Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040795.1

Orthogroup ID

OG0007236

Physical Location & Seq

Genomic Coordinates Forward (+)

1062 .. 2053

Gene Structure 992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040795.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgagcgttgctgcttctatatcctccatcgccaccgttcgtttccccaattgccgccgtcactgctttcgcgcctcaccatctctctcgcttcggataatggcccaattctcatcctccgccgcgtcttctccgccttccagctccgaagcggccgccgtggaacccaagaaaccgcccaagctgccgtggctcattgtcggactcggaaaccccggcaagaagtacagcagcacccgccacaatgtgggtttcgagatggtagatgctatagccgaagctgaagggatagctttgagcagtgtttctttcaaagcccttgttgggaaaggatttattggggatgccccggttatatttgccaaaccgcaaacttacatgaataaaagcggtgagtctgtaattaagctatctcacgagttgtcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004045 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0052689 GO:0140098 GO:0140101

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pept_tRNA_hydro

Protein Analysis

142

Amino Acids

14.98

Weight (kDa)

9.74

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18440 AT1G18440
fragaria_vesca	FvH4_5g12500 FvH4_5g12500 FvH4_5g12500 FvH4_5g12500 FvH4_5g12500
malus_domestica	MD06G1212500.v1.1 MD14G1223800.v1.1
prunus_persica	Prupe.5G218900_v2.0.a1 Prupe.5G218900_v2.0.a1
pyrus_communis	pycom06g19010 pycom14g18500
rosa_chinensis	RchiOBHm_Chr7g0184851
rosa_laevigata	RLG00000004949
rosa_multiflora	Rmu_sc0018428.1_g000001 Rmu_sc0040795.1_g000001 Rmu_ssc0000289.1_g000013
rosa_roxburghii	Rroxscaffold_3G00269330
rosa_rugosa	Rorug06G0465400
rosa_samantha	Rh7AG077500 Rh7BG069800 Rh7CG070600 Rh7DG070000
rosa_wichuraiana	Rw7G005790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	247
AccII	CGCG	2 cut(s)	72, 125
AcoI	YGGCCR	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	303
AdeI	CACNNNGTG	1 cut(s)	247
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	2 cut(s)	247, 324
AgsI	TTSAA	1 cut(s)	313
AluBI	AGCT	5 cut(s)	144, 184, 281, 293, 409
AluI	AGCT	5 cut(s)	144, 184, 281, 293, 409
AoxI	GGCC	2 cut(s)	102, 153
ApeKI	GCWGC	3 cut(s)	11, 184, 231
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	103
AsuC2I	CCSGG	2 cut(s)	216, 350
AsuHPI	GGTGA	2 cut(s)	69, 404
BauI	CACGAG	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	171, 243
BccI	CCATC	3 cut(s)	35, 88, 253
BceAI	ACGGC	3 cut(s)	42, 143, 172
BcnI	CCSGG	2 cut(s)	216, 350
BfmI	CTRYAG	1 cut(s)	270
BisI	GCNGC	7 cut(s)	12, 55, 123, 153, 156, 185, 232
BlsI	GCNGC	7 cut(s)	13, 56, 124, 154, 157, 186, 233
Bme1390I	CCNGG	2 cut(s)	216, 350
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	2 cut(s)	216, 350
BmsI	GCATC	2 cut(s)	256, 334
BpiI	GAAGAC	1 cut(s)	120
BpuMI	CCSGG	2 cut(s)	216, 350
BsaJI	CCNNGG	4 cut(s)	159, 188, 214, 348
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 324
BseDI	CCNNGG	4 cut(s)	159, 188, 214, 348
BseGI	GGATG	2 cut(s)	113, 349
BseLI	CCNNNNNNNGG	2 cut(s)	247, 324
BseX3I	CGGCCG	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	171, 243
Bsh1236I	CGCG	2 cut(s)	72, 125
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	104, 155
BsiEI	CGRYCG	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	216, 350
BslI	CCNNNNNNNGG	2 cut(s)	247, 324
BsnI	GGCC	2 cut(s)	104, 155
BspANI	GGCC	2 cut(s)	104, 155
BspFNI	CGCG	2 cut(s)	72, 125
BspLI	GGNNCC	1 cut(s)	165
BssECI	CCNNGG	4 cut(s)	159, 188, 214, 348
BssSI	CACGAG	1 cut(s)	416
Bst2BI	CACGAG	1 cut(s)	416
Bst4CI	ACNGT	1 cut(s)	37
BstDSI	CCRYGG	2 cut(s)	159, 188
BstF5I	GGATG	2 cut(s)	113, 349
BstFNI	CGCG	2 cut(s)	72, 125
BstHHI	GCGC	1 cut(s)	74
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 184, 190, 237
BstSCI	CCNGG	2 cut(s)	214, 348
BstSFI	CTRYAG	1 cut(s)	270
BstUI	CGCG	2 cut(s)	72, 125
BstV1I	GCAGC	2 cut(s)	171, 243
BstV2I	GAAGAC	1 cut(s)	120
BstZI	CGGCCG	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	104, 155
BtgI	CCRYGG	2 cut(s)	159, 188
BtgZI	GCGATG	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	113, 349
BtsI	GCAGTG	2 cut(s)	61, 307
BtsIMutI	CAGTG	2 cut(s)	61, 307
CciNI	GCGGCCGC	1 cut(s)	153
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	103
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	1 cut(s)	379
CviQI	GTAC	1 cut(s)	226
DraIII	CACNNNGTG	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	153
EagI	CGGCCG	1 cut(s)	153
EciI	GGCGGA	2 cut(s)	109, 123
EclXI	CGGCCG	1 cut(s)	153
Eco52I	CGGCCG	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	303
FaeI	CATG	1 cut(s)	382
FaiI	YATR	4 cut(s)	20, 272, 356, 380
FatI	CATG	1 cut(s)	378
FauI	CCCGC	1 cut(s)	245
Fnu4HI	GCNGC	7 cut(s)	12, 55, 123, 153, 156, 185, 232
FokI	GGATG	2 cut(s)	100, 356
Fsp4HI	GCNGC	7 cut(s)	12, 55, 123, 153, 156, 185, 232
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	7 cut(s)	12, 55, 123, 153, 156, 185, 232
HaeIII	GGCC	2 cut(s)	104, 155
HapII	CCGG	2 cut(s)	216, 350
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	382
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	2 cut(s)	204, 395
HpaII	CCGG	2 cut(s)	216, 350
HphI	GGTGA	2 cut(s)	69, 404
Hpy188I	TCNGA	4 cut(s)	96, 148, 203, 209
Hpy188III	TCNNGA	3 cut(s)	256, 416, 426
HpyAV	CCTTC	2 cut(s)	147, 278
HpyCH4III	ACNGT	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 184, 190, 237
Hsp92II	CATG	1 cut(s)	382
HspAI	GCGC	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	3 cut(s)	154, 229, 363
Lsp1109I	GCAGC	2 cut(s)	171, 243
LweI	GCATC	2 cut(s)	256, 334
MaeIII	GTNAC	1 cut(s)	59
MboII	GAAGA	1 cut(s)	120
MfeI	CAATTG	1 cut(s)	49
MluCI	AATT	3 cut(s)	49, 107, 402
MlyI	GAGTC	2 cut(s)	198, 404
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	3 cut(s)	34, 85, 127
MseI	TTAA	1 cut(s)	405
MspI	CCGG	2 cut(s)	216, 350
MspR9I	CCNGG	2 cut(s)	216, 350
MunI	CAATTG	1 cut(s)	49
MvnI	CGCG	2 cut(s)	72, 125
MwoI	GCNNNNNNNGC	4 cut(s)	63, 184, 190, 237
NciI	CCSGG	2 cut(s)	216, 350
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	59
NotI	GCGGCCGC	1 cut(s)	153
PflMI	CCANNNNNTGG	1 cut(s)	247
PkrI	GCNGC	7 cut(s)	13, 56, 124, 154, 157, 186, 233
PleI	GAGTC	2 cut(s)	198, 403
PpsI	GAGTC	2 cut(s)	198, 403
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	103
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	7 cut(s)	12, 55, 123, 153, 156, 185, 232
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	2 cut(s)	198, 404
ScrFI	CCNGG	2 cut(s)	216, 350
SetI	ASST	5 cut(s)	146, 186, 283, 295, 411
SfaNI	GCATC	2 cut(s)	256, 334
SfcI	CTRYAG	1 cut(s)	270
Sse9I	AATT	3 cut(s)	49, 107, 402
StyD4I	CCNGG	2 cut(s)	214, 348
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	255
TasI	AATT	3 cut(s)	49, 107, 402
TatI	WGTACW	1 cut(s)	225
TauI	GCSGC	4 cut(s)	57, 125, 155, 158
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	2 cut(s)	68, 307
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	3 cut(s)	11, 184, 231
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	395
TspRI	CASTG	2 cut(s)	68, 307
Van91I	CCANNNNNTGG	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.