RchiOBHm_Chr7g0184851

Belongs to the PTH family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007236
Physical Location & Seq
Reverse (-)
5214326 .. 5217131
2806 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16492

Sequence Viewer

Length: 837 bp
ATGTCCATACTTCTCCAACACTCAAACAATTATTTGCTTCATACAAATCACATCCAATCAAAAATGAGCGTCGCTGCTTCTATATCCTCCATCGCCACCGTTCGTTTCCCCAATTGCCGCCGTCACTGCTTTCGCGCCTCACCATCTCTCTCGCTTCGGATAATGGCCCAATTCTCATCCTCTGCCGCGTCTACTCCGCCTTCCCGCTCCGAAGCGGCCGCCGTGGAACCCAAGAAACCGCCCAAGCTGCCGTGGCTCATTGTCGGACTCGGAAACCCCGGCAAGAAGTACAGCAGCACCCGCCACAATGTGGGTTTCGAGATGGTGGATGCTATAGCCGAAGCTGAAGGGATAGCTTTGAGCAGTGTTTCTTTCAAAGCCCTTGTTGGGAAAGGATTTATTGGGGATGCCCCGGTTATATTTGCCAAACCGCAAACTTACATGAATAAAAGCGGTGAGTCTGTTGGAGCCATCGTCTCATATTACAAAATTCCATTGCAGCAAGTACTTGTGATCTTTGACGATCTGGATCTGCCATTCACAAAATTGCGGCTGTTGCCAAAGGGTGGACATGGAGGACAAAATGGGATGAGAAGTATAATTGATCATTTTAAAGGAAGCCGTGACTTTCCACGTTTGAGAATCGGCATTGGGCGGCCTCCTGGGAAAATGGACCCTGCCAACTTTGTTCTTCGTCCCTTTACTAAACAAGAACGTGAAGAGTTAGATTTTACACTTCAACATGGCATAGATGCGGTGCGGATTCTCTTGCTTGAAGGGTTCAATAAAGCGGCAACGTTTGTTAACACAGCCAAGCCCTTGGAGCAATGTAGTTAA

Protein Analysis

278

Amino Acids

30.43

Weight (kDa)

9.83

Isoelectric Point (pI)

50.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pept_tRNA_hydro PF01195 86 - 267 1.4e-65 Peptidyl-tRNA hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 310, 566
AccBSI CCGCTC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 191
AccII CGCG 2 cut(s) 135, 188
AclI AACGTT 1 cut(s) 797
AclWI GGATC 1 cut(s) 537
AcoI YGGCCR 1 cut(s) 216
AcsI RAATTY 1 cut(s) 489
AcuI CTGAAG 1 cut(s) 366
AdeI CACNNNGTG 1 cut(s) 310
AfaI GTAC 2 cut(s) 290, 507
AfiI CCNNNNNNNGG 3 cut(s) 310, 387, 566
AgsI TTSAA 4 cut(s) 376, 740, 776, 784
AjnI CCWGG 1 cut(s) 661
AluBI AGCT 3 cut(s) 247, 344, 356
AluI AGCT 3 cut(s) 247, 344, 356
Alw26I GTCTC 1 cut(s) 481
AlwI GGATC 1 cut(s) 537
AoxI GGCC 3 cut(s) 165, 216, 656
ApeKI GCWGC 4 cut(s) 74, 247, 294, 499
ApoI RAATTY 1 cut(s) 489
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 166, 673
AsuC2I CCSGG 2 cut(s) 279, 413
AsuHPI GGTGA 2 cut(s) 132, 467
AvaII GGWCC 1 cut(s) 673
BbvI GCAGC 4 cut(s) 61, 234, 306, 511
BccI CCATC 4 cut(s) 98, 151, 316, 479
BceAI ACGGC 4 cut(s) 105, 206, 235, 606
BciT130I CCWGG 1 cut(s) 663
BclI TGATCA 1 cut(s) 604
BcnI CCSGG 2 cut(s) 279, 413
BcoDI GTCTC 1 cut(s) 481
BfmI CTRYAG 1 cut(s) 333
BmcAI AGTACT 1 cut(s) 507
Bme1390I CCNGG 3 cut(s) 279, 413, 663
Bme18I GGWCC 1 cut(s) 673
BmgT120I GGNCC 2 cut(s) 166, 673
BmiI GGNNCC 3 cut(s) 228, 469, 675
BmrFI CCNGG 3 cut(s) 279, 413, 663
BmsI GCATC 3 cut(s) 319, 397, 742
BpuMI CCSGG 2 cut(s) 279, 413
BsaBI GATNNNNATC 1 cut(s) 528
BsaJI CCNNGG 6 cut(s) 222, 251, 277, 411, 662, 819
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bsc4I CCNNNNNNNGG 3 cut(s) 310, 387, 566
Bse3DI GCAATG 2 cut(s) 494, 833
Bse8I GATNNNNATC 1 cut(s) 528
BseBI CCWGG 1 cut(s) 663
BseDI CCNNGG 6 cut(s) 222, 251, 277, 411, 662, 819
BseGI GGATG 5 cut(s) 51, 176, 334, 412, 594
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 3 cut(s) 310, 387, 566
BseMI GCAATG 2 cut(s) 494, 833
BseX3I CGGCCG 1 cut(s) 216
BseXI GCAGC 4 cut(s) 61, 234, 306, 511
Bsh1236I CGCG 2 cut(s) 135, 188
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 3 cut(s) 167, 218, 658
BsiEI CGRYCG 1 cut(s) 219
BsiSI CCGG 2 cut(s) 279, 413
BslFI GGGAC 1 cut(s) 681
BslI CCNNNNNNNGG 3 cut(s) 310, 387, 566
BsmAI GTCTC 1 cut(s) 481
BsmBI CGTCTC 1 cut(s) 481
BsmFI GGGAC 1 cut(s) 681
BsnI GGCC 3 cut(s) 167, 218, 658
Bsp143I GATC 4 cut(s) 513, 523, 529, 604
BspANI GGCC 3 cut(s) 167, 218, 658
BspFNI CGCG 2 cut(s) 135, 188
BspLI GGNNCC 3 cut(s) 228, 469, 675
BspPI GGATC 1 cut(s) 537
BsrBI CCGCTC 1 cut(s) 207
BsrDI GCAATG 2 cut(s) 494, 833
BssECI CCNNGG 6 cut(s) 222, 251, 277, 411, 662, 819
BssMI GATC 4 cut(s) 513, 523, 529, 604
BssT1I CCWWGG 1 cut(s) 819
Bst2UI CCWGG 1 cut(s) 663
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 714
BstDSI CCRYGG 2 cut(s) 222, 251
BstF5I GGATG 5 cut(s) 51, 176, 334, 412, 594
BstFNI CGCG 2 cut(s) 135, 188
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 4 cut(s) 516, 526, 532, 607
BstMAI GTCTC 1 cut(s) 481
BstMBI GATC 4 cut(s) 513, 523, 529, 604
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 6 cut(s) 126, 247, 253, 300, 556, 823
BstNI CCWGG 1 cut(s) 663
BstSCI CCNGG 3 cut(s) 277, 411, 661
BstSFI CTRYAG 1 cut(s) 333
BstUI CGCG 2 cut(s) 135, 188
BstV1I GCAGC 4 cut(s) 61, 234, 306, 511
BstX2I RGATCY 1 cut(s) 529
BstXI CCANNNNNNTGG 1 cut(s) 820
BstYI RGATCY 1 cut(s) 529
BstZI CGGCCG 1 cut(s) 216
BsuRI GGCC 3 cut(s) 167, 218, 658
BtgI CCRYGG 2 cut(s) 222, 251
BtgZI GCGATG 1 cut(s) 76
BtsCI GGATG 5 cut(s) 51, 176, 334, 412, 594
BtsI GCAGTG 2 cut(s) 124, 370
BtsIMutI CAGTG 2 cut(s) 124, 370
CciNI GCGGCCGC 1 cut(s) 216
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 166, 673
CseI GACGC 2 cut(s) 58, 177
Csp6I GTAC 2 cut(s) 289, 506
CviAII CATG 3 cut(s) 442, 572, 743
CviQI GTAC 2 cut(s) 289, 506
DpnI GATC 4 cut(s) 515, 525, 531, 606
DpnII GATC 4 cut(s) 513, 523, 529, 604
DraI TTTAAA 1 cut(s) 613
DraIII CACNNNGTG 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 216
EagI CGGCCG 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 714
EarI CTCTTC 1 cut(s) 714
EciI GGCGGA 1 cut(s) 186
EclXI CGGCCG 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 819
Eco47I GGWCC 1 cut(s) 673
Eco52I CGGCCG 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 661
EcoT14I CCWWGG 1 cut(s) 819
ErhI CCWWGG 1 cut(s) 819
Esp3I CGTCTC 1 cut(s) 481
FaeI CATG 3 cut(s) 445, 575, 746
FaqI GGGAC 1 cut(s) 681
FatI CATG 3 cut(s) 441, 571, 742
FauI CCCGC 2 cut(s) 212, 308
FbaI TGATCA 1 cut(s) 604
FblI GTMKAC 1 cut(s) 191
FokI GGATG 5 cut(s) 38, 163, 341, 419, 601
GlaI GCGC 1 cut(s) 136
HaeIII GGCC 3 cut(s) 167, 218, 658
HapII CCGG 2 cut(s) 279, 413
HgaI GACGC 2 cut(s) 58, 177
HhaI GCGC 1 cut(s) 137
Hin1II CATG 3 cut(s) 445, 575, 746
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HinfI GANTC 4 cut(s) 267, 458, 642, 763
HpaI GTTAAC 1 cut(s) 805
HpaII CCGG 2 cut(s) 279, 413
HphI GGTGA 2 cut(s) 132, 467
Hpy166II GTNNAC 3 cut(s) 192, 569, 805
Hpy188I TCNGA 4 cut(s) 159, 211, 266, 272
Hpy188III TCNNGA 2 cut(s) 319, 527
Hpy8I GTNNAC 3 cut(s) 192, 569, 805
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 3 cut(s) 210, 341, 770
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 3 cut(s) 634, 715, 797
HpyCH4V TGCA 1 cut(s) 499
HpyF10VI GCNNNNNNNGC 6 cut(s) 126, 247, 253, 300, 556, 823
HpySE526I ACGT 3 cut(s) 634, 715, 797
Hsp92II CATG 3 cut(s) 445, 575, 746
HspAI GCGC 1 cut(s) 135
Ksp22I TGATCA 1 cut(s) 604
KspAI GTTAAC 1 cut(s) 805
Kzo9I GATC 4 cut(s) 513, 523, 529, 604
LmnI GCTCC 3 cut(s) 212, 467, 823
LpnPI CCDG 6 cut(s) 292, 426, 512, 648, 675, 690
Lsp1109I GCAGC 4 cut(s) 61, 234, 306, 511
LweI GCATC 3 cut(s) 319, 397, 742
MaeII ACGT 3 cut(s) 634, 715, 797
MaeIII GTNAC 2 cut(s) 122, 623
MalI GATC 4 cut(s) 515, 525, 531, 606
MbiI CCGCTC 1 cut(s) 207
MboI GATC 4 cut(s) 513, 523, 529, 604
MboII GAAGA 2 cut(s) 683, 731
MfeI CAATTG 1 cut(s) 112
MflI RGATCY 1 cut(s) 529
MluCI AATT 6 cut(s) 28, 112, 170, 489, 545, 600
MlyI GAGTC 2 cut(s) 261, 467
MmeI TCCRAC 3 cut(s) 40, 244, 445
MnlI CCTC 5 cut(s) 97, 148, 190, 569, 669
MseI TTAA 3 cut(s) 612, 804, 835
MspI CCGG 2 cut(s) 279, 413
MspR9I CCNGG 3 cut(s) 279, 413, 663
MunI CAATTG 1 cut(s) 112
MvaI CCWGG 1 cut(s) 663
MvnI CGCG 2 cut(s) 135, 188
MwoI GCNNNNNNNGC 6 cut(s) 126, 247, 253, 300, 556, 823
NciI CCSGG 2 cut(s) 279, 413
NdeII GATC 4 cut(s) 513, 523, 529, 604
NlaIII CATG 3 cut(s) 445, 575, 746
NlaIV GGNNCC 3 cut(s) 228, 469, 675
NmuCI GTSAC 2 cut(s) 122, 623
NotI GCGGCCGC 1 cut(s) 216
PfeI GAWTC 2 cut(s) 642, 763
PflMI CCANNNNNTGG 2 cut(s) 310, 566
PleI GAGTC 2 cut(s) 261, 466
PpsI GAGTC 2 cut(s) 261, 466
Psp1406I AACGTT 1 cut(s) 797
Psp6I CCWGG 1 cut(s) 661
PspGI CCWGG 1 cut(s) 661
PspN4I GGNNCC 3 cut(s) 228, 469, 675
PspPI GGNCC 2 cut(s) 166, 673
PsuI RGATCY 1 cut(s) 529
RsaI GTAC 2 cut(s) 290, 507
RsaNI GTAC 2 cut(s) 289, 506
SaqAI TTAA 3 cut(s) 612, 804, 835
Sau3AI GATC 4 cut(s) 513, 523, 529, 604
Sau96I GGNCC 2 cut(s) 166, 673
ScaI AGTACT 1 cut(s) 507
SchI GAGTC 2 cut(s) 261, 467
ScrFI CCNGG 3 cut(s) 279, 413, 663
SetI ASST 6 cut(s) 249, 346, 358, 637, 718, 800
SfaNI GCATC 3 cut(s) 319, 397, 742
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 1 cut(s) 673
Sse9I AATT 6 cut(s) 28, 112, 170, 489, 545, 600
StyD4I CCNGG 3 cut(s) 277, 411, 661
StyI CCWWGG 1 cut(s) 819
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 3 cut(s) 637, 718, 800
TaqI TCGA 1 cut(s) 318
TasI AATT 6 cut(s) 28, 112, 170, 489, 545, 600
TatI WGTACW 2 cut(s) 288, 505
TauI GCSGC 7 cut(s) 120, 188, 218, 221, 553, 658, 794
TfiI GAWTC 2 cut(s) 642, 763
Tru1I TTAA 3 cut(s) 612, 804, 835
Tru9I TTAA 3 cut(s) 612, 804, 835
TscAI CASTG 2 cut(s) 131, 370
TseFI GTSAC 2 cut(s) 122, 623
TseI GCWGC 4 cut(s) 74, 247, 294, 499
Tsp45I GTSAC 2 cut(s) 122, 623
TspDTI ATGAA 2 cut(s) 29, 458
TspRI CASTG 2 cut(s) 131, 370
Van91I CCANNNNNTGG 2 cut(s) 310, 566
VpaK11BI GGWCC 1 cut(s) 673
XapI RAATTY 1 cut(s) 489
XmiI GTMKAC 1 cut(s) 191
ZrmI AGTACT 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.