Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0009792

Physical Location & Seq

Genomic Coordinates Forward (+)

9727235 .. 9734417

Gene Structure 7183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG125600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2703 bp

ATGGGTGGGGTTACTTCATCCATGGCTGCAAAGCTTGCGTTTTTCCCACCAAACCCACCTTCCTACAAGGTCATTAAGGGCCAGGCAACTGGGCTCTTGCTCATCGACCCTTTTCCCCACCGTGAAAACGTCGACGTTTTGAAGTTTCAGACCCGCCGCGGCAATGAGATCGTGGCCGTTTATGTCCACCACCCAATGGCCACCTCCACCGTTCTGTATTCTCATGGCAACGCTACTGATATAGGCCAGATGTATGAGCTCTTCATTGAATTGAGTATTCACCTGCGTGTCAATCTCATGGGGTATGATTACTCTGGATATGGGCAGTCATCAGGCAAGCCAAGTGAACATAATACTTATGCAGATATTGAAGCTGCATATAAGTGTCTCGAAGAGAGGTATGGTGCCAAGCAGGAGGACATAATCCTCTATGGTCAATCTGTCGGAAGTGGCCCTACTGTTGATCTTGCTGCTCGTTTGCCTCAACTGAGAGCAATTGTTCTGCATAGTCCGATATTATCAGGGTTAAGAGTTATGTATTCTGTGAAGCGCAGTTATTGGTTTGATATCTACAAGAACATTGATAAAATCCCACTGGTGAAATGTCCTGTGCTGGTAATACATGGAACATGTGATGAAGTTGTTGACTGCTCTCACGGCAAGCAACTTTGGCTACTGTGCCAAGAGAAATACGAACCTCTATGGCTCAAAGGCGGAAATCACTGCAATTTGGAACTCTATCCGGAATATATTAGACATCTCAACAAGTTCATATCCACTATTGAAAAAGCGCCTCCATGCAAGTTGAGTTCAAGGAAGAGCACAGACTGTGTCGAATGTCCTAGGCGTAGTGTTGAATATCCTAGGCACAGTGTTGATTACTCTGAGCTTCCGAGGAAGAGTACTGATAAGAGAGAAAAATCAAGGAGAAGCACCGATAGACGACCTGAAAAGCTGAGACTTAATGATTACAAGTTAAATAACAGTGACAAGCTAGAGAAATTTAGGATCTCTGTTGATCAGATAGAGAGGTCCCGAAGGAGCGTCGAATACCACCATGAGAGATCATCTAGGAGAAGCGTTGACCATCAGCTAGAAAAACCAAGGAGAAGTGTAGACTGGCTGGACAGAATTCGAGCTGGCGCCGGCGATTACTATCCGATTCGATCAATTATGTCGCAGGAGGAGGTAGCTAGGAAGGCGATTAAGCACGCGCTGAAGGCTCTAAGGAAGCGGCATTTGCTTGAAGAAGGTGCTCATGCTCCAGCGTATATCGCTCTCGCCAATCCAATTGCTCATCAGGGCTCTGAATGGAAGGAAAAGGCTGATAATTTGGAACTGGAGCTTCAGCAATGCTATAAAGCTCAATCTCGGCTGTCGGAGCAGCTTGTGGTGGAAGTAGCAGAGTCCAGGTCTTCGAAAGCTTTACTTCAGGAGAAAGAAGCAGCTATTGCGGATCAGCAGAATGAGCTGACACAAAAAAGGGATGAGTGCTCTCAGTTGAAGGCGGAGTTAGAAAAGAAGATTCAAGCTCTAGAGTTGGTTATGAGTGAGAACAATGAAATACGGGCGCAGCTAGAAGAAATGTCTGTTAGAGCTAAGAATGCTGAAGCTGAAAATAAGGTGTTAATTGACCGCTGGATGTTGGAAAAAATGAAGGATGCTGAACGCCTAAATGAGGCAAATGCACTATATGAAGAAATGCTTGAGCGGATCAAGGCCAGCGGTTTGCAAAAACTAGCCATGCAGCAAGTAGATGGTGTGGTCCGCCAAAGTGAAGAAGGTGCTGAGTACTTTGTGGAGTCAACCAATCCCACCACATGCAAGAACAGGATCAATGCCCATGACGGTGGCTGTGCTTCCATATTATTCGAGTACAACTCAGGCAAATTGATTTCTGGTGGACAGGATGGGACAATCAAAATGTGGGATACAAGTACAGGGGCTTTGAATAATACACTTCATGGTTGCATTGGTTCTGTTCTTGACCTTACCATTACCCATGATAATAGATCTATCATCGCAGCAAGCAGTTCGAACAAATTGTACGTATGGGATGCTAACTTGGGGAGAGTGCGCCATACTCTCACCGGCCACATGGATAAAGTTTGTGCTGTAGATGTGAGTAAGTTCTCAAGTCGTCACATTGTGAGTGCAGCCTACGATCGTACTATAAAAGTCTGGGATTTGCAAAAAGGTTACTGCACCAACACAATAATCTTCCCCAAACACTGCAATGCTCTTTGCTTCAGCATGGACGGGCAGACCATTTGCTCAGGTCATGTTGATGGGAATCTTCGGCTGTGGGATATTCAGAAAGGAAAGCTACTCAACGAAGTGGCTGCACACTCAAATGCTGTTACGTCTATATCTTTGTCGCGAAGTGGCAACATGGTATTGACGAGTGGGAGGGACAATGTGCATCACCTTTTCGATATGAGAACCCTAGAAGTTTGTGGCACATTGAGAGCCACCGGAAACAGAGTAGCATCTAATTGGAGCCGGTCCTGTATCAGTCCAGATGACAATTACGTTGCTGCTGGATCTGCCGATGGTGCTGTGTATATCTGGTCTATAGCCAAAGGTGACATTGTGAGCACTCTGAAGGAACACACTAATTCTGTCCTTTGCTGCTCATGGAGTGGACATGGAAAACCTCTAGCTTCTGCGGACAAGAATGGAGTAATTTGTACTTGGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000421 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005776 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006897 GO:0006907 GO:0006909 GO:0006914 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016740 GO:0019538 GO:0019776 GO:0019941 GO:0022607 GO:0030163 GO:0030587 GO:0031090 GO:0031154 GO:0032502 GO:0032991 GO:0034274 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0051179 GO:0051234 GO:0051603 GO:0051703 GO:0051704 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0090382 GO:0090702 GO:0098588 GO:0098657 GO:0098805 GO:0099120 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04621 map04136 map04138 map04140 map04621

Pfam Domains

Protein Families

ATG16 WD40

Protein Analysis

900

Amino Acids

101.2

Weight (kDa)

8.33

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	69 - 174	2.5e-07	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	71 - 171	5.3e-06	alpha/beta hydrolase fold
ATG16	PF08614	434 - 559	1.6e-12	Autophagy protein 16 (ATG16)
Beta-prop_WDR5	PF25175	604 - 740	1.6e-23	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	604 - 696	1.3e-11	THOC3 beta-propeller domain
WDR55	PF24796	605 - 814	2e-17	WDR55
WD40_CDC20-Fz	PF24807	606 - 806	2.5e-21	CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd	PF25047	607 - 732	4e-09	TEP-1 second beta-propeller
Beta-prop_SCAP	PF24017	607 - 688	9.1e-06	SCAP Beta-propeller
Beta-prop_WDR3_2nd	PF25172	608 - 686	2.7e-09	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	612 - 740	7.2e-21	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	612 - 763	1.3e-15	WDR36/Utp21 second beta-propeller domain
WD40_Gbeta	PF25391	612 - 706	2.2e-07	G protein beta WD-40 repeat protein
WD40_WDHD1_1st	PF24817	614 - 897	7.7e-29	WDHD1 first WD40 domain
WD40_Prp19	PF24814	618 - 827	4.6e-29	Prp19 WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	627 - 730	6.6e-07	MABP1/WDR62 second WD40 domain
Beta-prop_ACSF4	PF13570	665 - 897	4.8e-08	Beta-alanine-activating enzyme, beta-propeller
WD40_Gbeta	PF25391	669 - 857	1.6e-18	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	670 - 898	9.9e-37	THOC3 beta-propeller domain
Beta-prop_WDR90_POC16_2nd	PF23393	671 - 757	6.8e-06	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	673 - 807	9.3e-11	WDR36/Utp21 first beta-propeller
Beta-prop_EML	PF23409	674 - 812	9.2e-12	Echinoderm microtubule-associated protein first beta-propeller
EIF3I	PF24805	674 - 757	3.5e-08	EIF3I
NBCH_WD40	PF20426	691 - 861	2e-07	Neurobeachin beta propeller domain
WD40	PF00400	691 - 729	3.4e-06	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	694 - 812	2.4e-12	WDR3 second beta-propeller domain
Beta-prop_SCAP	PF24017	709 - 867	6.4e-06	SCAP Beta-propeller
Beta-prop_EML_2	PF23414	713 - 825	4.7e-12	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	713 - 832	1.1e-09	WDR90/POC16, second beta-propeller
WDR55	PF24796	742 - 899	1.9e-13	WDR55
EIF3I	PF24805	745 - 845	2.8e-11	EIF3I
Beta-prop_WDR3_1st	PF25173	745 - 831	6.8e-12	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	746 - 829	2.6e-15	WDR5 beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	747 - 819	3.2e-07	CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	747 - 814	8.6e-07	MABP1/WDR62 second WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	755 - 892	1.6e-08	WDR36/Utp21 second beta-propeller domain
WD40_Gbeta	PF25391	763 - 890	1.5e-06	G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd	PF25047	779 - 864	3.7e-06	TEP-1 second beta-propeller
WDR90_beta-prop_4th	PF23342	833 - 897	3.2e-06	WDR90, 4th beta-propeller
Beta-prop_WDR3_1st	PF25173	836 - 899	8.2e-10	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	837 - 897	1.3e-06	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	837 - 899	7.4e-10	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	838 - 899	2.2e-06	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	839 - 899	3.2e-06	Prp19 WD40 domain
Beta-prop_IFT140_1st	PF23383	840 - 899	1.4e-06	IFT140 first beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50230
fragaria_vesca	FvH4_5g06790 FvH4_5g06790
malus_domestica	MD06G1161200.v1.1 MD14G1166400.v1.1
prunus_persica	Prupe.5G160700_v2.0.a1 Prupe.5G160700_v2.0.a1
pyrus_communis	pycom06g14390 pycom14g13900
rosa_chinensis	RchiOBHm_Chr7g0191761 RchiOBHm_Chr7g0191771
rosa_laevigata	RLG00000004427
rosa_multiflora	Rmu_co8375695.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263550
rosa_rugosa	Rorug06G0511200
rosa_samantha	Rh7AG121000 Rh7BG122700 Rh7CG125600 Rh7DG124300
rosa_wichuraiana	Rw7G010300 Rw7G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	291
Acc36I	ACCTGC	1 cut(s)	291
AccB1I	GGYRCC	2 cut(s)	404, 1142
AccB7I	CCANNNNNTGG	1 cut(s)	196
AccBSI	CCGCTC	1 cut(s)	1711
AccI	GTMKAC	2 cut(s)	132, 1116
AccII	CGCG	3 cut(s)	159, 1214, 2380
AccIII	TCCGGA	1 cut(s)	742
AclWI	GGATC	5 cut(s)	1016, 1464, 1721, 1841, 2551
AcoI	YGGCCR	3 cut(s)	174, 198, 2092
AcsI	RAATTY	2 cut(s)	1001, 1131
AcuI	CTGAAG	6 cut(s)	1238, 1331, 1415, 1629, 2233, 2624
AcyI	GRCGYC	1 cut(s)	1143
AdeI	CACNNNGTG	1 cut(s)	2149
AfaI	GTAC	7 cut(s)	904, 1793, 1877, 1939, 2048, 2170, 2692
AfiI	CCNNNNNNNGG	2 cut(s)	196, 1678
AflIII	ACRYGT	1 cut(s)	629
AjiI	CACGTC	1 cut(s)	2700
AjnI	CCWGG	2 cut(s)	81, 1409
AjuI	GAANNNNNNNTTGG	2 cut(s)	43, 75
AleI	CACNNNNGTG	1 cut(s)	285
Alw21I	GWGCWC	5 cut(s)	261, 824, 1258, 1496, 2600
Alw26I	GTCTC	2 cut(s)	392, 952
AlwI	GGATC	5 cut(s)	1016, 1464, 1721, 1841, 2551
Aor13HI	TCCGGA	1 cut(s)	742
AoxI	GGCC	7 cut(s)	79, 174, 198, 244, 451, 1719, 2092
ApoI	RAATTY	2 cut(s)	1001, 1131
AspA2I	CCTAGG	2 cut(s)	842, 863
AspLEI	GCGC	6 cut(s)	552, 793, 1145, 1216, 1573, 2079
AspS9I	GGNCC	5 cut(s)	79, 452, 1032, 1765, 2505
AsuHPI	GGTGA	5 cut(s)	272, 610, 2080, 2417, 2597
AsuII	TTCGAA	2 cut(s)	1418, 2036
AvaII	GGWCC	3 cut(s)	1032, 1765, 2505
AvrII	CCTAGG	2 cut(s)	842, 863
BalI	TGGCCA	1 cut(s)	200
BanI	GGYRCC	2 cut(s)	404, 1142
BanII	GRGCYC	3 cut(s)	96, 261, 1307
BarI	GAAGNNNNNNTAC	4 cut(s)	245, 277, 439, 471
BbsI	GAAGAC	1 cut(s)	1407
Bbv12I	GWGCWC	5 cut(s)	261, 824, 1258, 1496, 2600
BccI	CCATC	5 cut(s)	1095, 1751, 1904, 2282, 2546
BceAI	ACGGC	2 cut(s)	161, 673
BcgI	CGANNNNNNTGC	6 cut(s)	151, 185, 2016, 2050, 2324, 2358
BciT130I	CCWGG	2 cut(s)	83, 1411
BciVI	GTATCC	1 cut(s)	1924
BclI	TGATCA	1 cut(s)	1018
BcoDI	GTCTC	2 cut(s)	392, 952
BfmI	CTRYAG	2 cut(s)	2115, 2574
BfoI	RGCGCY	2 cut(s)	794, 1146
BfuAI	ACCTGC	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	1924
BglII	AGATCT	1 cut(s)	2012
BlnI	CCTAGG	2 cut(s)	842, 863
BmcAI	AGTACT	2 cut(s)	904, 1793
Bme1390I	CCNGG	2 cut(s)	83, 1411
Bme18I	GGWCC	3 cut(s)	1032, 1765, 2505
BmgBI	CACGTC	1 cut(s)	2700
BmgT120I	GGNCC	5 cut(s)	79, 452, 1032, 1765, 2505
BmiI	GGNNCC	4 cut(s)	406, 1034, 1144, 2501
BmrFI	CCNGG	2 cut(s)	83, 1411
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	4 cut(s)	1651, 2047, 2431, 2498
BmuI	ACTGGG	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	1407
BplI	GAGNNNNNCTC	2 cut(s)	1865, 1897
BpmI	CTGGAG	2 cut(s)	1248, 1361
Bpu10I	CCTNAGC	1 cut(s)	2275
Bpu14I	TTCGAA	2 cut(s)	1418, 2036
BpuEI	CTTGAG	2 cut(s)	1727, 2119
BsaAI	YACGTR	1 cut(s)	2050
BsaBI	GATNNNNATC	2 cut(s)	1155, 2292
BsaHI	GRCGYC	1 cut(s)	1143
BsaJI	CCNNGG	6 cut(s)	21, 157, 842, 863, 893, 1103
BsaWI	WCCGGW	2 cut(s)	742, 2474
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 1678
Bse118I	RCCGGY	3 cut(s)	1145, 2090, 2502
Bse1I	ACTGG	4 cut(s)	94, 600, 1124, 1344
Bse3DI	GCAATG	3 cut(s)	169, 1358, 2242
Bse8I	GATNNNNATC	2 cut(s)	1155, 2292
BseAI	TCCGGA	1 cut(s)	742
BseBI	CCWGG	2 cut(s)	83, 1411
BseDI	CCNNGG	6 cut(s)	21, 157, 842, 863, 893, 1103
BseGI	GGATG	6 cut(s)	17, 1492, 1647, 1666, 1915, 2062
BseJI	GATNNNNATC	2 cut(s)	1155, 2292
BseLI	CCNNNNNNNGG	2 cut(s)	196, 1678
BseMI	GCAATG	3 cut(s)	169, 1358, 2242
BseMII	CTCAG	7 cut(s)	479, 876, 947, 1511, 1779, 1896, 2289
BseNI	ACTGG	4 cut(s)	94, 600, 1124, 1344
BseRI	GAGGAG	1 cut(s)	1199
BsgI	GTGCAG	3 cut(s)	2175, 2188, 2328
Bsh1236I	CGCG	3 cut(s)	159, 1214, 2380
Bsh1285I	CGRYCG	1 cut(s)	2167
BshFI	GGCC	7 cut(s)	81, 176, 200, 246, 453, 1721, 2094
BshNI	GGYRCC	2 cut(s)	404, 1142
BsiEI	CGRYCG	1 cut(s)	2167
BsiHKAI	GWGCWC	5 cut(s)	261, 824, 1258, 1496, 2600
BsiSI	CCGG	5 cut(s)	743, 1146, 2091, 2475, 2503
BslFI	GGGAC	3 cut(s)	1018, 1927, 2426
BslI	CCNNNNNNNGG	2 cut(s)	196, 1678
BsmAI	GTCTC	2 cut(s)	392, 952
BsmFI	GGGAC	3 cut(s)	1018, 1927, 2426
BsmI	GAATGC	1 cut(s)	1609
BsnI	GGCC	7 cut(s)	81, 176, 200, 246, 453, 1721, 2094
Bsp119I	TTCGAA	2 cut(s)	1418, 2036
Bsp1286I	GDGCHC	7 cut(s)	96, 261, 824, 1258, 1307, 1496, 2600
Bsp13I	TCCGGA	1 cut(s)	742
Bsp19I	CCATGG	1 cut(s)	21
Bsp68I	TCGCGA	1 cut(s)	2380
BspANI	GGCC	7 cut(s)	81, 176, 200, 246, 453, 1721, 2094
BspCNI	CTCAG	7 cut(s)	480, 877, 948, 1510, 1780, 1895, 2288
BspEI	TCCGGA	1 cut(s)	742
BspFNI	CGCG	3 cut(s)	159, 1214, 2380
BspLI	GGNNCC	4 cut(s)	406, 1034, 1144, 2501
BspMI	ACCTGC	1 cut(s)	291
BspPI	GGATC	5 cut(s)	1016, 1464, 1721, 1841, 2551
BspQI	GCTCTTC	2 cut(s)	266, 812
BspT104I	TTCGAA	2 cut(s)	1418, 2036
BspT107I	GGYRCC	2 cut(s)	404, 1142
BsrBI	CCGCTC	1 cut(s)	1711
BsrDI	GCAATG	3 cut(s)	169, 1358, 2242
BsrFI	RCCGGY	3 cut(s)	1145, 2090, 2502
BsrI	ACTGG	4 cut(s)	94, 600, 1124, 1344
BssAI	RCCGGY	3 cut(s)	1145, 2090, 2502
BssECI	CCNNGG	6 cut(s)	21, 157, 842, 863, 893, 1103
BssNI	GRCGYC	1 cut(s)	1143
BssT1I	CCWWGG	4 cut(s)	21, 842, 863, 1103
Bst2UI	CCWGG	2 cut(s)	83, 1411
Bst4CI	ACNGT	8 cut(s)	122, 211, 460, 678, 830, 872, 986, 1850
Bst6I	CTCTTC	4 cut(s)	266, 387, 812, 893
BstACI	GRCGYC	1 cut(s)	1143
BstAPI	GCANNNNNTGC	2 cut(s)	35, 1451
BstBAI	YACGTR	1 cut(s)	2050
BstBI	TTCGAA	2 cut(s)	1418, 2036
BstC8I	GCNNGC	8 cut(s)	36, 338, 662, 1141, 1147, 1212, 1723, 2029
BstDEI	CTNAG	9 cut(s)	488, 885, 956, 1226, 1497, 1599, 1788, 1882, 2275
BstDSI	CCRYGG	2 cut(s)	21, 157
BstENI	CCTNNNNNAGG	1 cut(s)	1676
BstF5I	GGATG	6 cut(s)	17, 1492, 1647, 1666, 1915, 2062
BstFNI	CGCG	3 cut(s)	159, 1214, 2380
BstH2I	RGCGCY	2 cut(s)	794, 1146
BstHHI	GCGC	6 cut(s)	552, 793, 1145, 1216, 1573, 2079
BstMAI	GTCTC	2 cut(s)	392, 952
BstMCI	CGRYCG	1 cut(s)	2167
BstNI	CCWGG	2 cut(s)	83, 1411
BstNSI	RCATGY	2 cut(s)	633, 1824
BstSCI	CCNGG	2 cut(s)	81, 1409
BstSFI	CTRYAG	2 cut(s)	2115, 2574
BstSNI	TACGTA	1 cut(s)	2050
BstUI	CGCG	3 cut(s)	159, 1214, 2380
BstV2I	GAAGAC	1 cut(s)	1407
BstX2I	RGATCY	3 cut(s)	1008, 2012, 2543
BstXI	CCANNNNNNTGG	2 cut(s)	89, 1850
BstYI	RGATCY	3 cut(s)	1008, 2012, 2543
BsuI	GTATCC	1 cut(s)	1924
BsuRI	GGCC	7 cut(s)	81, 176, 200, 246, 453, 1721, 2094
BtgI	CCRYGG	2 cut(s)	21, 157
BtgZI	GCGATG	1 cut(s)	2005
BtrI	CACGTC	1 cut(s)	2700
BtsCI	GGATG	6 cut(s)	17, 1492, 1647, 1666, 1915, 2062
BtsI	GCAGTG	2 cut(s)	721, 2230
BtsIMutI	CAGTG	5 cut(s)	593, 721, 877, 991, 2230
BtuMI	TCGCGA	1 cut(s)	2380
BveI	ACCTGC	1 cut(s)	291
Cac8I	GCNNGC	8 cut(s)	36, 338, 662, 1141, 1147, 1212, 1723, 2029
CfoI	GCGC	6 cut(s)	552, 793, 1145, 1216, 1573, 2079
Cfr10I	RCCGGY	3 cut(s)	1145, 2090, 2502
Cfr13I	GGNCC	5 cut(s)	79, 452, 1032, 1765, 2505
Cfr42I	CCGCGG	1 cut(s)	160
CseI	GACGC	1 cut(s)	1033
Csp6I	GTAC	7 cut(s)	903, 1792, 1876, 1938, 2047, 2169, 2691
CviQI	GTAC	7 cut(s)	903, 1792, 1876, 1938, 2047, 2169, 2691
DdeI	CTNAG	9 cut(s)	488, 885, 956, 1226, 1497, 1599, 1788, 1882, 2275
DinI	GGCGCC	1 cut(s)	1144
DraIII	CACNNNGTG	1 cut(s)	2149
EaeI	YGGCCR	3 cut(s)	174, 198, 2092
Eam1104I	CTCTTC	4 cut(s)	266, 387, 812, 893
EarI	CTCTTC	4 cut(s)	266, 387, 812, 893
EciI	GGCGGA	3 cut(s)	729, 1523, 1757
Ecl136II	GAGCTC	1 cut(s)	259
Eco105I	TACGTA	1 cut(s)	2050
Eco130I	CCWWGG	4 cut(s)	21, 842, 863, 1103
Eco24I	GRGCYC	3 cut(s)	96, 261, 1307
Eco32I	GATATC	1 cut(s)	568
Eco47I	GGWCC	3 cut(s)	1032, 1765, 2505
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	6 cut(s)	1238, 1331, 1415, 1629, 2233, 2624
EcoICRI	GAGCTC	1 cut(s)	259
EcoNI	CCTNNNNNAGG	1 cut(s)	1676
EcoO109I	RGGNCCY	1 cut(s)	1032
EcoRI	GAATTC	1 cut(s)	1131
EcoRII	CCWGG	2 cut(s)	81, 1409
EcoRV	GATATC	1 cut(s)	568
EcoT14I	CCWWGG	4 cut(s)	21, 842, 863, 1103
EcoT38I	GRGCYC	3 cut(s)	96, 261, 1307
EgeI	GGCGCC	1 cut(s)	1144
EheI	GGCGCC	1 cut(s)	1144
ErhI	CCWWGG	4 cut(s)	21, 842, 863, 1103
FalI	AAGNNNNNCTT	4 cut(s)	1413, 1445, 1689, 1721
FaqI	GGGAC	3 cut(s)	1018, 1927, 2426
FauI	CCCGC	1 cut(s)	161
FbaI	TGATCA	1 cut(s)	1018
FblI	GTMKAC	2 cut(s)	132, 1116
FokI	GGATG	6 cut(s)	4, 1499, 1654, 1673, 1922, 2069
FriOI	GRGCYC	3 cut(s)	96, 261, 1307
GlaI	GCGC	6 cut(s)	551, 792, 1144, 1215, 1572, 2078
GsuI	CTGGAG	2 cut(s)	1248, 1361
HaeII	RGCGCY	2 cut(s)	794, 1146
HaeIII	GGCC	7 cut(s)	81, 176, 200, 246, 453, 1721, 2094
HapII	CCGG	5 cut(s)	743, 1146, 2091, 2475, 2503
HgaI	GACGC	1 cut(s)	1033
HhaI	GCGC	6 cut(s)	552, 793, 1145, 1216, 1573, 2079
Hin1I	GRCGYC	1 cut(s)	1143
Hin6I	GCGC	6 cut(s)	550, 791, 1143, 1214, 1571, 2077
HinP1I	GCGC	6 cut(s)	550, 791, 1143, 1214, 1571, 2077
HincII	GTYRAC	4 cut(s)	133, 646, 1084, 1806
HindII	GTYRAC	4 cut(s)	133, 646, 1084, 1806
HindIII	AAGCTT	2 cut(s)	32, 1422
HinfI	GANTC	5 cut(s)	1162, 1406, 1525, 1802, 2293
HpaII	CCGG	5 cut(s)	743, 1146, 2091, 2475, 2503
HphI	GGTGA	5 cut(s)	272, 610, 2080, 2417, 2597
Hpy166II	GTNNAC	9 cut(s)	133, 187, 347, 646, 1084, 1117, 1806, 1904, 2645
Hpy188III	TCNNGA	9 cut(s)	315, 389, 743, 1035, 1433, 1535, 1985, 2379, 2519
Hpy8I	GTNNAC	9 cut(s)	133, 187, 347, 646, 1084, 1117, 1806, 1904, 2645
Hpy99I	CGWCG	3 cut(s)	134, 137, 1049
HpyCH4III	ACNGT	8 cut(s)	122, 211, 460, 678, 830, 872, 986, 1850
HpyCH4IV	ACGT	6 cut(s)	129, 135, 2049, 2363, 2532, 2699
HpyF3I	CTNAG	9 cut(s)	488, 885, 956, 1226, 1497, 1599, 1788, 1882, 2275
HpySE526I	ACGT	6 cut(s)	129, 135, 2049, 2363, 2532, 2699
Hsp92I	GRCGYC	1 cut(s)	1143
HspAI	GCGC	6 cut(s)	550, 791, 1143, 1214, 1571, 2077
KasI	GGCGCC	1 cut(s)	1142
Kpn2I	TCCGGA	1 cut(s)	742
KroI	GCCGGC	1 cut(s)	1145
KroNI	GCCGGC	1 cut(s)	1147
Ksp22I	TGATCA	1 cut(s)	1018
KspI	CCGCGG	1 cut(s)	160
LguI	GCTCTTC	2 cut(s)	266, 812
LmnI	GCTCC	5 cut(s)	1041, 1267, 1342, 1381, 2499
LweI	GCATC	4 cut(s)	1651, 2047, 2431, 2498
MaeII	ACGT	6 cut(s)	129, 135, 2049, 2363, 2532, 2699
MaeIII	GTNAC	6 cut(s)	10, 986, 2141, 2198, 2359, 2585
MbiI	CCGCTC	1 cut(s)	1711
MfeI	CAATTG	2 cut(s)	495, 1290
MflI	RGATCY	3 cut(s)	1008, 2012, 2543
MhlI	GDGCHC	7 cut(s)	96, 261, 824, 1258, 1307, 1496, 2600
MlsI	TGGCCA	1 cut(s)	200
MluNI	TGGCCA	1 cut(s)	200
Mly113I	GGCGCC	1 cut(s)	1143
MlyI	GAGTC	2 cut(s)	1415, 1811
MmeI	TCCRAC	3 cut(s)	424, 1359, 1626
Mox20I	TGGCCA	1 cut(s)	200
MreI	CGCCGGCG	1 cut(s)	1145
MroI	TCCGGA	1 cut(s)	742
MroNI	GCCGGC	1 cut(s)	1145
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	6 cut(s)	75, 527, 963, 977, 1206, 1628
MslI	CAYNNNNRTG	6 cut(s)	285, 382, 1848, 2235, 2286, 2352
Msp20I	TGGCCA	1 cut(s)	200
MspA1I	CMGCKG	3 cut(s)	159, 1638, 1725
MspI	CCGG	5 cut(s)	743, 1146, 2091, 2475, 2503
MspR9I	CCNGG	2 cut(s)	83, 1411
MunI	CAATTG	2 cut(s)	495, 1290
Mva1269I	GAATGC	1 cut(s)	1609
MvaI	CCWGG	2 cut(s)	83, 1411
MvnI	CGCG	3 cut(s)	159, 1214, 2380
NaeI	GCCGGC	1 cut(s)	1147
NarI	GGCGCC	1 cut(s)	1143
NcoI	CCATGG	1 cut(s)	21
NgoMIV	GCCGGC	1 cut(s)	1145
NlaIV	GGNNCC	4 cut(s)	406, 1034, 1144, 2501
NmeAIII	GCCGAG	1 cut(s)	1351
NmuCI	GTSAC	3 cut(s)	986, 2141, 2585
NruI	TCGCGA	1 cut(s)	2380
NspI	RCATGY	2 cut(s)	633, 1824
NspV	TTCGAA	2 cut(s)	1418, 2036
OliI	CACNNNNGTG	1 cut(s)	285
PaqCI	CACCTGC	1 cut(s)	291
PciI	ACATGT	1 cut(s)	629
PciSI	GCTCTTC	2 cut(s)	266, 812
PctI	GAATGC	1 cut(s)	1609
PdiI	GCCGGC	1 cut(s)	1147
PfeI	GAWTC	3 cut(s)	1162, 1525, 2293
PflFI	GACNNNGTC	1 cut(s)	830
PflMI	CCANNNNNTGG	1 cut(s)	196
Ple19I	CGATCG	1 cut(s)	2167
PleI	GAGTC	2 cut(s)	1414, 1810
PluTI	GGCGCC	1 cut(s)	1146
PpsI	GAGTC	2 cut(s)	1414, 1810
Ppu21I	YACGTR	1 cut(s)	2050
PpuMI	RGGWCCY	1 cut(s)	1032
PscI	ACATGT	1 cut(s)	629
Psp124BI	GAGCTC	1 cut(s)	261
Psp5II	RGGWCCY	1 cut(s)	1032
Psp6I	CCWGG	2 cut(s)	81, 1409
PspGI	CCWGG	2 cut(s)	81, 1409
PspN4I	GGNNCC	4 cut(s)	406, 1034, 1144, 2501
PspPI	GGNCC	5 cut(s)	79, 452, 1032, 1765, 2505
PspPPI	RGGWCCY	1 cut(s)	1032
PsrI	GAACNNNNNNTAC	2 cut(s)	2030, 2062
PsuI	RGATCY	3 cut(s)	1008, 2012, 2543
PsyI	GACNNNGTC	1 cut(s)	830
PvuI	CGATCG	1 cut(s)	2167
RruI	TCGCGA	1 cut(s)	2380
RsaI	GTAC	7 cut(s)	904, 1793, 1877, 1939, 2048, 2170, 2692
RsaNI	GTAC	7 cut(s)	903, 1792, 1876, 1938, 2047, 2169, 2691
RseI	CAYNNNNRTG	6 cut(s)	285, 382, 1848, 2235, 2286, 2352
SacI	GAGCTC	1 cut(s)	261
SacII	CCGCGG	1 cut(s)	160
SalI	GTCGAC	1 cut(s)	131
SapI	GCTCTTC	2 cut(s)	266, 812
SaqAI	TTAA	6 cut(s)	75, 527, 963, 977, 1206, 1628
Sau96I	GGNCC	5 cut(s)	79, 452, 1032, 1765, 2505
ScaI	AGTACT	2 cut(s)	904, 1793
SchI	GAGTC	2 cut(s)	1415, 1811
ScrFI	CCNGG	2 cut(s)	83, 1411
SduI	GDGCHC	7 cut(s)	96, 261, 824, 1258, 1307, 1496, 2600
SfaNI	GCATC	4 cut(s)	1651, 2047, 2431, 2498
SfcI	CTRYAG	2 cut(s)	2115, 2574
SfoI	GGCGCC	1 cut(s)	1144
Sfr303I	CCGCGG	1 cut(s)	160
SfuI	TTCGAA	2 cut(s)	1418, 2036
SgrAI	CRCCGGYG	1 cut(s)	1145
SgrBI	CCGCGG	1 cut(s)	160
SgrDI	CGTCGACG	1 cut(s)	131
SinI	GGWCC	3 cut(s)	1032, 1765, 2505
SmiMI	CAYNNNNRTG	6 cut(s)	285, 382, 1848, 2235, 2286, 2352
SmlI	CTYRAG	2 cut(s)	1706, 2134
SmoI	CTYRAG	2 cut(s)	1706, 2134
SnaBI	TACGTA	1 cut(s)	2050
SspDI	GGCGCC	1 cut(s)	1142
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	2 cut(s)	81, 1409
StyI	CCWWGG	4 cut(s)	21, 842, 863, 1103
TaaI	ACNGT	8 cut(s)	122, 211, 460, 678, 830, 872, 986, 1850
TaiI	ACGT	6 cut(s)	132, 138, 2052, 2366, 2535, 2702
TatI	WGTACW	5 cut(s)	902, 1791, 1875, 1937, 2690
TauI	GCSGC	3 cut(s)	159, 162, 1237
TfiI	GAWTC	3 cut(s)	1162, 1525, 2293
Tru1I	TTAA	6 cut(s)	75, 527, 963, 977, 1206, 1628
Tru9I	TTAA	6 cut(s)	75, 527, 963, 977, 1206, 1628
TscAI	CASTG	5 cut(s)	600, 728, 877, 991, 2237
TseFI	GTSAC	3 cut(s)	986, 2141, 2585
Tsp45I	GTSAC	3 cut(s)	986, 2141, 2585
TspDTI	ATGAA	8 cut(s)	6, 253, 651, 760, 1575, 1670, 1710, 1952
TspRI	CASTG	5 cut(s)	600, 728, 877, 991, 2237
Tth111I	GACNNNGTC	1 cut(s)	830
Van91I	CCANNNNNTGG	1 cut(s)	196
VpaK11BI	GGWCC	3 cut(s)	1032, 1765, 2505
XagI	CCTNNNNNAGG	1 cut(s)	1676
XapI	RAATTY	2 cut(s)	1001, 1131
XbaI	TCTAGA	1 cut(s)	1534
XceI	RCATGY	2 cut(s)	633, 1824
XmaJI	CCTAGG	2 cut(s)	842, 863
XmiI	GTMKAC	2 cut(s)	132, 1116
ZrmI	AGTACT	2 cut(s)	904, 1793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.