Rw7G005790

Belongs to the PTH family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0007236
Physical Location & Seq
Reverse (-)
4853171 .. 4855440
2270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G005790.1

Sequence Viewer

Length: 774 bp
ATGAGCGTCGCTGCTTCTATATCCTCCATCGCCACCGTTCGTTTCCCCAATTGCCGCCGTCACTGCTTTCGCGCCTCACCATCTCTCTCGCTTCGGATAATGGCCCAATTCTCATCCTCCGCCGCGTCTACGCCGCCTTCCAGCTCCGAAGCGGCCGCCGTGGAACCCAAGAAACCGCCCAAGCTGCCGTGGCTCATTGTTGGACTCGGAAACCCCGGCAAGAAGTACAGCTGCACCCGCCACAATGTGGGTTTCGAGATGGTGGATGCTATAGCCGAAGCTGAAGGGATAGCTTTGAGCAGTGTTTCTTTCAAAGCCCTTGTTGGGAAAGGATTTATTGGGGATGCCCCGGTTATATTTACCAAACCGCAAACTTACATGAATAAAAGCGGTGAGTCTGTTGGAGCCATCGTCTCATATTACAAAATTCCATTGCAGCAAGTACTTGTGATCTTTGACGATCTGGATCTGCCATTCGCAAAATTGCGGCTGTTGCCAAAGGGTGGACATGGAGGACAAAATGGGATGAGAAGTATAATTGATCATTTTAAAGGAAGCCGTGACTTTCCACGTTTGAGAATCGGCATTGGGCGGCCTCCTGGGAAAATGGACCCTGCCAACTTTGTACTTCGTCCCTTTACTAAAGAAGAACGTGAACAGTTAGATTTTACACTTCAACATGGCATAGATGCGGTGCGGATTCTCTTGCTTGAAGGGTTCAATAAAGCGGCAACGTTTGTTAACACAGCCAAGCCCTTGGAGCAATGTAGTTAA

Protein Analysis

257

Amino Acids

27.9

Weight (kDa)

9.67

Isoelectric Point (pI)

46.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pept_tRNA_hydro PF01195 65 - 246 3.5e-65 Peptidyl-tRNA hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 247, 503
AccI GTMKAC 1 cut(s) 128
AccII CGCG 2 cut(s) 72, 125
AclI AACGTT 1 cut(s) 734
AclWI GGATC 1 cut(s) 474
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 1 cut(s) 426
AcuI CTGAAG 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 247
AfaI GTAC 3 cut(s) 227, 444, 627
AfiI CCNNNNNNNGG 3 cut(s) 247, 324, 503
AgsI TTSAA 4 cut(s) 313, 677, 713, 721
AjnI CCWGG 1 cut(s) 598
AluBI AGCT 5 cut(s) 144, 184, 231, 281, 293
AluI AGCT 5 cut(s) 144, 184, 231, 281, 293
Alw26I GTCTC 1 cut(s) 418
AlwI GGATC 1 cut(s) 474
AoxI GGCC 3 cut(s) 102, 153, 593
ApeKI GCWGC 4 cut(s) 11, 184, 231, 436
ApoI RAATTY 1 cut(s) 426
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 2 cut(s) 103, 610
AsuC2I CCSGG 2 cut(s) 216, 350
AsuHPI GGTGA 2 cut(s) 69, 404
AvaII GGWCC 1 cut(s) 610
BbvI GCAGC 3 cut(s) 171, 218, 448
BccI CCATC 4 cut(s) 35, 88, 253, 416
BceAI ACGGC 4 cut(s) 42, 143, 172, 543
BciT130I CCWGG 1 cut(s) 600
BclI TGATCA 1 cut(s) 541
BcnI CCSGG 2 cut(s) 216, 350
BcoDI GTCTC 1 cut(s) 418
BfmI CTRYAG 1 cut(s) 270
BmcAI AGTACT 1 cut(s) 444
Bme1390I CCNGG 3 cut(s) 216, 350, 600
Bme18I GGWCC 1 cut(s) 610
BmgT120I GGNCC 2 cut(s) 103, 610
BmiI GGNNCC 3 cut(s) 165, 406, 612
BmrFI CCNGG 3 cut(s) 216, 350, 600
BmsI GCATC 3 cut(s) 256, 334, 679
BpuMI CCSGG 2 cut(s) 216, 350
BsaBI GATNNNNATC 1 cut(s) 465
BsaJI CCNNGG 6 cut(s) 159, 188, 214, 348, 599, 756
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bsc4I CCNNNNNNNGG 3 cut(s) 247, 324, 503
Bse3DI GCAATG 2 cut(s) 431, 770
Bse8I GATNNNNATC 1 cut(s) 465
BseBI CCWGG 1 cut(s) 600
BseDI CCNNGG 6 cut(s) 159, 188, 214, 348, 599, 756
BseGI GGATG 4 cut(s) 113, 271, 349, 531
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 3 cut(s) 247, 324, 503
BseMI GCAATG 2 cut(s) 431, 770
BseX3I CGGCCG 1 cut(s) 153
BseXI GCAGC 3 cut(s) 171, 218, 448
BsgI GTGCAG 1 cut(s) 217
Bsh1236I CGCG 2 cut(s) 72, 125
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 3 cut(s) 104, 155, 595
BsiEI CGRYCG 1 cut(s) 156
BsiSI CCGG 2 cut(s) 216, 350
BslFI GGGAC 1 cut(s) 618
BslI CCNNNNNNNGG 3 cut(s) 247, 324, 503
BsmAI GTCTC 1 cut(s) 418
BsmBI CGTCTC 1 cut(s) 418
BsmFI GGGAC 1 cut(s) 618
BsnI GGCC 3 cut(s) 104, 155, 595
Bsp143I GATC 4 cut(s) 450, 460, 466, 541
BspANI GGCC 3 cut(s) 104, 155, 595
BspFNI CGCG 2 cut(s) 72, 125
BspLI GGNNCC 3 cut(s) 165, 406, 612
BspPI GGATC 1 cut(s) 474
BsrDI GCAATG 2 cut(s) 431, 770
BssECI CCNNGG 6 cut(s) 159, 188, 214, 348, 599, 756
BssMI GATC 4 cut(s) 450, 460, 466, 541
BssT1I CCWWGG 1 cut(s) 756
Bst2UI CCWGG 1 cut(s) 600
Bst4CI ACNGT 2 cut(s) 37, 660
BstDSI CCRYGG 2 cut(s) 159, 188
BstF5I GGATG 4 cut(s) 113, 271, 349, 531
BstFNI CGCG 2 cut(s) 72, 125
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 4 cut(s) 453, 463, 469, 544
BstMAI GTCTC 1 cut(s) 418
BstMBI GATC 4 cut(s) 450, 460, 466, 541
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 6 cut(s) 63, 184, 190, 237, 493, 760
BstNI CCWGG 1 cut(s) 600
BstSCI CCNGG 3 cut(s) 214, 348, 598
BstSFI CTRYAG 1 cut(s) 270
BstUI CGCG 2 cut(s) 72, 125
BstV1I GCAGC 3 cut(s) 171, 218, 448
BstX2I RGATCY 1 cut(s) 466
BstXI CCANNNNNNTGG 1 cut(s) 757
BstYI RGATCY 1 cut(s) 466
BstZI CGGCCG 1 cut(s) 153
BsuRI GGCC 3 cut(s) 104, 155, 595
BtgI CCRYGG 2 cut(s) 159, 188
BtgZI GCGATG 1 cut(s) 13
BtsCI GGATG 4 cut(s) 113, 271, 349, 531
BtsI GCAGTG 2 cut(s) 61, 307
BtsIMutI CAGTG 2 cut(s) 61, 307
CciNI GCGGCCGC 1 cut(s) 153
CfoI GCGC 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 103, 610
CseI GACGC 1 cut(s) 114
Csp6I GTAC 3 cut(s) 226, 443, 626
CviAII CATG 3 cut(s) 379, 509, 680
CviQI GTAC 3 cut(s) 226, 443, 626
DpnI GATC 4 cut(s) 452, 462, 468, 543
DpnII GATC 4 cut(s) 450, 460, 466, 541
DraI TTTAAA 1 cut(s) 550
DraIII CACNNNGTG 1 cut(s) 247
EaeI YGGCCR 1 cut(s) 153
EagI CGGCCG 1 cut(s) 153
EciI GGCGGA 1 cut(s) 109
EclXI CGGCCG 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 756
Eco47I GGWCC 1 cut(s) 610
Eco52I CGGCCG 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 598
EcoT14I CCWWGG 1 cut(s) 756
ErhI CCWWGG 1 cut(s) 756
Esp3I CGTCTC 1 cut(s) 418
FaeI CATG 3 cut(s) 382, 512, 683
FaiI YATR 9 cut(s) 20, 272, 356, 380, 418, 510, 536, 681, 686
FaqI GGGAC 1 cut(s) 618
FatI CATG 3 cut(s) 378, 508, 679
FauI CCCGC 1 cut(s) 245
FbaI TGATCA 1 cut(s) 541
FblI GTMKAC 1 cut(s) 128
FokI GGATG 4 cut(s) 100, 278, 356, 538
GlaI GCGC 1 cut(s) 73
HaeIII GGCC 3 cut(s) 104, 155, 595
HapII CCGG 2 cut(s) 216, 350
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 74
Hin1II CATG 3 cut(s) 382, 512, 683
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HinfI GANTC 4 cut(s) 204, 395, 579, 700
HpaI GTTAAC 1 cut(s) 742
HpaII CCGG 2 cut(s) 216, 350
HphI GGTGA 2 cut(s) 69, 404
Hpy166II GTNNAC 4 cut(s) 129, 506, 656, 742
Hpy188I TCNGA 3 cut(s) 96, 148, 209
Hpy188III TCNNGA 2 cut(s) 256, 464
Hpy8I GTNNAC 4 cut(s) 129, 506, 656, 742
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 3 cut(s) 147, 278, 707
HpyCH4III ACNGT 2 cut(s) 37, 660
HpyCH4IV ACGT 3 cut(s) 571, 652, 734
HpyCH4V TGCA 2 cut(s) 234, 436
HpyF10VI GCNNNNNNNGC 6 cut(s) 63, 184, 190, 237, 493, 760
HpySE526I ACGT 3 cut(s) 571, 652, 734
Hsp92II CATG 3 cut(s) 382, 512, 683
HspAI GCGC 1 cut(s) 72
Ksp22I TGATCA 1 cut(s) 541
KspAI GTTAAC 1 cut(s) 742
Kzo9I GATC 4 cut(s) 450, 460, 466, 541
LmnI GCTCC 3 cut(s) 149, 404, 760
LpnPI CCDG 7 cut(s) 154, 229, 363, 449, 585, 612, 627
Lsp1109I GCAGC 3 cut(s) 171, 218, 448
LweI GCATC 3 cut(s) 256, 334, 679
MaeII ACGT 3 cut(s) 571, 652, 734
MaeIII GTNAC 2 cut(s) 59, 560
MalI GATC 4 cut(s) 452, 462, 468, 543
MboI GATC 4 cut(s) 450, 460, 466, 541
MboII GAAGA 1 cut(s) 659
MfeI CAATTG 1 cut(s) 49
MflI RGATCY 1 cut(s) 466
MluCI AATT 5 cut(s) 49, 107, 426, 482, 537
MlyI GAGTC 2 cut(s) 198, 404
MmeI TCCRAC 2 cut(s) 181, 382
MnlI CCTC 5 cut(s) 34, 85, 127, 506, 606
MseI TTAA 3 cut(s) 549, 741, 772
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 2 cut(s) 216, 350
MspR9I CCNGG 3 cut(s) 216, 350, 600
MunI CAATTG 1 cut(s) 49
MvaI CCWGG 1 cut(s) 600
MvnI CGCG 2 cut(s) 72, 125
MwoI GCNNNNNNNGC 6 cut(s) 63, 184, 190, 237, 493, 760
NciI CCSGG 2 cut(s) 216, 350
NdeII GATC 4 cut(s) 450, 460, 466, 541
NlaIII CATG 3 cut(s) 382, 512, 683
NlaIV GGNNCC 3 cut(s) 165, 406, 612
NmuCI GTSAC 2 cut(s) 59, 560
NotI GCGGCCGC 1 cut(s) 153
PfeI GAWTC 2 cut(s) 579, 700
PflMI CCANNNNNTGG 2 cut(s) 247, 503
PleI GAGTC 2 cut(s) 198, 403
PpsI GAGTC 2 cut(s) 198, 403
Psp1406I AACGTT 1 cut(s) 734
Psp6I CCWGG 1 cut(s) 598
PspGI CCWGG 1 cut(s) 598
PspN4I GGNNCC 3 cut(s) 165, 406, 612
PspPI GGNCC 2 cut(s) 103, 610
PsuI RGATCY 1 cut(s) 466
PvuII CAGCTG 1 cut(s) 231
RsaI GTAC 3 cut(s) 227, 444, 627
RsaNI GTAC 3 cut(s) 226, 443, 626
SaqAI TTAA 3 cut(s) 549, 741, 772
Sau3AI GATC 4 cut(s) 450, 460, 466, 541
Sau96I GGNCC 2 cut(s) 103, 610
ScaI AGTACT 1 cut(s) 444
SchI GAGTC 2 cut(s) 198, 404
ScrFI CCNGG 3 cut(s) 216, 350, 600
SetI ASST 8 cut(s) 146, 186, 233, 283, 295, 574, 655, 737
SfaNI GCATC 3 cut(s) 256, 334, 679
SfcI CTRYAG 1 cut(s) 270
SinI GGWCC 1 cut(s) 610
Sse9I AATT 5 cut(s) 49, 107, 426, 482, 537
StyD4I CCNGG 3 cut(s) 214, 348, 598
StyI CCWWGG 1 cut(s) 756
TaaI ACNGT 2 cut(s) 37, 660
TaiI ACGT 3 cut(s) 574, 655, 737
TaqI TCGA 1 cut(s) 255
TasI AATT 5 cut(s) 49, 107, 426, 482, 537
TatI WGTACW 3 cut(s) 225, 442, 625
TauI GCSGC 8 cut(s) 57, 125, 136, 155, 158, 490, 595, 731
TfiI GAWTC 2 cut(s) 579, 700
Tru1I TTAA 3 cut(s) 549, 741, 772
Tru9I TTAA 3 cut(s) 549, 741, 772
TscAI CASTG 2 cut(s) 68, 307
TseFI GTSAC 2 cut(s) 59, 560
TseI GCWGC 4 cut(s) 11, 184, 231, 436
Tsp45I GTSAC 2 cut(s) 59, 560
TspDTI ATGAA 1 cut(s) 395
TspRI CASTG 2 cut(s) 68, 307
Van91I CCANNNNNTGG 2 cut(s) 247, 503
VpaK11BI GGWCC 1 cut(s) 610
XapI RAATTY 1 cut(s) 426
XmiI GTMKAC 1 cut(s) 128
ZrmI AGTACT 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.