Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007236

Physical Location & Seq

Genomic Coordinates Reverse (-)

22553080 .. 22554961

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g19010.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAACGTTGCTGCTTCCCTATCATCCATCGCCACCGTCCGCTTCCCCAATTGCCACCGCTGCTTCGGCTTCTCAAAACCCCTAATTCAATCTCCGTCGCTTTGGATAATGGCCCAATTCTCGTCATCGCAATCTCCCTCTGCCGCGCCGGAAACGGCGGTTGTGGAAGCCAAGACGCCCCCCAAGCAGCCGTGGCTCATCGTCGGCCTCGGAAACCCCGGGAAGAAGTACAACAGCACCCGCCACAATGTGGGTTTTGAGATGGTGGATGCCATTGCTGAAGCTGAAGGGATACCTATGAGCAGTGTTTCTTTCAAAGCCCTTGTTGGAAAAGGTCTTATTGGGGATGTTCCGGTTATATTTGCCAAACCACAAACTTACATGAATAAAAGCGGTGAGTCTGTTGGATCCATTGTGTCGTATTACAAGATTCCATTGAAGCAAGTACTTGTGATATTTGATGATCTAGATCTTCCCTTTGGAAAACTGCGGATGTTGCCGAAAGGTGGACATGGAGGACACAATGGGATGAGGAGTGTCATTGATCGCTTTAAGGGGAGTCGAGATTTTCCTCGTTTAAGAATCGGCATTGGACGCCCTCCTGGGAAAATGGATCCTGTCAACTTTGTTCTTCGTCCATTTACTAAACAAGAACAACAGGAGCTGAATTTTACATTTCAAGAAGGTGTAGAAGCGGTGCGTATTCTTTTGCTTGAGGGGTTCAACAAAAGCGCAACTTTTGTTAATAGTGCCAAACCCTTGGAACAATGCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004045 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0052689 GO:0140098 GO:0140101

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pept_tRNA_hydro

Protein Analysis

259

Amino Acids

28.17

Weight (kDa)

9.63

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18440 AT1G18440
fragaria_vesca	FvH4_5g12500 FvH4_5g12500 FvH4_5g12500 FvH4_5g12500 FvH4_5g12500
malus_domestica	MD06G1212500.v1.1 MD14G1223800.v1.1
prunus_persica	Prupe.5G218900_v2.0.a1 Prupe.5G218900_v2.0.a1
pyrus_communis	pycom06g19010 pycom14g18500
rosa_chinensis	RchiOBHm_Chr7g0184851
rosa_laevigata	RLG00000004949
rosa_multiflora	Rmu_sc0018428.1_g000001 Rmu_sc0040795.1_g000001 Rmu_ssc0000289.1_g000013
rosa_roxburghii	Rroxscaffold_3G00269330
rosa_rugosa	Rorug06G0465400
rosa_samantha	Rh7AG077500 Rh7BG069800 Rh7CG070600 Rh7DG070000
rosa_wichuraiana	Rw7G005790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	250
AccII	CGCG	1 cut(s)	146
AciI	CCGC	9 cut(s)	40, 58, 144, 158, 241, 393, 490, 695, 771
AclI	AACGTT	1 cut(s)	6
AclWI	GGATC	4 cut(s)	402, 415, 608, 621
AcsI	RAATTY	1 cut(s)	667
AcuI	CTGAAG	2 cut(s)	300, 306
AcyI	GRCGYC	2 cut(s)	176, 595
AdeI	CACNNNGTG	1 cut(s)	250
AfaI	GTAC	2 cut(s)	230, 447
AfiI	CCNNNNNNNGG	2 cut(s)	250, 506
AgsI	TTSAA	5 cut(s)	89, 316, 439, 680, 724
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	2 cut(s)	284, 664
AluI	AGCT	2 cut(s)	284, 664
AlwI	GGATC	4 cut(s)	402, 415, 608, 621
AlwNI	CAGNNNCTG	1 cut(s)	664
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	2 cut(s)	111, 205
ApeKI	GCWGC	3 cut(s)	11, 60, 187
ApoI	RAATTY	1 cut(s)	667
AspLEI	GCGC	2 cut(s)	148, 734
AspS9I	GGNCC	1 cut(s)	112
AsuC2I	CCSGG	2 cut(s)	219, 220
AsuHPI	GGTGA	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	218
BamHI	GGATCC	2 cut(s)	407, 613
BbvI	GCAGC	2 cut(s)	47, 199
BccI	CCATC	2 cut(s)	35, 256
BceAI	ACGGC	2 cut(s)	171, 175
BciT130I	CCWGG	1 cut(s)	603
BciVI	GTATCC	1 cut(s)	285
BcnI	CCSGG	2 cut(s)	219, 220
BfaI	CTAG	1 cut(s)	467
BfuI	GTATCC	1 cut(s)	285
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	4 cut(s)	12, 61, 144, 188
BlsI	GCNGC	4 cut(s)	13, 62, 145, 189
BmcAI	AGTACT	1 cut(s)	447
Bme1390I	CCNGG	3 cut(s)	219, 220, 603
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	2 cut(s)	409, 615
BmrFI	CCNGG	3 cut(s)	219, 220, 603
BmsI	GCATC	1 cut(s)	259
BpuEI	CTTGAG	1 cut(s)	734
BpuMI	CCSGG	2 cut(s)	219, 220
BsaBI	GATNNNNATC	1 cut(s)	468
BsaHI	GRCGYC	2 cut(s)	176, 595
BsaJI	CCNNGG	6 cut(s)	191, 208, 217, 218, 602, 759
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 506
Bse3DI	GCAATG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	6 cut(s)	191, 208, 217, 218, 602, 759
BseGI	GGATG	5 cut(s)	23, 274, 352, 498, 534
BseJI	GATNNNNATC	1 cut(s)	468
BseLI	CCNNNNNNNGG	2 cut(s)	250, 506
BseMI	GCAATG	1 cut(s)	273
BseRI	GAGGAG	1 cut(s)	547
BseXI	GCAGC	2 cut(s)	47, 199
Bsh1236I	CGCG	1 cut(s)	146
BshFI	GGCC	2 cut(s)	113, 207
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	3 cut(s)	149, 219, 353
BslI	CCNNNNNNNGG	2 cut(s)	250, 506
BsnI	GGCC	2 cut(s)	113, 207
BsoBI	CYCGRG	1 cut(s)	218
Bsp143I	GATC	5 cut(s)	407, 463, 469, 544, 613
BspACI	CCGC	9 cut(s)	40, 58, 144, 158, 241, 393, 490, 695, 771
BspANI	GGCC	2 cut(s)	113, 207
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	2 cut(s)	409, 615
BspPI	GGATC	4 cut(s)	402, 415, 608, 621
BsrDI	GCAATG	1 cut(s)	273
BssECI	CCNNGG	6 cut(s)	191, 208, 217, 218, 602, 759
BssMI	GATC	5 cut(s)	407, 463, 469, 544, 613
BssNI	GRCGYC	2 cut(s)	176, 595
BssT1I	CCWWGG	1 cut(s)	759
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	1 cut(s)	37
BstACI	GRCGYC	2 cut(s)	176, 595
BstDSI	CCRYGG	1 cut(s)	191
BstF5I	GGATG	5 cut(s)	23, 274, 352, 498, 534
BstFNI	CGCG	1 cut(s)	146
BstHHI	GCGC	2 cut(s)	148, 734
BstKTI	GATC	5 cut(s)	410, 466, 472, 547, 616
BstMBI	GATC	5 cut(s)	407, 463, 469, 544, 613
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 66, 184, 193, 496, 594
BstNI	CCWGG	1 cut(s)	603
BstSCI	CCNGG	3 cut(s)	217, 218, 601
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	2 cut(s)	47, 199
BstX2I	RGATCY	3 cut(s)	407, 469, 613
BstXI	CCANNNNNNTGG	1 cut(s)	760
BstYI	RGATCY	3 cut(s)	407, 469, 613
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	113, 207
BtgI	CCRYGG	1 cut(s)	191
BtgZI	GCGATG	2 cut(s)	13, 111
BtsCI	GGATG	5 cut(s)	23, 274, 352, 498, 534
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	310
CaiI	CAGNNNCTG	1 cut(s)	664
CfoI	GCGC	2 cut(s)	148, 734
Cfr13I	GGNCC	1 cut(s)	112
Cfr9I	CCCGGG	1 cut(s)	218
CseI	GACGC	2 cut(s)	184, 603
Csp6I	GTAC	2 cut(s)	229, 446
CviAII	CATG	2 cut(s)	382, 512
CviJI	RGCY	9 cut(s)	69, 113, 170, 190, 196, 207, 284, 320, 664
CviKI_1	RGCY	9 cut(s)	69, 113, 170, 190, 196, 207, 284, 320, 664
CviQI	GTAC	2 cut(s)	229, 446
DpnI	GATC	5 cut(s)	409, 465, 471, 546, 615
DpnII	GATC	5 cut(s)	407, 463, 469, 544, 613
DraIII	CACNNNGTG	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	759
Eco57I	CTGAAG	2 cut(s)	300, 306
Eco88I	CYCGRG	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	759
ErhI	CCWWGG	1 cut(s)	759
FaeI	CATG	2 cut(s)	385, 515
FaiI	YATR	4 cut(s)	299, 359, 383, 513
FalI	AAGNNNNNCTT	2 cut(s)	721, 753
FatI	CATG	2 cut(s)	381, 511
FauI	CCCGC	1 cut(s)	248
Fnu4HI	GCNGC	4 cut(s)	12, 61, 144, 188
FokI	GGATG	5 cut(s)	10, 281, 359, 505, 541
Fsp4HI	GCNGC	4 cut(s)	12, 61, 144, 188
FspBI	CTAG	1 cut(s)	467
GlaI	GCGC	2 cut(s)	147, 733
GluI	GCNGC	4 cut(s)	12, 61, 144, 188
HaeIII	GGCC	2 cut(s)	113, 207
HapII	CCGG	3 cut(s)	149, 219, 353
HgaI	GACGC	2 cut(s)	184, 603
HhaI	GCGC	2 cut(s)	148, 734
Hin1I	GRCGYC	2 cut(s)	176, 595
Hin1II	CATG	2 cut(s)	385, 515
Hin6I	GCGC	2 cut(s)	146, 732
HinP1I	GCGC	2 cut(s)	146, 732
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HinfI	GANTC	4 cut(s)	398, 430, 559, 582
HpaII	CCGG	3 cut(s)	149, 219, 353
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	2 cut(s)	509, 622
Hpy188I	TCNGA	1 cut(s)	212
Hpy188III	TCNNGA	3 cut(s)	467, 563, 680
Hpy8I	GTNNAC	2 cut(s)	509, 622
Hpy99I	CGWCG	2 cut(s)	100, 206
HpyAV	CCTTC	2 cut(s)	281, 677
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 66, 184, 193, 496, 594
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	2 cut(s)	176, 595
Hsp92II	CATG	2 cut(s)	385, 515
HspAI	GCGC	2 cut(s)	146, 732
Kzo9I	GATC	5 cut(s)	407, 463, 469, 544, 613
LmnI	GCTCC	1 cut(s)	661
LpnPI	CCDG	7 cut(s)	162, 232, 366, 588, 615, 630, 644
Lsp1109I	GCAGC	2 cut(s)	47, 199
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	1 cut(s)	6
MalI	GATC	5 cut(s)	409, 465, 471, 546, 615
MboI	GATC	5 cut(s)	407, 463, 469, 544, 613
MboII	GAAGA	3 cut(s)	235, 464, 623
MfeI	CAATTG	1 cut(s)	49
MflI	RGATCY	3 cut(s)	407, 469, 613
MluCI	AATT	4 cut(s)	49, 84, 116, 667
MlyI	GAGTC	2 cut(s)	407, 568
MmeI	TCCRAC	2 cut(s)	307, 385
MnlI	CCTC	7 cut(s)	148, 218, 509, 525, 582, 609, 709
MseI	TTAA	4 cut(s)	552, 578, 744, 775
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	3 cut(s)	149, 219, 353
MspR9I	CCNGG	3 cut(s)	219, 220, 603
MunI	CAATTG	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	603
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	6 cut(s)	60, 66, 184, 193, 496, 594
NciI	CCSGG	2 cut(s)	219, 220
NdeII	GATC	5 cut(s)	407, 463, 469, 544, 613
NlaIII	CATG	2 cut(s)	385, 515
NlaIV	GGNNCC	2 cut(s)	409, 615
PfeI	GAWTC	2 cut(s)	430, 582
PflMI	CCANNNNNTGG	1 cut(s)	250
PkrI	GCNGC	4 cut(s)	13, 62, 145, 189
PleI	GAGTC	2 cut(s)	406, 567
PpsI	GAGTC	2 cut(s)	406, 567
Psp1406I	AACGTT	1 cut(s)	6
Psp6I	CCWGG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	2 cut(s)	409, 615
PspPI	GGNCC	1 cut(s)	112
PstNI	CAGNNNCTG	1 cut(s)	664
PsuI	RGATCY	3 cut(s)	407, 469, 613
RsaI	GTAC	2 cut(s)	230, 447
RsaNI	GTAC	2 cut(s)	229, 446
SaqAI	TTAA	4 cut(s)	552, 578, 744, 775
SatI	GCNGC	4 cut(s)	12, 61, 144, 188
Sau3AI	GATC	5 cut(s)	407, 463, 469, 544, 613
Sau96I	GGNCC	1 cut(s)	112
ScaI	AGTACT	1 cut(s)	447
SchI	GAGTC	2 cut(s)	407, 568
ScrFI	CCNGG	3 cut(s)	219, 220, 603
SetI	ASST	7 cut(s)	9, 286, 298, 337, 508, 666, 688
SfaNI	GCATC	1 cut(s)	259
SmaI	CCCGGG	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
Sse9I	AATT	4 cut(s)	49, 84, 116, 667
SsiI	CCGC	9 cut(s)	40, 58, 144, 158, 241, 393, 490, 695, 771
SspMI	CTAG	1 cut(s)	467
StyD4I	CCNGG	3 cut(s)	217, 218, 601
StyI	CCWWGG	1 cut(s)	759
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	1 cut(s)	562
TasI	AATT	4 cut(s)	49, 84, 116, 667
TatI	WGTACW	2 cut(s)	228, 445
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	430, 582
Tru1I	TTAA	4 cut(s)	552, 578, 744, 775
Tru9I	TTAA	4 cut(s)	552, 578, 744, 775
TscAI	CASTG	1 cut(s)	310
TseI	GCWGC	3 cut(s)	11, 60, 187
TspDTI	ATGAA	2 cut(s)	17, 398
TspGWI	ACGGA	1 cut(s)	84
TspMI	CCCGGG	1 cut(s)	218
TspRI	CASTG	1 cut(s)	310
Van91I	CCANNNNNTGG	1 cut(s)	250
XapI	RAATTY	1 cut(s)	667
XbaI	TCTAGA	1 cut(s)	466
XmaI	CCCGGG	1 cut(s)	218
XspI	CTAG	1 cut(s)	467
ZrmI	AGTACT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.