Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007236

Physical Location & Seq

Genomic Coordinates Reverse (-)

17105059 .. 17108539

Gene Structure 3481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G218900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAACGTTGCTGCTTCTCTATCATCTATCGCCACCGTTCGCTTCCCCAATTGCCACCGCTGTTTTCGCTCCTCAAAAACCCTAATTCCATCTTCGTCGCTTCGGATAATGTCTCAATTCTCGTCATCACCCTCCGCCTCATCTGCGCCGCCAATGAGCTCGAACACGGCGGCTGTCGAATCCAAGAAGCCGCCCAAGCAGCCGTGGCTCATCGTAGGCCTTGGAAACCCCGGAAAGAAATACCACAGCACTCGCCACAATGTGGGTTTTGAGATGGTGGATGCTATAGCTGAAGCTGAAGGGATATCATTGAGCAGTGTTTCTTTCAAAGCCCTGGTCGGAAAAGGCCTTATTGGGGATGTTCCAGTTATATTTGCCAAACCACAAACTTTCATGAATAAAAGCGGTGAGTCAGTTGGATCCATTGTTTCGTATTACAAGATTCCATTGAAGCAAGTACTTGTGATCTTTGATGATCTAGATCTCCCTTTTGCAAAACTGCGGCTGTTGCCAAAAGGTGGACATGGAGGGCACAATGGGATGAGGAGTGTCATTGATCACTTTAAAGGGAGTCGAGATTTTCCTCGTTTAAGAATCGGCATTGGACGGCCTCCTGGGAAAATGGATCCTGTGAACTTTGTTCTTCGTCCCTTTACTAAACAAGAACTTGAAGAGTTGAATTTTACGTTTCAAGATGGCGTAGAAGCGGTGCGTATTCTTTTGCTCGAGGGGTTCAACAAAAGCGCAACATTTGTTAATAGTGCCAAACCCTTGGAACAATGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004045 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0052689 GO:0140098 GO:0140101

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pept_tRNA_hydro

Protein Analysis

263

Amino Acids

28.45

Weight (kDa)

9.79

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18440 AT1G18440
fragaria_vesca	FvH4_5g12500 FvH4_5g12500 FvH4_5g12500 FvH4_5g12500 FvH4_5g12500
malus_domestica	MD06G1212500.v1.1 MD14G1223800.v1.1
prunus_persica	Prupe.5G218900_v2.0.a1 Prupe.5G218900_v2.0.a1
pyrus_communis	pycom06g19010 pycom14g18500
rosa_chinensis	RchiOBHm_Chr7g0184851
rosa_laevigata	RLG00000004949
rosa_multiflora	Rmu_sc0018428.1_g000001 Rmu_sc0040795.1_g000001 Rmu_ssc0000289.1_g000013
rosa_roxburghii	Rroxscaffold_3G00269330
rosa_rugosa	Rorug06G0465400
rosa_samantha	Rh7AG077500 Rh7BG069800 Rh7CG070600 Rh7DG070000
rosa_wichuraiana	Rw7G005790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	262, 518
AciI	CCGC	8 cut(s)	58, 135, 149, 170, 191, 405, 502, 707
AclI	AACGTT	1 cut(s)	6
AclWI	GGATC	4 cut(s)	414, 427, 620, 633
AcsI	RAATTY	1 cut(s)	679
AcuI	CTGAAG	2 cut(s)	312, 318
AdeI	CACNNNGTG	1 cut(s)	262
AfaI	GTAC	1 cut(s)	459
AfiI	CCNNNNNNNGG	3 cut(s)	262, 355, 518
AgsI	TTSAA	6 cut(s)	328, 451, 671, 679, 692, 736
AjnI	CCWGG	2 cut(s)	333, 613
AluBI	AGCT	3 cut(s)	159, 290, 296
AluI	AGCT	3 cut(s)	159, 290, 296
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	4 cut(s)	414, 427, 620, 633
Ama87I	CYCGRG	1 cut(s)	725
AoxI	GGCC	3 cut(s)	217, 346, 608
ApeKI	GCWGC	2 cut(s)	11, 199
ApoI	RAATTY	1 cut(s)	679
ArsI	GACNNNNNNTTYG	2 cut(s)	321, 353
AspLEI	GCGC	2 cut(s)	148, 746
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	2 cut(s)	120, 419
AvaI	CYCGRG	1 cut(s)	725
BaeGI	GKGCMC	1 cut(s)	534
BamHI	GGATCC	2 cut(s)	419, 625
BanII	GRGCYC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	3 cut(s)	97, 268, 689
BceAI	ACGGC	3 cut(s)	183, 187, 623
BciT130I	CCWGG	2 cut(s)	335, 615
BclI	TGATCA	1 cut(s)	556
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	479
BfmI	CTRYAG	1 cut(s)	285
BglII	AGATCT	1 cut(s)	481
BisI	GCNGC	6 cut(s)	12, 149, 171, 191, 200, 503
BlsI	GCNGC	6 cut(s)	13, 150, 172, 192, 201, 504
BmcAI	AGTACT	1 cut(s)	459
Bme1390I	CCNGG	3 cut(s)	231, 335, 615
BmeT110I	CYCGRG	1 cut(s)	725
BmiI	GGNNCC	2 cut(s)	421, 627
BmrFI	CCNGG	3 cut(s)	231, 335, 615
BmsI	GCATC	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	480
BsaJI	CCNNGG	6 cut(s)	203, 220, 229, 333, 614, 771
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 355, 518
Bse1I	ACTGG	1 cut(s)	365
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	2 cut(s)	335, 615
BseDI	CCNNGG	6 cut(s)	203, 220, 229, 333, 614, 771
BseGI	GGATG	3 cut(s)	286, 364, 546
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	3 cut(s)	262, 355, 518
BseNI	ACTGG	1 cut(s)	365
BseRI	GAGGAG	2 cut(s)	61, 559
BseSI	GKGCMC	1 cut(s)	534
BseXI	GCAGC	1 cut(s)	211
BshFI	GGCC	3 cut(s)	219, 348, 610
BsiHKAI	GWGCWC	1 cut(s)	161
BsiHKCI	CYCGRG	1 cut(s)	725
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	633
BslI	CCNNNNNNNGG	3 cut(s)	262, 355, 518
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	633
BsnI	GGCC	3 cut(s)	219, 348, 610
BsoBI	CYCGRG	1 cut(s)	725
Bsp1286I	GDGCHC	2 cut(s)	161, 534
Bsp143I	GATC	6 cut(s)	419, 465, 475, 481, 556, 625
BspACI	CCGC	8 cut(s)	58, 135, 149, 170, 191, 405, 502, 707
BspANI	GGCC	3 cut(s)	219, 348, 610
BspHI	TCATGA	1 cut(s)	393
BspLI	GGNNCC	2 cut(s)	421, 627
BspPI	GGATC	4 cut(s)	414, 427, 620, 633
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	6 cut(s)	203, 220, 229, 333, 614, 771
BssMI	GATC	6 cut(s)	419, 465, 475, 481, 556, 625
BssT1I	CCWWGG	2 cut(s)	220, 771
Bst2UI	CCWGG	2 cut(s)	335, 615
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	666
BstDSI	CCRYGG	1 cut(s)	203
BstF5I	GGATG	3 cut(s)	286, 364, 546
BstHHI	GCGC	2 cut(s)	148, 746
BstKTI	GATC	6 cut(s)	422, 468, 478, 484, 559, 628
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	6 cut(s)	419, 465, 475, 481, 556, 625
BstMWI	GCNNNNNNNGC	6 cut(s)	66, 143, 196, 199, 205, 508
BstNI	CCWGG	2 cut(s)	335, 615
BstSCI	CCNGG	3 cut(s)	229, 333, 613
BstSFI	CTRYAG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	534
BstV1I	GCAGC	1 cut(s)	211
BstX2I	RGATCY	3 cut(s)	419, 481, 625
BstXI	CCANNNNNNTGG	1 cut(s)	772
BstYI	RGATCY	3 cut(s)	419, 481, 625
BsuRI	GGCC	3 cut(s)	219, 348, 610
BtgI	CCRYGG	1 cut(s)	203
BtsCI	GGATG	3 cut(s)	286, 364, 546
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	322
CciI	TCATGA	1 cut(s)	393
CfoI	GCGC	2 cut(s)	148, 746
Csp6I	GTAC	1 cut(s)	458
CviAII	CATG	2 cut(s)	394, 524
CviQI	GTAC	1 cut(s)	458
DpnI	GATC	6 cut(s)	421, 467, 477, 483, 558, 627
DpnII	GATC	6 cut(s)	419, 465, 475, 481, 556, 625
DraI	TTTAAA	1 cut(s)	565
DraIII	CACNNNGTG	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	666
EarI	CTCTTC	1 cut(s)	666
EciI	GGCGGA	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	220, 771
Eco147I	AGGCCT	2 cut(s)	219, 348
Eco24I	GRGCYC	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	306
Eco53kI	GAGCTC	1 cut(s)	159
Eco57I	CTGAAG	2 cut(s)	312, 318
Eco88I	CYCGRG	1 cut(s)	725
EcoICRI	GAGCTC	1 cut(s)	159
EcoRII	CCWGG	2 cut(s)	333, 613
EcoRV	GATATC	1 cut(s)	306
EcoT14I	CCWWGG	2 cut(s)	220, 771
EcoT38I	GRGCYC	1 cut(s)	161
ErhI	CCWWGG	2 cut(s)	220, 771
FaeI	CATG	2 cut(s)	397, 527
FaiI	YATR	4 cut(s)	287, 371, 395, 525
FaqI	GGGAC	1 cut(s)	633
FatI	CATG	2 cut(s)	393, 523
FbaI	TGATCA	1 cut(s)	556
Fnu4HI	GCNGC	6 cut(s)	12, 149, 171, 191, 200, 503
FokI	GGATG	3 cut(s)	293, 371, 553
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	6 cut(s)	12, 149, 171, 191, 200, 503
FspBI	CTAG	1 cut(s)	479
GlaI	GCGC	2 cut(s)	147, 745
GluI	GCNGC	6 cut(s)	12, 149, 171, 191, 200, 503
HaeIII	GGCC	3 cut(s)	219, 348, 610
HapII	CCGG	1 cut(s)	231
HhaI	GCGC	2 cut(s)	148, 746
Hin1II	CATG	2 cut(s)	397, 527
Hin6I	GCGC	2 cut(s)	146, 744
HinP1I	GCGC	2 cut(s)	146, 744
HinfI	GANTC	5 cut(s)	179, 410, 442, 571, 594
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	2 cut(s)	120, 419
Hpy166II	GTNNAC	2 cut(s)	521, 634
Hpy188I	TCNGA	2 cut(s)	105, 341
Hpy188III	TCNNGA	4 cut(s)	394, 479, 575, 692
Hpy8I	GTNNAC	2 cut(s)	521, 634
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	2 cut(s)	6, 686
HpyCH4V	TGCA	1 cut(s)	494
HpyF10VI	GCNNNNNNNGC	6 cut(s)	66, 143, 196, 199, 205, 508
HpySE526I	ACGT	2 cut(s)	6, 686
Hsp92II	CATG	2 cut(s)	397, 527
HspAI	GCGC	2 cut(s)	146, 744
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	6 cut(s)	419, 465, 475, 481, 556, 625
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	7 cut(s)	244, 320, 347, 378, 600, 627, 642
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	2 cut(s)	6, 686
MalI	GATC	6 cut(s)	421, 467, 477, 483, 558, 627
MboI	GATC	6 cut(s)	419, 465, 475, 481, 556, 625
MboII	GAAGA	3 cut(s)	84, 635, 683
MfeI	CAATTG	1 cut(s)	49
MflI	RGATCY	3 cut(s)	419, 481, 625
MhlI	GDGCHC	2 cut(s)	161, 534
MluCI	AATT	4 cut(s)	49, 84, 116, 679
MlyI	GAGTC	2 cut(s)	419, 580
MmeI	TCCRAC	2 cut(s)	319, 397
MnlI	CCTC	8 cut(s)	82, 142, 148, 521, 537, 594, 621, 721
MseI	TTAA	4 cut(s)	564, 590, 756, 787
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	3 cut(s)	231, 335, 615
MunI	CAATTG	1 cut(s)	49
MvaI	CCWGG	2 cut(s)	335, 615
MwoI	GCNNNNNNNGC	6 cut(s)	66, 143, 196, 199, 205, 508
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	6 cut(s)	419, 465, 475, 481, 556, 625
NlaIII	CATG	2 cut(s)	397, 527
NlaIV	GGNNCC	2 cut(s)	421, 627
PaeR7I	CTCGAG	1 cut(s)	725
PagI	TCATGA	1 cut(s)	393
PceI	AGGCCT	2 cut(s)	219, 348
PfeI	GAWTC	3 cut(s)	179, 442, 594
PflMI	CCANNNNNTGG	2 cut(s)	262, 518
PkrI	GCNGC	6 cut(s)	13, 150, 172, 192, 201, 504
PleI	GAGTC	2 cut(s)	418, 579
PpsI	GAGTC	2 cut(s)	418, 579
Psp124BI	GAGCTC	1 cut(s)	161
Psp1406I	AACGTT	1 cut(s)	6
Psp6I	CCWGG	2 cut(s)	333, 613
PspGI	CCWGG	2 cut(s)	333, 613
PspN4I	GGNNCC	2 cut(s)	421, 627
PspXI	VCTCGAGB	1 cut(s)	725
PsuI	RGATCY	3 cut(s)	419, 481, 625
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
SacI	GAGCTC	1 cut(s)	161
SaqAI	TTAA	4 cut(s)	564, 590, 756, 787
SatI	GCNGC	6 cut(s)	12, 149, 171, 191, 200, 503
Sau3AI	GATC	6 cut(s)	419, 465, 475, 481, 556, 625
ScaI	AGTACT	1 cut(s)	459
SchI	GAGTC	2 cut(s)	419, 580
ScrFI	CCNGG	3 cut(s)	231, 335, 615
SduI	GDGCHC	2 cut(s)	161, 534
SetI	ASST	6 cut(s)	9, 161, 292, 298, 520, 689
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	285
Sfr274I	CTCGAG	1 cut(s)	725
SlaI	CTCGAG	1 cut(s)	725
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
Sse9I	AATT	4 cut(s)	49, 84, 116, 679
SseBI	AGGCCT	2 cut(s)	219, 348
SsiI	CCGC	8 cut(s)	58, 135, 149, 170, 191, 405, 502, 707
SspMI	CTAG	1 cut(s)	479
SstI	GAGCTC	1 cut(s)	161
StuI	AGGCCT	2 cut(s)	219, 348
StyD4I	CCNGG	3 cut(s)	229, 333, 613
StyI	CCWWGG	2 cut(s)	220, 771
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	2 cut(s)	9, 689
TaqI	TCGA	4 cut(s)	161, 177, 574, 726
TasI	AATT	4 cut(s)	49, 84, 116, 679
TatI	WGTACW	1 cut(s)	457
TauI	GCSGC	4 cut(s)	151, 173, 193, 505
TfiI	GAWTC	3 cut(s)	179, 442, 594
Tru1I	TTAA	4 cut(s)	564, 590, 756, 787
Tru9I	TTAA	4 cut(s)	564, 590, 756, 787
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	2 cut(s)	11, 199
TspDTI	ATGAA	3 cut(s)	17, 382, 410
TspRI	CASTG	1 cut(s)	322
Van91I	CCANNNNNTGG	2 cut(s)	262, 518
XapI	RAATTY	1 cut(s)	679
XbaI	TCTAGA	1 cut(s)	478
XhoI	CTCGAG	1 cut(s)	725
XspI	CTAG	1 cut(s)	479
ZrmI	AGTACT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.