Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007236

Physical Location & Seq

Genomic Coordinates Reverse (-)

5043182 .. 5045510

Gene Structure 2329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG070600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCCATACTTCTCCAACACTCAAACAATTATTTTCTTCATACAAATCACATCCAATCAAAAATGAGCGTCGCTGCTTCTATATCCTCCATCGCCACCGTTCGTTTCCCCAATTGCCGCCGTCACTGCTTTCGCGCCTCACCATCTCTCTCGCTTCGGATAATGGCCCAATTCTCATCCTCCTCCGCCGCGTCTACGCCGCCTTCCAGCTCCAAAGCGGCCGCCGTGGAACCCAAGAAACCGCCCAAGCTGCCGTGGCTCATTGTCGGACTCGGAAACCCCGGCAAGAAGTACAGCAGCACCCGCCACAATGTGGGTTTCGAGATGGTGGATGCTATAGCCGAAGCTGAAGGGATAGCTTTGAGCAGTGTTTCTTTCAAAGCCGTTGTTGGGAAAGGATTTATTGGGGATGCCCCGGTTATATTTGCCAAACCGCAAACTTACATGAATAAAAGCGGTGAGTCTGTTGGAGCCATCGTCTCATATTACAAAATTCCATTGCAGCAAGTACTTGTGATCTTTGACGATCTGGATCTGCCATTCGCAAAATTGCGGCTGTTGCCAAAGGGTGGACATGGAGGACAAAATGGCATGAGAAGTATAATTGATCATTTTAAAGGAAGCCGTGACTTTCCACGTTTGAGAATCGGCATTGGGCGGCCTCCTGGGAAAATGGACCCTGCCAACTTTGTTCTTCGTCCCTTTACTAAACAAGAACGTGAAGAGTTAGATTTTACACTTCAACATGGCATAGATGCGGTGCGGATTCTCTTGCTTGAAGGGTTCAATAAAGCGGCAACGTTTGTTAACACAGCCAAACCCTTGGAGCAATGTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004045 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0052689 GO:0140098 GO:0140101

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pept_tRNA_hydro

Protein Analysis

279

Amino Acids

30.44

Weight (kDa)

9.87

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pept_tRNA_hydro	PF01195	87 - 268	1.9e-65	Peptidyl-tRNA hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18440 AT1G18440
fragaria_vesca	FvH4_5g12500 FvH4_5g12500 FvH4_5g12500 FvH4_5g12500 FvH4_5g12500
malus_domestica	MD06G1212500.v1.1 MD14G1223800.v1.1
prunus_persica	Prupe.5G218900_v2.0.a1 Prupe.5G218900_v2.0.a1
pyrus_communis	pycom06g19010 pycom14g18500
rosa_chinensis	RchiOBHm_Chr7g0184851
rosa_laevigata	RLG00000004949
rosa_multiflora	Rmu_sc0018428.1_g000001 Rmu_sc0040795.1_g000001 Rmu_ssc0000289.1_g000013
rosa_roxburghii	Rroxscaffold_3G00269330
rosa_rugosa	Rorug06G0465400
rosa_samantha	Rh7AG077500 Rh7BG069800 Rh7CG070600 Rh7DG070000
rosa_wichuraiana	Rw7G005790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	313, 569
AccI	GTMKAC	1 cut(s)	194
AccII	CGCG	2 cut(s)	135, 191
AclI	AACGTT	1 cut(s)	800
AclWI	GGATC	1 cut(s)	540
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	492
AcuI	CTGAAG	1 cut(s)	369
AdeI	CACNNNGTG	1 cut(s)	313
AfaI	GTAC	2 cut(s)	293, 510
AfiI	CCNNNNNNNGG	3 cut(s)	313, 390, 569
AgsI	TTSAA	4 cut(s)	379, 743, 779, 787
AjnI	CCWGG	1 cut(s)	664
AluBI	AGCT	4 cut(s)	210, 250, 347, 359
AluI	AGCT	4 cut(s)	210, 250, 347, 359
Alw26I	GTCTC	1 cut(s)	484
AlwI	GGATC	1 cut(s)	540
AoxI	GGCC	3 cut(s)	165, 219, 659
ApeKI	GCWGC	4 cut(s)	74, 250, 297, 502
ApoI	RAATTY	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	166, 676
AsuC2I	CCSGG	2 cut(s)	282, 416
AsuHPI	GGTGA	2 cut(s)	132, 470
AvaII	GGWCC	1 cut(s)	676
BbvI	GCAGC	4 cut(s)	61, 237, 309, 514
BccI	CCATC	4 cut(s)	98, 151, 319, 482
BceAI	ACGGC	5 cut(s)	105, 209, 238, 368, 609
BciT130I	CCWGG	1 cut(s)	666
BclI	TGATCA	1 cut(s)	607
BcnI	CCSGG	2 cut(s)	282, 416
BcoDI	GTCTC	1 cut(s)	484
BfmI	CTRYAG	1 cut(s)	336
BmcAI	AGTACT	1 cut(s)	510
Bme1390I	CCNGG	3 cut(s)	282, 416, 666
Bme18I	GGWCC	1 cut(s)	676
BmgT120I	GGNCC	2 cut(s)	166, 676
BmiI	GGNNCC	3 cut(s)	231, 472, 678
BmrFI	CCNGG	3 cut(s)	282, 416, 666
BmsI	GCATC	3 cut(s)	322, 400, 745
BpuMI	CCSGG	2 cut(s)	282, 416
BsaBI	GATNNNNATC	1 cut(s)	531
BsaJI	CCNNGG	6 cut(s)	225, 254, 280, 414, 665, 822
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	3 cut(s)	313, 390, 569
Bse3DI	GCAATG	2 cut(s)	497, 836
Bse8I	GATNNNNATC	1 cut(s)	531
BseBI	CCWGG	1 cut(s)	666
BseDI	CCNNGG	6 cut(s)	225, 254, 280, 414, 665, 822
BseGI	GGATG	4 cut(s)	51, 176, 337, 415
BseJI	GATNNNNATC	1 cut(s)	531
BseLI	CCNNNNNNNGG	3 cut(s)	313, 390, 569
BseMI	GCAATG	2 cut(s)	497, 836
BseRI	GAGGAG	1 cut(s)	172
BseX3I	CGGCCG	1 cut(s)	219
BseXI	GCAGC	4 cut(s)	61, 237, 309, 514
Bsh1236I	CGCG	2 cut(s)	135, 191
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	167, 221, 661
BsiEI	CGRYCG	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	282, 416
BslFI	GGGAC	1 cut(s)	684
BslI	CCNNNNNNNGG	3 cut(s)	313, 390, 569
BsmAI	GTCTC	1 cut(s)	484
BsmBI	CGTCTC	1 cut(s)	484
BsmFI	GGGAC	1 cut(s)	684
BsnI	GGCC	3 cut(s)	167, 221, 661
Bsp143I	GATC	4 cut(s)	516, 526, 532, 607
BspANI	GGCC	3 cut(s)	167, 221, 661
BspFNI	CGCG	2 cut(s)	135, 191
BspLI	GGNNCC	3 cut(s)	231, 472, 678
BspPI	GGATC	1 cut(s)	540
BsrDI	GCAATG	2 cut(s)	497, 836
BssECI	CCNNGG	6 cut(s)	225, 254, 280, 414, 665, 822
BssMI	GATC	4 cut(s)	516, 526, 532, 607
BssT1I	CCWWGG	1 cut(s)	822
Bst2UI	CCWGG	1 cut(s)	666
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	717
BstDSI	CCRYGG	2 cut(s)	225, 254
BstF5I	GGATG	4 cut(s)	51, 176, 337, 415
BstFNI	CGCG	2 cut(s)	135, 191
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	4 cut(s)	519, 529, 535, 610
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	4 cut(s)	516, 526, 532, 607
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 250, 256, 303, 559
BstNI	CCWGG	1 cut(s)	666
BstSCI	CCNGG	3 cut(s)	280, 414, 664
BstSFI	CTRYAG	1 cut(s)	336
BstUI	CGCG	2 cut(s)	135, 191
BstV1I	GCAGC	4 cut(s)	61, 237, 309, 514
BstX2I	RGATCY	1 cut(s)	532
BstXI	CCANNNNNNTGG	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	532
BstZI	CGGCCG	1 cut(s)	219
BsuRI	GGCC	3 cut(s)	167, 221, 661
BtgI	CCRYGG	2 cut(s)	225, 254
BtgZI	GCGATG	1 cut(s)	76
BtsCI	GGATG	4 cut(s)	51, 176, 337, 415
BtsI	GCAGTG	2 cut(s)	124, 373
BtsIMutI	CAGTG	2 cut(s)	124, 373
CciNI	GCGGCCGC	1 cut(s)	219
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	166, 676
CseI	GACGC	2 cut(s)	58, 180
Csp6I	GTAC	2 cut(s)	292, 509
CviAII	CATG	4 cut(s)	445, 575, 592, 746
CviQI	GTAC	2 cut(s)	292, 509
DpnI	GATC	4 cut(s)	518, 528, 534, 609
DpnII	GATC	4 cut(s)	516, 526, 532, 607
DraI	TTTAAA	1 cut(s)	616
DraIII	CACNNNGTG	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	219
EagI	CGGCCG	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
EciI	GGCGGA	1 cut(s)	175
EclXI	CGGCCG	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	822
Eco47I	GGWCC	1 cut(s)	676
Eco52I	CGGCCG	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	664
EcoT14I	CCWWGG	1 cut(s)	822
ErhI	CCWWGG	1 cut(s)	822
Esp3I	CGTCTC	1 cut(s)	484
FaeI	CATG	4 cut(s)	448, 578, 595, 749
FaqI	GGGAC	1 cut(s)	684
FatI	CATG	4 cut(s)	444, 574, 591, 745
FauI	CCCGC	1 cut(s)	311
FbaI	TGATCA	1 cut(s)	607
FblI	GTMKAC	1 cut(s)	194
FokI	GGATG	4 cut(s)	38, 163, 344, 422
GlaI	GCGC	1 cut(s)	136
HaeIII	GGCC	3 cut(s)	167, 221, 661
HapII	CCGG	2 cut(s)	282, 416
HgaI	GACGC	2 cut(s)	58, 180
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	4 cut(s)	448, 578, 595, 749
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HincII	GTYRAC	1 cut(s)	808
HindII	GTYRAC	1 cut(s)	808
HinfI	GANTC	4 cut(s)	270, 461, 645, 766
HpaI	GTTAAC	1 cut(s)	808
HpaII	CCGG	2 cut(s)	282, 416
HphI	GGTGA	2 cut(s)	132, 470
Hpy166II	GTNNAC	3 cut(s)	195, 572, 808
Hpy188I	TCNGA	3 cut(s)	159, 269, 275
Hpy188III	TCNNGA	2 cut(s)	322, 530
Hpy8I	GTNNAC	3 cut(s)	195, 572, 808
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	3 cut(s)	213, 344, 773
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	3 cut(s)	637, 718, 800
HpyCH4V	TGCA	1 cut(s)	502
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 250, 256, 303, 559
HpySE526I	ACGT	3 cut(s)	637, 718, 800
Hsp92II	CATG	4 cut(s)	448, 578, 595, 749
HspAI	GCGC	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	607
KspAI	GTTAAC	1 cut(s)	808
Kzo9I	GATC	4 cut(s)	516, 526, 532, 607
LmnI	GCTCC	3 cut(s)	215, 470, 826
LpnPI	CCDG	7 cut(s)	220, 295, 429, 515, 651, 678, 693
Lsp1109I	GCAGC	4 cut(s)	61, 237, 309, 514
LweI	GCATC	3 cut(s)	322, 400, 745
MaeII	ACGT	3 cut(s)	637, 718, 800
MaeIII	GTNAC	2 cut(s)	122, 626
MalI	GATC	4 cut(s)	518, 528, 534, 609
MboI	GATC	4 cut(s)	516, 526, 532, 607
MboII	GAAGA	3 cut(s)	29, 686, 734
MfeI	CAATTG	1 cut(s)	112
MflI	RGATCY	1 cut(s)	532
MluCI	AATT	6 cut(s)	28, 112, 170, 492, 548, 603
MlyI	GAGTC	2 cut(s)	264, 470
MmeI	TCCRAC	3 cut(s)	40, 247, 448
MnlI	CCTC	6 cut(s)	97, 148, 190, 193, 572, 672
MseI	TTAA	3 cut(s)	615, 807, 838
MspI	CCGG	2 cut(s)	282, 416
MspR9I	CCNGG	3 cut(s)	282, 416, 666
MunI	CAATTG	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	666
MvnI	CGCG	2 cut(s)	135, 191
MwoI	GCNNNNNNNGC	5 cut(s)	126, 250, 256, 303, 559
NciI	CCSGG	2 cut(s)	282, 416
NdeII	GATC	4 cut(s)	516, 526, 532, 607
NlaIII	CATG	4 cut(s)	448, 578, 595, 749
NlaIV	GGNNCC	3 cut(s)	231, 472, 678
NmuCI	GTSAC	2 cut(s)	122, 626
NotI	GCGGCCGC	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	645, 766
PflMI	CCANNNNNTGG	2 cut(s)	313, 569
PleI	GAGTC	2 cut(s)	264, 469
PpsI	GAGTC	2 cut(s)	264, 469
Psp1406I	AACGTT	1 cut(s)	800
Psp6I	CCWGG	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	664
PspN4I	GGNNCC	3 cut(s)	231, 472, 678
PspPI	GGNCC	2 cut(s)	166, 676
PsuI	RGATCY	1 cut(s)	532
RsaI	GTAC	2 cut(s)	293, 510
RsaNI	GTAC	2 cut(s)	292, 509
SaqAI	TTAA	3 cut(s)	615, 807, 838
Sau3AI	GATC	4 cut(s)	516, 526, 532, 607
Sau96I	GGNCC	2 cut(s)	166, 676
ScaI	AGTACT	1 cut(s)	510
SchI	GAGTC	2 cut(s)	264, 470
ScrFI	CCNGG	3 cut(s)	282, 416, 666
SetI	ASST	7 cut(s)	212, 252, 349, 361, 640, 721, 803
SfaNI	GCATC	3 cut(s)	322, 400, 745
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	1 cut(s)	676
Sse9I	AATT	6 cut(s)	28, 112, 170, 492, 548, 603
StyD4I	CCNGG	3 cut(s)	280, 414, 664
StyI	CCWWGG	1 cut(s)	822
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	3 cut(s)	640, 721, 803
TaqI	TCGA	1 cut(s)	321
TasI	AATT	6 cut(s)	28, 112, 170, 492, 548, 603
TatI	WGTACW	2 cut(s)	291, 508
TauI	GCSGC	8 cut(s)	120, 191, 202, 221, 224, 556, 661, 797
TfiI	GAWTC	2 cut(s)	645, 766
Tru1I	TTAA	3 cut(s)	615, 807, 838
Tru9I	TTAA	3 cut(s)	615, 807, 838
TscAI	CASTG	2 cut(s)	131, 373
TseFI	GTSAC	2 cut(s)	122, 626
TseI	GCWGC	4 cut(s)	74, 250, 297, 502
Tsp45I	GTSAC	2 cut(s)	122, 626
TspDTI	ATGAA	2 cut(s)	29, 461
TspRI	CASTG	2 cut(s)	131, 373
Van91I	CCANNNNNTGG	2 cut(s)	313, 569
VpaK11BI	GGWCC	1 cut(s)	676
XapI	RAATTY	1 cut(s)	492
XmiI	GTMKAC	1 cut(s)	194
ZrmI	AGTACT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.