 cut(s)	293
AlwI	GGATC	6 cut(s)	210, 236, 249, 296, 333, 368
ApaLI	GTGCAC	1 cut(s)	293
ApeKI	GCWGC	3 cut(s)	143, 319, 341
ApoI	RAATTY	2 cut(s)	190, 365
Asp700I	GAANNNNTTC	1 cut(s)	194
AspLEI	GCGC	2 cut(s)	170, 519
AspS9I	GGNCC	1 cut(s)	465
AsuC2I	CCSGG	3 cut(s)	463, 469, 564
AsuHPI	GGTGA	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	465
BaeGI	GKGCMC	1 cut(s)	297
BamHI	GGATCC	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	167
BauI	CACGAG	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	3 cut(s)	130, 306, 328
BccI	CCATC	1 cut(s)	513
BceAI	ACGGC	2 cut(s)	131, 528
BciT130I	CCWGG	1 cut(s)	239
BcnI	CCSGG	3 cut(s)	463, 469, 564
BcoDI	GTCTC	4 cut(s)	35, 41, 262, 423
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	4 cut(s)	144, 320, 342, 502
BlsI	GCNGC	4 cut(s)	145, 321, 343, 503
Bme1390I	CCNGG	4 cut(s)	239, 463, 469, 564
Bme18I	GGWCC	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	465
BmiI	GGNNCC	4 cut(s)	169, 243, 467, 473
BmrFI	CCNGG	4 cut(s)	239, 463, 469, 564
BoxI	GACNNNNGTC	1 cut(s)	124
BpmI	CTGGAG	1 cut(s)	170
BpuMI	CCSGG	3 cut(s)	463, 469, 564
BsaHI	GRCGYC	1 cut(s)	168
BsaI	GGTCTC	2 cut(s)	35, 262
BsaJI	CCNNGG	1 cut(s)	8
BsaXI	ACNNNNNCTCC	4 cut(s)	141, 171, 201, 231
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 26, 468
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	153
BseLI	CCNNNNNNNGG	3 cut(s)	25, 26, 468
BseRI	GAGGAG	6 cut(s)	29, 149, 365, 438, 441, 512
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	3 cut(s)	130, 306, 328
BseYI	CCCAGC	2 cut(s)	73, 395
Bsh1236I	CGCG	1 cut(s)	517
Bsh1285I	CGRYCG	1 cut(s)	410
BshNI	GGYRCC	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	7 cut(s)	226, 264, 323, 345, 463, 469, 564
BsiWI	CGTACG	1 cut(s)	512
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	3 cut(s)	25, 26, 468
BsmAI	GTCTC	4 cut(s)	35, 41, 262, 423
BsmBI	CGTCTC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	92
Bso31I	GGTCTC	2 cut(s)	35, 262
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	7 cut(s)	3, 202, 241, 301, 325, 360, 407
BspACI	CCGC	4 cut(s)	261, 475, 499, 502
BspFNI	CGCG	1 cut(s)	517
BspLI	GGNNCC	4 cut(s)	169, 243, 467, 473
BspPI	GGATC	6 cut(s)	210, 236, 249, 296, 333, 368
BspT107I	GGYRCC	1 cut(s)	167
BspTNI	GGTCTC	2 cut(s)	35, 262
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	7 cut(s)	3, 202, 241, 301, 325, 360, 407
BssNI	GRCGYC	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	8
Bst2BI	CACGAG	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	239
BstACI	GRCGYC	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	517
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	2 cut(s)	170, 519
BstKTI	GATC	7 cut(s)	6, 205, 244, 304, 328, 363, 410
BstMAI	GTCTC	4 cut(s)	35, 41, 262, 423
BstMBI	GATC	7 cut(s)	3, 202, 241, 301, 325, 360, 407
BstMCI	CGRYCG	1 cut(s)	410
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNI	CCWGG	1 cut(s)	239
BstNSI	RCATGY	2 cut(s)	92, 125
BstPAI	GACNNNNGTC	1 cut(s)	124
BstSCI	CCNGG	4 cut(s)	237, 461, 467, 562
BstSLI	GKGCMC	1 cut(s)	297
BstUI	CGCG	1 cut(s)	517
BstV1I	GCAGC	3 cut(s)	130, 306, 328
BstX2I	RGATCY	2 cut(s)	241, 325
BstYI	RGATCY	2 cut(s)	241, 325
BtsCI	GGATG	1 cut(s)	153
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
CfoI	GCGC	2 cut(s)	170, 519
Cfr13I	GGNCC	1 cut(s)	465
Csp6I	GTAC	2 cut(s)	149, 513
CspCI	CAANNNNNGTGG	2 cut(s)	93, 128
CviAII	CATG	3 cut(s)	89, 122, 199
CviJI	RGCY	4 cut(s)	110, 216, 399, 472
CviKI_1	RGCY	4 cut(s)	110, 216, 399, 472
CviQI	GTAC	2 cut(s)	149, 513
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	7 cut(s)	5, 204, 243, 303, 327, 362, 409
DpnII	GATC	7 cut(s)	3, 202, 241, 301, 325, 360, 407
EciI	GGCGGA	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	8
Eco31I	GGTCTC	2 cut(s)	35, 262
Eco47I	GGWCC	1 cut(s)	465
EcoRI	GAATTC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	8
EcoT22I	ATGCAT	1 cut(s)	94
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	8
Esp3I	CGTCTC	1 cut(s)	423
FaeI	CATG	3 cut(s)	92, 125, 202
FaiI	YATR	4 cut(s)	90, 117, 123, 200
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	3 cut(s)	88, 121, 198
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	4 cut(s)	144, 320, 342, 502
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	4 cut(s)	144, 320, 342, 502
GlaI	GCGC	2 cut(s)	169, 518
GluI	GCNGC	4 cut(s)	144, 320, 342, 502
GsaI	CCCAGC	2 cut(s)	77, 399
GsuI	CTGGAG	1 cut(s)	170
HaeII	RGCGCY	1 cut(s)	171
HapII	CCGG	7 cut(s)	226, 264, 323, 345, 463, 469, 564
HhaI	GCGC	2 cut(s)	170, 519
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	3 cut(s)	92, 125, 202
Hin6I	GCGC	2 cut(s)	168, 517
HinP1I	GCGC	2 cut(s)	168, 517
HinfI	GANTC	1 cut(s)	529
HpaII	CCGG	7 cut(s)	226, 264, 323, 345, 463, 469, 564
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	2 cut(s)	295, 548
Hpy188I	TCNGA	3 cut(s)	207, 360, 407
Hpy188III	TCNNGA	6 cut(s)	97, 187, 379, 526, 535, 570
Hpy8I	GTNNAC	2 cut(s)	295, 548
Hpy99I	CGWCG	1 cut(s)	513
HpyAV	CCTTC	3 cut(s)	255, 260, 410
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	2 cut(s)	92, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	297
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	3 cut(s)	92, 125, 202
HspAI	GCGC	2 cut(s)	168, 517
KasI	GGCGCC	1 cut(s)	167
Kzo9I	GATC	7 cut(s)	3, 202, 241, 301, 325, 360, 407
LmnI	GCTCC	2 cut(s)	432, 477
Lsp1109I	GCAGC	3 cut(s)	130, 306, 328
MaeII	ACGT	1 cut(s)	297
MalI	GATC	7 cut(s)	5, 204, 243, 303, 327, 362, 409
MboI	GATC	7 cut(s)	3, 202, 241, 301, 325, 360, 407
MboII	GAAGA	1 cut(s)	51
MflI	RGATCY	2 cut(s)	241, 325
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	3 cut(s)	22, 190, 365
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	523
Mph1103I	ATGCAT	1 cut(s)	94
MroXI	GAANNNNTTC	1 cut(s)	194
MseI	TTAA	1 cut(s)	389
MslI	CAYNNNNRTG	1 cut(s)	312
MspI	CCGG	7 cut(s)	226, 264, 323, 345, 463, 469, 564
MspR9I	CCNGG	4 cut(s)	239, 463, 469, 564
Mva1269I	GAATGC	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	517
MwoI	GCNNNNNNNGC	1 cut(s)	222
NarI	GGCGCC	1 cut(s)	168
NciI	CCSGG	3 cut(s)	463, 469, 564
NdeII	GATC	7 cut(s)	3, 202, 241, 301, 325, 360, 407
NlaIII	CATG	3 cut(s)	92, 125, 202
NlaIV	GGNNCC	4 cut(s)	169, 243, 467, 473
NsiI	ATGCAT	1 cut(s)	94
NspI	RCATGY	2 cut(s)	92, 125
PciI	ACATGT	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	2 cut(s)	533, 566
PctI	GAATGC	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	194
Pfl23II	CGTACG	1 cut(s)	512
PkrI	GCNGC	4 cut(s)	145, 321, 343, 503
Ple19I	CGATCG	1 cut(s)	410
PleI	GAGTC	1 cut(s)	523
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	523
PscI	ACATGT	1 cut(s)	121
PshAI	GACNNNNGTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	237
PspFI	CCCAGC	2 cut(s)	73, 395
PspGI	CCWGG	1 cut(s)	237
PspLI	CGTACG	1 cut(s)	512
PspN4I	GGNNCC	4 cut(s)	169, 243, 467, 473
PspPI	GGNCC	1 cut(s)	465
PsuI	RGATCY	2 cut(s)	241, 325
PvuI	CGATCG	1 cut(s)	410
RsaI	GTAC	2 cut(s)	150, 514
RsaNI	GTAC	2 cut(s)	149, 513
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	4 cut(s)	144, 320, 342, 502
Sau3AI	GATC	7 cut(s)	3, 202, 241, 301, 325, 360, 407
Sau96I	GGNCC	1 cut(s)	465
SchI	GAGTC	1 cut(s)	523
ScrFI	CCNGG	4 cut(s)	239, 463, 469, 564
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	2 cut(s)	180, 300
SfoI	GGCGCC	1 cut(s)	169
SinI	GGWCC	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	312
Sse9I	AATT	3 cut(s)	22, 190, 365
SsiI	CCGC	4 cut(s)	261, 475, 499, 502
SspDI	GGCGCC	1 cut(s)	167
StyD4I	CCNGG	4 cut(s)	237, 461, 467, 562
StyI	CCWWGG	1 cut(s)	8
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	2 cut(s)	98, 410
TasI	AATT	3 cut(s)	22, 190, 365
TauI	GCSGC	1 cut(s)	504
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	3 cut(s)	143, 319, 341
TspDTI	ATGAA	2 cut(s)	183, 187
TspRI	CASTG	1 cut(s)	145
VneI	GTGCAC	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	465
XapI	RAATTY	2 cut(s)	190, 365
XceI	RCATGY	2 cut(s)	92, 125
XmiI	GTMKAC	1 cut(s)	547
XmnI	GAANNNNTTC	1 cut(s)	194
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.