Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007236

Physical Location & Seq

Genomic Coordinates Reverse (-)

20136595 .. 20138459

Gene Structure 1865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g18500.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAACGTTGCTGCTTCCCTATCATCCATCGCCACCGTCCGCTTCCCCAATTGCCACCGCTGCTTCCGCTTCTCAAAACCCCTACTTCGATCTCCGTCGCTTCAGATAATGTCCCAATTCTCGTCATCACCATCTCCCTCTGCCGCATCCGCGGCGCCAGTGAGCTCGGACACGGCGCCTGTCGAAACCAAGAAGCCGCCCAAGCAGCCGTGGCTCATCGTCGGACTCGGAAACCCCGGGAAGAAGTACAACAGCACCCGCCACAATGTGGGTTTTGAGATGGTAGATGCCATAGCTGAAGCTGAAGGGATACCTTTGAGCAGTGTTTCTTTCAAAGCCCTTGTTGGAAAAGGCCTTATTGGCGATGTCCCGGTTATATTTGCCAAGCCACAAACTTACATGAATAAAAGCGGTGAGTCTGTTGGATCGATTGTTTCATATTACAAGATTCCATTGAAGCAAGTGCTTGTGATATTTGATGATCTAGATCTTCCCTTTGGAAAACTGCGGATGTTGCCAAAAGGTGGACACGGAGGACACAATGGGATGAGGAGTATCATTGATCACTTTAAAGGGAGTCGAGATTTTCCTCGCTTAAGAATCGGCATTGGACGTCCTCCTGGGAAAATGGATCCTGTCAACTTTGTTCTTCGTCCATTTACTAAACAAGAACAACAAGAGTTGAATTTTACGTTTCAAGATGGTGTAGAAGCGGTGCGTATTCTTTTGCTCGAGGGGTTCAACAAAAGCGCAACATTCGTTAATACTGCCAAACCCTTGGAACAATGCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004045 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0052689 GO:0140098 GO:0140101

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pept_tRNA_hydro

Protein Analysis

265

Amino Acids

28.74

Weight (kDa)

9.76

Isoelectric Point (pI)

50.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18440 AT1G18440
fragaria_vesca	FvH4_5g12500 FvH4_5g12500 FvH4_5g12500 FvH4_5g12500 FvH4_5g12500
malus_domestica	MD06G1212500.v1.1 MD14G1223800.v1.1
prunus_persica	Prupe.5G218900_v2.0.a1 Prupe.5G218900_v2.0.a1
pyrus_communis	pycom06g19010 pycom14g18500
rosa_chinensis	RchiOBHm_Chr7g0184851
rosa_laevigata	RLG00000004949
rosa_multiflora	Rmu_sc0018428.1_g000001 Rmu_sc0040795.1_g000001 Rmu_ssc0000289.1_g000013
rosa_roxburghii	Rroxscaffold_3G00269330
rosa_rugosa	Rorug06G0465400
rosa_samantha	Rh7AG077500 Rh7BG069800 Rh7CG070600 Rh7DG070000
rosa_wichuraiana	Rw7G005790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	616
AccB1I	GGYRCC	2 cut(s)	154, 175
AccB7I	CCANNNNNTGG	2 cut(s)	268, 524
AccII	CGCG	1 cut(s)	152
AclI	AACGTT	1 cut(s)	6
AclWI	GGATC	3 cut(s)	433, 626, 639
AcsI	RAATTY	1 cut(s)	685
AcuI	CTGAAG	3 cut(s)	86, 318, 324
AcyI	GRCGYC	3 cut(s)	155, 176, 613
AdeI	CACNNNGTG	1 cut(s)	268
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	268, 524
AflII	CTTAAG	1 cut(s)	595
AgsI	TTSAA	5 cut(s)	334, 457, 685, 698, 742
AjnI	CCWGG	1 cut(s)	619
AluBI	AGCT	3 cut(s)	165, 296, 302
AluI	AGCT	3 cut(s)	165, 296, 302
Alw21I	GWGCWC	1 cut(s)	167
AlwI	GGATC	3 cut(s)	433, 626, 639
Ama87I	CYCGRG	2 cut(s)	236, 731
AoxI	GGCC	1 cut(s)	352
ApeKI	GCWGC	3 cut(s)	11, 60, 205
ApoI	RAATTY	1 cut(s)	685
AspLEI	GCGC	3 cut(s)	157, 178, 752
AsuC2I	CCSGG	3 cut(s)	237, 238, 371
AsuHPI	GGTGA	2 cut(s)	120, 425
AvaI	CYCGRG	2 cut(s)	236, 731
BamHI	GGATCC	1 cut(s)	631
BanI	GGYRCC	2 cut(s)	154, 175
BanII	GRGCYC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	47, 217
BccI	CCATC	4 cut(s)	35, 139, 274, 695
BceAI	ACGGC	2 cut(s)	189, 193
BciT130I	CCWGG	1 cut(s)	621
BciVI	GTATCC	1 cut(s)	303
BclI	TGATCA	1 cut(s)	562
BcnI	CCSGG	3 cut(s)	237, 238, 371
BfaI	CTAG	1 cut(s)	485
BfoI	RGCGCY	2 cut(s)	158, 179
BfrI	CTTAAG	1 cut(s)	595
BfuI	GTATCC	1 cut(s)	303
BglI	GCCNNNNNGGC	1 cut(s)	360
BglII	AGATCT	1 cut(s)	487
BisI	GCNGC	6 cut(s)	12, 61, 144, 153, 197, 206
BlsI	GCNGC	6 cut(s)	13, 62, 145, 154, 198, 207
Bme1390I	CCNGG	4 cut(s)	237, 238, 371, 621
BmeT110I	CYCGRG	2 cut(s)	236, 731
BmiI	GGNNCC	3 cut(s)	156, 177, 633
BmrFI	CCNGG	4 cut(s)	237, 238, 371, 621
BmsI	GCATC	2 cut(s)	155, 277
BpuMI	CCSGG	3 cut(s)	237, 238, 371
Bsa29I	ATCGAT	1 cut(s)	428
BsaBI	GATNNNNATC	1 cut(s)	486
BsaHI	GRCGYC	3 cut(s)	155, 176, 613
BsaJI	CCNNGG	6 cut(s)	150, 209, 235, 236, 620, 777
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 524
Bse1I	ACTGG	1 cut(s)	158
Bse8I	GATNNNNATC	1 cut(s)	486
BseBI	CCWGG	1 cut(s)	621
BseCI	ATCGAT	1 cut(s)	428
BseDI	CCNNGG	6 cut(s)	150, 209, 235, 236, 620, 777
BseGI	GGATG	4 cut(s)	23, 146, 516, 552
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	2 cut(s)	268, 524
BseNI	ACTGG	1 cut(s)	158
BseRI	GAGGAG	1 cut(s)	565
BseXI	GCAGC	2 cut(s)	47, 217
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	354
BshNI	GGYRCC	2 cut(s)	154, 175
BshVI	ATCGAT	1 cut(s)	428
BsiHKAI	GWGCWC	1 cut(s)	167
BsiHKCI	CYCGRG	2 cut(s)	236, 731
BsiSI	CCGG	2 cut(s)	237, 371
BslFI	GGGAC	2 cut(s)	97, 353
BslI	CCNNNNNNNGG	2 cut(s)	268, 524
BsmFI	GGGAC	2 cut(s)	97, 353
BsnI	GGCC	1 cut(s)	354
BsoBI	CYCGRG	2 cut(s)	236, 731
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	6 cut(s)	89, 425, 481, 487, 562, 631
BspANI	GGCC	1 cut(s)	354
BspDI	ATCGAT	1 cut(s)	428
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	3 cut(s)	156, 177, 633
BspPI	GGATC	3 cut(s)	433, 626, 639
BspT107I	GGYRCC	2 cut(s)	154, 175
BspTI	CTTAAG	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	6 cut(s)	150, 209, 235, 236, 620, 777
BssMI	GATC	6 cut(s)	89, 425, 481, 487, 562, 631
BssNI	GRCGYC	3 cut(s)	155, 176, 613
BssT1I	CCWWGG	1 cut(s)	777
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	1 cut(s)	37
BstACI	GRCGYC	3 cut(s)	155, 176, 613
BstAFI	CTTAAG	1 cut(s)	595
BstDSI	CCRYGG	2 cut(s)	150, 209
BstF5I	GGATG	4 cut(s)	23, 146, 516, 552
BstFNI	CGCG	1 cut(s)	152
BstH2I	RGCGCY	2 cut(s)	158, 179
BstHHI	GCGC	3 cut(s)	157, 178, 752
BstKTI	GATC	6 cut(s)	92, 428, 484, 490, 565, 634
BstMBI	GATC	6 cut(s)	89, 425, 481, 487, 562, 631
BstMWI	GCNNNNNNNGC	9 cut(s)	60, 66, 149, 152, 202, 205, 211, 360, 514
BstNI	CCWGG	1 cut(s)	621
BstSCI	CCNGG	4 cut(s)	235, 236, 369, 619
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	47, 217
BstX2I	RGATCY	2 cut(s)	487, 631
BstXI	CCANNNNNNTGG	1 cut(s)	778
BstYI	RGATCY	2 cut(s)	487, 631
Bsu15I	ATCGAT	1 cut(s)	428
BsuI	GTATCC	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	354
BsuTUI	ATCGAT	1 cut(s)	428
BtgI	CCRYGG	2 cut(s)	150, 209
BtgZI	GCGATG	2 cut(s)	13, 378
BtsCI	GGATG	4 cut(s)	23, 146, 516, 552
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	2 cut(s)	165, 328
CfoI	GCGC	3 cut(s)	157, 178, 752
Cfr42I	CCGCGG	1 cut(s)	153
Cfr9I	CCCGGG	1 cut(s)	236
ClaI	ATCGAT	1 cut(s)	428
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	1 cut(s)	400
CviJI	RGCY	9 cut(s)	165, 196, 208, 214, 296, 302, 338, 354, 388
CviKI_1	RGCY	9 cut(s)	165, 196, 208, 214, 296, 302, 338, 354, 388
CviQI	GTAC	1 cut(s)	247
DinI	GGCGCC	2 cut(s)	156, 177
DpnI	GATC	6 cut(s)	91, 427, 483, 489, 564, 633
DpnII	GATC	6 cut(s)	89, 425, 481, 487, 562, 631
DraI	TTTAAA	1 cut(s)	571
DraIII	CACNNNGTG	1 cut(s)	268
Ecl136II	GAGCTC	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	777
Eco147I	AGGCCT	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	167
Eco53kI	GAGCTC	1 cut(s)	165
Eco57I	CTGAAG	3 cut(s)	86, 318, 324
Eco88I	CYCGRG	2 cut(s)	236, 731
EcoICRI	GAGCTC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	777
EcoT38I	GRGCYC	1 cut(s)	167
EgeI	GGCGCC	2 cut(s)	156, 177
EheI	GGCGCC	2 cut(s)	156, 177
ErhI	CCWWGG	1 cut(s)	777
FaeI	CATG	1 cut(s)	403
FaiI	YATR	4 cut(s)	293, 377, 401, 439
FaqI	GGGAC	2 cut(s)	97, 353
FatI	CATG	1 cut(s)	399
FauI	CCCGC	1 cut(s)	266
FbaI	TGATCA	1 cut(s)	562
Fnu4HI	GCNGC	6 cut(s)	12, 61, 144, 153, 197, 206
FokI	GGATG	4 cut(s)	10, 133, 523, 559
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	6 cut(s)	12, 61, 144, 153, 197, 206
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	3 cut(s)	156, 177, 751
GluI	GCNGC	6 cut(s)	12, 61, 144, 153, 197, 206
HaeII	RGCGCY	2 cut(s)	158, 179
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	2 cut(s)	237, 371
HhaI	GCGC	3 cut(s)	157, 178, 752
Hin1I	GRCGYC	3 cut(s)	155, 176, 613
Hin1II	CATG	1 cut(s)	403
Hin6I	GCGC	3 cut(s)	155, 176, 750
HinP1I	GCGC	3 cut(s)	155, 176, 750
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	5 cut(s)	225, 416, 448, 577, 600
HpaII	CCGG	2 cut(s)	237, 371
HphI	GGTGA	2 cut(s)	120, 425
Hpy166II	GTNNAC	2 cut(s)	527, 640
Hpy188I	TCNGA	4 cut(s)	105, 169, 224, 230
Hpy188III	TCNNGA	3 cut(s)	485, 581, 698
Hpy8I	GTNNAC	2 cut(s)	527, 640
Hpy99I	CGWCG	2 cut(s)	100, 224
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	3 cut(s)	6, 613, 692
HpyF10VI	GCNNNNNNNGC	9 cut(s)	60, 66, 149, 152, 202, 205, 211, 360, 514
HpySE526I	ACGT	3 cut(s)	6, 613, 692
Hsp92I	GRCGYC	3 cut(s)	155, 176, 613
Hsp92II	CATG	1 cut(s)	403
HspAI	GCGC	3 cut(s)	155, 176, 750
KasI	GGCGCC	2 cut(s)	154, 175
Ksp22I	TGATCA	1 cut(s)	562
KspI	CCGCGG	1 cut(s)	153
Kzo9I	GATC	6 cut(s)	89, 425, 481, 487, 562, 631
LpnPI	CCDG	7 cut(s)	171, 192, 250, 384, 606, 633, 648
Lsp1109I	GCAGC	2 cut(s)	47, 217
LweI	GCATC	2 cut(s)	155, 277
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	3 cut(s)	6, 613, 692
MalI	GATC	6 cut(s)	91, 427, 483, 489, 564, 633
MboI	GATC	6 cut(s)	89, 425, 481, 487, 562, 631
MboII	GAAGA	3 cut(s)	253, 482, 641
MfeI	CAATTG	1 cut(s)	49
MflI	RGATCY	2 cut(s)	487, 631
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	3 cut(s)	49, 116, 685
Mly113I	GGCGCC	2 cut(s)	155, 176
MlyI	GAGTC	3 cut(s)	219, 425, 586
MmeI	TCCRAC	3 cut(s)	202, 325, 403
MnlI	CCTC	6 cut(s)	148, 527, 543, 600, 627, 727
MseI	TTAA	4 cut(s)	570, 596, 762, 793
MspA1I	CMGCKG	2 cut(s)	60, 152
MspCI	CTTAAG	1 cut(s)	595
MspI	CCGG	2 cut(s)	237, 371
MspR9I	CCNGG	4 cut(s)	237, 238, 371, 621
MunI	CAATTG	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	621
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	9 cut(s)	60, 66, 149, 152, 202, 205, 211, 360, 514
NarI	GGCGCC	2 cut(s)	155, 176
NciI	CCSGG	3 cut(s)	237, 238, 371
NdeII	GATC	6 cut(s)	89, 425, 481, 487, 562, 631
NlaIII	CATG	1 cut(s)	403
NlaIV	GGNNCC	3 cut(s)	156, 177, 633
PaeR7I	CTCGAG	1 cut(s)	731
PceI	AGGCCT	1 cut(s)	354
PfeI	GAWTC	2 cut(s)	448, 600
PflMI	CCANNNNNTGG	2 cut(s)	268, 524
PkrI	GCNGC	6 cut(s)	13, 62, 145, 154, 198, 207
PleI	GAGTC	3 cut(s)	219, 424, 585
PluTI	GGCGCC	2 cut(s)	158, 179
PpsI	GAGTC	3 cut(s)	219, 424, 585
Psp124BI	GAGCTC	1 cut(s)	167
Psp1406I	AACGTT	1 cut(s)	6
Psp6I	CCWGG	1 cut(s)	619
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	3 cut(s)	156, 177, 633
PspXI	VCTCGAGB	1 cut(s)	731
PsuI	RGATCY	2 cut(s)	487, 631
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	167
SacII	CCGCGG	1 cut(s)	153
SaqAI	TTAA	4 cut(s)	570, 596, 762, 793
SatI	GCNGC	6 cut(s)	12, 61, 144, 153, 197, 206
Sau3AI	GATC	6 cut(s)	89, 425, 481, 487, 562, 631
SchI	GAGTC	3 cut(s)	219, 425, 586
ScrFI	CCNGG	4 cut(s)	237, 238, 371, 621
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	8 cut(s)	9, 167, 298, 304, 316, 526, 616, 695
SfaNI	GCATC	2 cut(s)	155, 277
SfoI	GGCGCC	2 cut(s)	156, 177
Sfr274I	CTCGAG	1 cut(s)	731
Sfr303I	CCGCGG	1 cut(s)	153
SgrBI	CCGCGG	1 cut(s)	153
SlaI	CTCGAG	1 cut(s)	731
SmaI	CCCGGG	1 cut(s)	238
SmlI	CTYRAG	2 cut(s)	595, 731
SmoI	CTYRAG	2 cut(s)	595, 731
Sse9I	AATT	3 cut(s)	49, 116, 685
SseBI	AGGCCT	1 cut(s)	354
SspDI	GGCGCC	2 cut(s)	154, 175
SspMI	CTAG	1 cut(s)	485
SstI	GAGCTC	1 cut(s)	167
StuI	AGGCCT	1 cut(s)	354
StyD4I	CCNGG	4 cut(s)	235, 236, 369, 619
StyI	CCWWGG	1 cut(s)	777
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	3 cut(s)	9, 616, 695
TaqI	TCGA	5 cut(s)	88, 183, 428, 580, 732
TasI	AATT	3 cut(s)	49, 116, 685
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	3 cut(s)	146, 155, 199
TfiI	GAWTC	2 cut(s)	448, 600
Tru1I	TTAA	4 cut(s)	570, 596, 762, 793
Tru9I	TTAA	4 cut(s)	570, 596, 762, 793
TscAI	CASTG	2 cut(s)	165, 328
TseI	GCWGC	3 cut(s)	11, 60, 205
TspDTI	ATGAA	3 cut(s)	17, 416, 426
TspGWI	ACGGA	2 cut(s)	84, 546
TspMI	CCCGGG	1 cut(s)	236
TspRI	CASTG	2 cut(s)	165, 328
Van91I	CCANNNNNTGG	2 cut(s)	268, 524
Vha464I	CTTAAG	1 cut(s)	595
XapI	RAATTY	1 cut(s)	685
XbaI	TCTAGA	1 cut(s)	484
XhoI	CTCGAG	1 cut(s)	731
XmaI	CCCGGG	1 cut(s)	236
XspI	CTAG	1 cut(s)	485
ZraI	GACGTC	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.