Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018428.1

Orthogroup ID

OG0007236

Physical Location & Seq

Genomic Coordinates Reverse (-)

437 .. 2706

Gene Structure 2270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018428.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgagcgtcgctgcttctatatcctccatcgccaccgttcgtttccccaattgccgccgtcactgctttcgcgcctcaccatctctctcgcttcggataatggcccaattctcatcctccgccgcgtcttctccgccttccagctccgaagcggccgccgtggaacccaagaaaccgcccaagctgccgtggctcattgtcggactcggaaaccccggcaagaagtacagcagcacccgccacaatgtgggtttcgagatggtagatgctatagccgaagctgaagggatagctttgagcagtgtttctttcaaagcccttgttgggaaaggatttattggggatgccccggttatatttgccaaaccgcaaacttacatgaataaaagcggtgagtctgttggagccatcgtctcatattacaaaattccattgcagcaagtacttgtgatctttgacgatctggatctgccattcgcaaaattgcggctgttgccaaagggtggacatggaggacaaaatgggatgagaagtataattgatcattttaaaggaagccgtgactttccacgtttgagaatcggcattgggcggcctcctgggaaaatggaccctgccaactttgttcttcgtccctttactaaacaagaacgtgaagagttagattttacacttcaacatggcatagatgcggtgcggattctcttgcttgaagggttcaataaagcggcaacgtttgttaacacagccaagcccttggagcaatgtagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004045 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0052689 GO:0140098 GO:0140101

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pept_tRNA_hydro

Protein Analysis

257

Amino Acids

27.84

Weight (kDa)

9.73

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18440 AT1G18440
fragaria_vesca	FvH4_5g12500 FvH4_5g12500 FvH4_5g12500 FvH4_5g12500 FvH4_5g12500
malus_domestica	MD06G1212500.v1.1 MD14G1223800.v1.1
prunus_persica	Prupe.5G218900_v2.0.a1 Prupe.5G218900_v2.0.a1
pyrus_communis	pycom06g19010 pycom14g18500
rosa_chinensis	RchiOBHm_Chr7g0184851
rosa_laevigata	RLG00000004949
rosa_multiflora	Rmu_sc0018428.1_g000001 Rmu_sc0040795.1_g000001 Rmu_ssc0000289.1_g000013
rosa_roxburghii	Rroxscaffold_3G00269330
rosa_rugosa	Rorug06G0465400
rosa_samantha	Rh7AG077500 Rh7BG069800 Rh7CG070600 Rh7DG070000
rosa_wichuraiana	Rw7G005790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	247, 503
AccII	CGCG	2 cut(s)	72, 125
AclI	AACGTT	1 cut(s)	734
AclWI	GGATC	1 cut(s)	474
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	426
AcuI	CTGAAG	1 cut(s)	303
AdeI	CACNNNGTG	1 cut(s)	247
AfaI	GTAC	2 cut(s)	227, 444
AfiI	CCNNNNNNNGG	3 cut(s)	247, 324, 503
AgsI	TTSAA	4 cut(s)	313, 677, 713, 721
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	4 cut(s)	144, 184, 281, 293
AluI	AGCT	4 cut(s)	144, 184, 281, 293
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	1 cut(s)	474
AoxI	GGCC	3 cut(s)	102, 153, 593
ApeKI	GCWGC	4 cut(s)	11, 184, 231, 436
ApoI	RAATTY	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	103, 610
AsuC2I	CCSGG	2 cut(s)	216, 350
AsuHPI	GGTGA	2 cut(s)	69, 404
AvaII	GGWCC	1 cut(s)	610
BbsI	GAAGAC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	171, 243, 448
BccI	CCATC	4 cut(s)	35, 88, 253, 416
BceAI	ACGGC	4 cut(s)	42, 143, 172, 543
BciT130I	CCWGG	1 cut(s)	600
BclI	TGATCA	1 cut(s)	541
BcnI	CCSGG	2 cut(s)	216, 350
BcoDI	GTCTC	1 cut(s)	418
BfmI	CTRYAG	1 cut(s)	270
BmcAI	AGTACT	1 cut(s)	444
Bme1390I	CCNGG	3 cut(s)	216, 350, 600
Bme18I	GGWCC	1 cut(s)	610
BmgT120I	GGNCC	2 cut(s)	103, 610
BmiI	GGNNCC	3 cut(s)	165, 406, 612
BmrFI	CCNGG	3 cut(s)	216, 350, 600
BmsI	GCATC	3 cut(s)	256, 334, 679
BpiI	GAAGAC	1 cut(s)	120
BpuMI	CCSGG	2 cut(s)	216, 350
BsaBI	GATNNNNATC	1 cut(s)	465
BsaJI	CCNNGG	6 cut(s)	159, 188, 214, 348, 599, 756
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 324, 503
Bse3DI	GCAATG	2 cut(s)	431, 770
Bse8I	GATNNNNATC	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	6 cut(s)	159, 188, 214, 348, 599, 756
BseGI	GGATG	3 cut(s)	113, 349, 531
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	3 cut(s)	247, 324, 503
BseMI	GCAATG	2 cut(s)	431, 770
BseX3I	CGGCCG	1 cut(s)	153
BseXI	GCAGC	3 cut(s)	171, 243, 448
Bsh1236I	CGCG	2 cut(s)	72, 125
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	3 cut(s)	104, 155, 595
BsiEI	CGRYCG	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	216, 350
BslFI	GGGAC	1 cut(s)	618
BslI	CCNNNNNNNGG	3 cut(s)	247, 324, 503
BsmAI	GTCTC	1 cut(s)	418
BsmBI	CGTCTC	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	618
BsnI	GGCC	3 cut(s)	104, 155, 595
Bsp143I	GATC	4 cut(s)	450, 460, 466, 541
BspANI	GGCC	3 cut(s)	104, 155, 595
BspFNI	CGCG	2 cut(s)	72, 125
BspLI	GGNNCC	3 cut(s)	165, 406, 612
BspPI	GGATC	1 cut(s)	474
BsrDI	GCAATG	2 cut(s)	431, 770
BssECI	CCNNGG	6 cut(s)	159, 188, 214, 348, 599, 756
BssMI	GATC	4 cut(s)	450, 460, 466, 541
BssT1I	CCWWGG	1 cut(s)	756
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	651
BstDSI	CCRYGG	2 cut(s)	159, 188
BstF5I	GGATG	3 cut(s)	113, 349, 531
BstFNI	CGCG	2 cut(s)	72, 125
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	4 cut(s)	453, 463, 469, 544
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	4 cut(s)	450, 460, 466, 541
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	6 cut(s)	63, 184, 190, 237, 493, 760
BstNI	CCWGG	1 cut(s)	600
BstSCI	CCNGG	3 cut(s)	214, 348, 598
BstSFI	CTRYAG	1 cut(s)	270
BstUI	CGCG	2 cut(s)	72, 125
BstV1I	GCAGC	3 cut(s)	171, 243, 448
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	466
BstXI	CCANNNNNNTGG	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	466
BstZI	CGGCCG	1 cut(s)	153
BsuRI	GGCC	3 cut(s)	104, 155, 595
BtgI	CCRYGG	2 cut(s)	159, 188
BtgZI	GCGATG	1 cut(s)	13
BtsCI	GGATG	3 cut(s)	113, 349, 531
BtsI	GCAGTG	2 cut(s)	61, 307
BtsIMutI	CAGTG	2 cut(s)	61, 307
CciNI	GCGGCCGC	1 cut(s)	153
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	103, 610
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	226, 443
CviAII	CATG	3 cut(s)	379, 509, 680
CviQI	GTAC	2 cut(s)	226, 443
DpnI	GATC	4 cut(s)	452, 462, 468, 543
DpnII	GATC	4 cut(s)	450, 460, 466, 541
DraI	TTTAAA	1 cut(s)	550
DraIII	CACNNNGTG	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	153
EagI	CGGCCG	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
EciI	GGCGGA	2 cut(s)	109, 123
EclXI	CGGCCG	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	756
Eco47I	GGWCC	1 cut(s)	610
Eco52I	CGGCCG	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	756
ErhI	CCWWGG	1 cut(s)	756
Esp3I	CGTCTC	1 cut(s)	418
FaeI	CATG	3 cut(s)	382, 512, 683
FaiI	YATR	9 cut(s)	20, 272, 356, 380, 418, 510, 536, 681, 686
FaqI	GGGAC	1 cut(s)	618
FatI	CATG	3 cut(s)	378, 508, 679
FauI	CCCGC	1 cut(s)	245
FbaI	TGATCA	1 cut(s)	541
FokI	GGATG	3 cut(s)	100, 356, 538
GlaI	GCGC	1 cut(s)	73
HaeIII	GGCC	3 cut(s)	104, 155, 595
HapII	CCGG	2 cut(s)	216, 350
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	382, 512, 683
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HinfI	GANTC	4 cut(s)	204, 395, 579, 700
HpaI	GTTAAC	1 cut(s)	742
HpaII	CCGG	2 cut(s)	216, 350
HphI	GGTGA	2 cut(s)	69, 404
Hpy166II	GTNNAC	2 cut(s)	506, 742
Hpy188I	TCNGA	4 cut(s)	96, 148, 203, 209
Hpy188III	TCNNGA	2 cut(s)	256, 464
Hpy8I	GTNNAC	2 cut(s)	506, 742
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	147, 278, 707
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	3 cut(s)	571, 652, 734
HpyCH4V	TGCA	1 cut(s)	436
HpyF10VI	GCNNNNNNNGC	6 cut(s)	63, 184, 190, 237, 493, 760
HpySE526I	ACGT	3 cut(s)	571, 652, 734
Hsp92II	CATG	3 cut(s)	382, 512, 683
HspAI	GCGC	1 cut(s)	72
Ksp22I	TGATCA	1 cut(s)	541
KspAI	GTTAAC	1 cut(s)	742
Kzo9I	GATC	4 cut(s)	450, 460, 466, 541
LmnI	GCTCC	3 cut(s)	149, 404, 760
LpnPI	CCDG	7 cut(s)	154, 229, 363, 449, 585, 612, 627
Lsp1109I	GCAGC	3 cut(s)	171, 243, 448
LweI	GCATC	3 cut(s)	256, 334, 679
MaeII	ACGT	3 cut(s)	571, 652, 734
MaeIII	GTNAC	2 cut(s)	59, 560
MalI	GATC	4 cut(s)	452, 462, 468, 543
MboI	GATC	4 cut(s)	450, 460, 466, 541
MboII	GAAGA	3 cut(s)	120, 620, 668
MfeI	CAATTG	1 cut(s)	49
MflI	RGATCY	1 cut(s)	466
MluCI	AATT	5 cut(s)	49, 107, 426, 482, 537
MlyI	GAGTC	2 cut(s)	198, 404
MmeI	TCCRAC	2 cut(s)	181, 382
MnlI	CCTC	5 cut(s)	34, 85, 127, 506, 606
MseI	TTAA	3 cut(s)	549, 741, 772
MspI	CCGG	2 cut(s)	216, 350
MspR9I	CCNGG	3 cut(s)	216, 350, 600
MunI	CAATTG	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	600
MvnI	CGCG	2 cut(s)	72, 125
MwoI	GCNNNNNNNGC	6 cut(s)	63, 184, 190, 237, 493, 760
NciI	CCSGG	2 cut(s)	216, 350
NdeII	GATC	4 cut(s)	450, 460, 466, 541
NlaIII	CATG	3 cut(s)	382, 512, 683
NlaIV	GGNNCC	3 cut(s)	165, 406, 612
NmuCI	GTSAC	2 cut(s)	59, 560
NotI	GCGGCCGC	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	579, 700
PflMI	CCANNNNNTGG	2 cut(s)	247, 503
PleI	GAGTC	2 cut(s)	198, 403
PpsI	GAGTC	2 cut(s)	198, 403
Psp1406I	AACGTT	1 cut(s)	734
Psp6I	CCWGG	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	3 cut(s)	165, 406, 612
PspPI	GGNCC	2 cut(s)	103, 610
PsuI	RGATCY	1 cut(s)	466
RsaI	GTAC	2 cut(s)	227, 444
RsaNI	GTAC	2 cut(s)	226, 443
SaqAI	TTAA	3 cut(s)	549, 741, 772
Sau3AI	GATC	4 cut(s)	450, 460, 466, 541
Sau96I	GGNCC	2 cut(s)	103, 610
ScaI	AGTACT	1 cut(s)	444
SchI	GAGTC	2 cut(s)	198, 404
ScrFI	CCNGG	3 cut(s)	216, 350, 600
SetI	ASST	7 cut(s)	146, 186, 283, 295, 574, 655, 737
SfaNI	GCATC	3 cut(s)	256, 334, 679
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	610
Sse9I	AATT	5 cut(s)	49, 107, 426, 482, 537
StyD4I	CCNGG	3 cut(s)	214, 348, 598
StyI	CCWWGG	1 cut(s)	756
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	3 cut(s)	574, 655, 737
TaqI	TCGA	1 cut(s)	255
TasI	AATT	5 cut(s)	49, 107, 426, 482, 537
TatI	WGTACW	2 cut(s)	225, 442
TauI	GCSGC	7 cut(s)	57, 125, 155, 158, 490, 595, 731
TfiI	GAWTC	2 cut(s)	579, 700
Tru1I	TTAA	3 cut(s)	549, 741, 772
Tru9I	TTAA	3 cut(s)	549, 741, 772
TscAI	CASTG	2 cut(s)	68, 307
TseFI	GTSAC	2 cut(s)	59, 560
TseI	GCWGC	4 cut(s)	11, 184, 231, 436
Tsp45I	GTSAC	2 cut(s)	59, 560
TspDTI	ATGAA	1 cut(s)	395
TspRI	CASTG	2 cut(s)	68, 307
Van91I	CCANNNNNTGG	2 cut(s)	247, 503
VpaK11BI	GGWCC	1 cut(s)	610
XapI	RAATTY	1 cut(s)	426
ZrmI	AGTACT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.