Rh7BG069800

Belongs to the PTH family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0007236
Physical Location & Seq
Reverse (-)
4639593 .. 4641898
2306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG069800.1

Sequence Viewer

Length: 852 bp
ATGTCCATACTTCTCCAACACTCAAAACAATTATTTGCTCTTCATACAAATCACATCCAATCAAAAATGAGCGTCGCTGCTTCTATATCCTCCATCGCCACCGTTCGTTTCCCCAATTGCCGCCGCCACTGCTTTCGCGCCTCACCATCTCTCTCGCTTCGGATAATGGCCCAATTCTCCTCCTCCTCCTCCTCCTCCGCCACGTCTACGCCGCCTTCCAGCTCCGAAGCGGCCGCCGTGGAACCCAAGAAACCGCCCAAGCTGCCGTGGCTCATTGTCGGACTCGGAAACCCCGGCAAGAAGTACAGCAGCACCCGCCACAATGTGGGTTTCGAGATGGTGGATGCTATAGCCGAAGCTGAAGGGATAGCTTTGAGCAGTGTTTCTTTCAAAGCCCTTGTTGGGAAAGGATTTATTGGGGATGCCCCGGTTATATTTGCCAAACCGCAAACTTACATGAATAAAAGCGGTGAGTCTGTTGGAGCCATCGTCTCATATTACAAAATTCCATTGCAGCAAGTACTTGTGATCTTTGACGATCTGGATCTGCCATTCGCAAAATTGCGGCTGTTGCCAAAGGGTGGACATGGAGGACAAAATGGGATGAGAAGTATAATTGATCATTTTAAAGGAAGCCGTGACTTTCCACGTTTGAGAATCGGCATTGGGCGGCCTCCTGGGAAAATGGACCCTGCCAACTTTGTTCTTCGTCCCTTTACTAAACAAGAACGTGAAGAGTTAGATTTTACACTTCAACATGGCATAGATGCGGTGCGGATTCTCTTGCTTGAAGGGTTCAATAAAGCGGCAACGTTTGTTAACACAGCGAAACCCTTGGAGCAATGTGGTTAA

Protein Analysis

283

Amino Acids

30.76

Weight (kDa)

9.83

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pept_tRNA_hydro PF01195 91 - 272 1.3e-65 Peptidyl-tRNA hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 325, 581
AccI GTMKAC 1 cut(s) 206
AccII CGCG 1 cut(s) 138
AclI AACGTT 1 cut(s) 812
AclWI GGATC 1 cut(s) 552
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 1 cut(s) 504
AcuI CTGAAG 1 cut(s) 381
AdeI CACNNNGTG 1 cut(s) 325
AfaI GTAC 2 cut(s) 305, 522
AfiI CCNNNNNNNGG 3 cut(s) 325, 402, 581
AgsI TTSAA 4 cut(s) 391, 755, 791, 799
AjiI CACGTC 1 cut(s) 204
AjnI CCWGG 1 cut(s) 676
AluBI AGCT 4 cut(s) 222, 262, 359, 371
AluI AGCT 4 cut(s) 222, 262, 359, 371
Alw26I GTCTC 1 cut(s) 496
AlwI GGATC 1 cut(s) 552
AoxI GGCC 3 cut(s) 168, 231, 671
ApeKI GCWGC 4 cut(s) 77, 262, 309, 514
ApoI RAATTY 1 cut(s) 504
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 2 cut(s) 169, 688
AsuC2I CCSGG 2 cut(s) 294, 428
AsuHPI GGTGA 2 cut(s) 135, 482
AvaII GGWCC 1 cut(s) 688
BbvI GCAGC 4 cut(s) 64, 249, 321, 526
BccI CCATC 4 cut(s) 101, 154, 331, 494
BceAI ACGGC 3 cut(s) 221, 250, 621
BciT130I CCWGG 1 cut(s) 678
BclI TGATCA 1 cut(s) 619
BcnI CCSGG 2 cut(s) 294, 428
BcoDI GTCTC 1 cut(s) 496
BfmI CTRYAG 1 cut(s) 348
BmcAI AGTACT 1 cut(s) 522
Bme1390I CCNGG 3 cut(s) 294, 428, 678
Bme18I GGWCC 1 cut(s) 688
BmgBI CACGTC 1 cut(s) 204
BmgT120I GGNCC 2 cut(s) 169, 688
BmiI GGNNCC 3 cut(s) 243, 484, 690
BmrFI CCNGG 3 cut(s) 294, 428, 678
BmsI GCATC 3 cut(s) 334, 412, 757
BpuMI CCSGG 2 cut(s) 294, 428
BsaBI GATNNNNATC 1 cut(s) 543
BsaJI CCNNGG 6 cut(s) 237, 266, 292, 426, 677, 834
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bsc4I CCNNNNNNNGG 3 cut(s) 325, 402, 581
Bse3DI GCAATG 2 cut(s) 509, 848
Bse8I GATNNNNATC 1 cut(s) 543
BseBI CCWGG 1 cut(s) 678
BseDI CCNNGG 6 cut(s) 237, 266, 292, 426, 677, 834
BseGI GGATG 4 cut(s) 54, 349, 427, 609
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 3 cut(s) 325, 402, 581
BseMI GCAATG 2 cut(s) 509, 848
BseRI GAGGAG 6 cut(s) 169, 172, 175, 178, 181, 184
BseX3I CGGCCG 1 cut(s) 231
BseXI GCAGC 4 cut(s) 64, 249, 321, 526
Bsh1236I CGCG 1 cut(s) 138
Bsh1285I CGRYCG 1 cut(s) 234
BshFI GGCC 3 cut(s) 170, 233, 673
BsiEI CGRYCG 1 cut(s) 234
BsiSI CCGG 2 cut(s) 294, 428
BslFI GGGAC 1 cut(s) 696
BslI CCNNNNNNNGG 3 cut(s) 325, 402, 581
BsmAI GTCTC 1 cut(s) 496
BsmBI CGTCTC 1 cut(s) 496
BsmFI GGGAC 1 cut(s) 696
BsnI GGCC 3 cut(s) 170, 233, 673
Bsp143I GATC 4 cut(s) 528, 538, 544, 619
BspANI GGCC 3 cut(s) 170, 233, 673
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 3 cut(s) 243, 484, 690
BspPI GGATC 1 cut(s) 552
BspQI GCTCTTC 1 cut(s) 45
BsrDI GCAATG 2 cut(s) 509, 848
BssECI CCNNGG 6 cut(s) 237, 266, 292, 426, 677, 834
BssMI GATC 4 cut(s) 528, 538, 544, 619
BssT1I CCWWGG 1 cut(s) 834
Bst2UI CCWGG 1 cut(s) 678
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 2 cut(s) 45, 729
BstDSI CCRYGG 2 cut(s) 237, 266
BstF5I GGATG 4 cut(s) 54, 349, 427, 609
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 4 cut(s) 531, 541, 547, 622
BstMAI GTCTC 1 cut(s) 496
BstMBI GATC 4 cut(s) 528, 538, 544, 619
BstMCI CGRYCG 1 cut(s) 234
BstMWI GCNNNNNNNGC 5 cut(s) 129, 262, 268, 315, 571
BstNI CCWGG 1 cut(s) 678
BstSCI CCNGG 3 cut(s) 292, 426, 676
BstSFI CTRYAG 1 cut(s) 348
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 4 cut(s) 64, 249, 321, 526
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BstZI CGGCCG 1 cut(s) 231
BsuRI GGCC 3 cut(s) 170, 233, 673
BtgI CCRYGG 2 cut(s) 237, 266
BtgZI GCGATG 1 cut(s) 79
BtrI CACGTC 1 cut(s) 204
BtsCI GGATG 4 cut(s) 54, 349, 427, 609
BtsI GCAGTG 2 cut(s) 127, 385
BtsIMutI CAGTG 2 cut(s) 127, 385
CciNI GCGGCCGC 1 cut(s) 231
CfoI GCGC 1 cut(s) 140
Cfr13I GGNCC 2 cut(s) 169, 688
CseI GACGC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 304, 521
CviAII CATG 3 cut(s) 457, 587, 758
CviQI GTAC 2 cut(s) 304, 521
DpnI GATC 4 cut(s) 530, 540, 546, 621
DpnII GATC 4 cut(s) 528, 538, 544, 619
DraI TTTAAA 1 cut(s) 628
DraIII CACNNNGTG 1 cut(s) 325
EaeI YGGCCR 1 cut(s) 231
EagI CGGCCG 1 cut(s) 231
Eam1104I CTCTTC 2 cut(s) 45, 729
EarI CTCTTC 2 cut(s) 45, 729
EciI GGCGGA 1 cut(s) 187
EclXI CGGCCG 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 834
Eco47I GGWCC 1 cut(s) 688
Eco52I CGGCCG 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 676
EcoT14I CCWWGG 1 cut(s) 834
ErhI CCWWGG 1 cut(s) 834
Esp3I CGTCTC 1 cut(s) 496
FaeI CATG 3 cut(s) 460, 590, 761
FaqI GGGAC 1 cut(s) 696
FatI CATG 3 cut(s) 456, 586, 757
FauI CCCGC 1 cut(s) 323
FbaI TGATCA 1 cut(s) 619
FblI GTMKAC 1 cut(s) 206
FokI GGATG 4 cut(s) 41, 356, 434, 616
GlaI GCGC 1 cut(s) 139
HaeIII GGCC 3 cut(s) 170, 233, 673
HapII CCGG 2 cut(s) 294, 428
HgaI GACGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 140
Hin1II CATG 3 cut(s) 460, 590, 761
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 1 cut(s) 820
HindII GTYRAC 1 cut(s) 820
HinfI GANTC 4 cut(s) 282, 473, 657, 778
HpaI GTTAAC 1 cut(s) 820
HpaII CCGG 2 cut(s) 294, 428
HphI GGTGA 2 cut(s) 135, 482
Hpy166II GTNNAC 3 cut(s) 207, 584, 820
Hpy188I TCNGA 4 cut(s) 162, 226, 281, 287
Hpy188III TCNNGA 2 cut(s) 334, 542
Hpy8I GTNNAC 3 cut(s) 207, 584, 820
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 3 cut(s) 225, 356, 785
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4IV ACGT 4 cut(s) 203, 649, 730, 812
HpyCH4V TGCA 1 cut(s) 514
HpyF10VI GCNNNNNNNGC 5 cut(s) 129, 262, 268, 315, 571
HpySE526I ACGT 4 cut(s) 203, 649, 730, 812
Hsp92II CATG 3 cut(s) 460, 590, 761
HspAI GCGC 1 cut(s) 138
Ksp22I TGATCA 1 cut(s) 619
KspAI GTTAAC 1 cut(s) 820
Kzo9I GATC 4 cut(s) 528, 538, 544, 619
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 3 cut(s) 227, 482, 838
LpnPI CCDG 7 cut(s) 232, 307, 441, 527, 663, 690, 705
Lsp1109I GCAGC 4 cut(s) 64, 249, 321, 526
LweI GCATC 3 cut(s) 334, 412, 757
MaeII ACGT 4 cut(s) 203, 649, 730, 812
MaeIII GTNAC 1 cut(s) 638
MalI GATC 4 cut(s) 530, 540, 546, 621
MboI GATC 4 cut(s) 528, 538, 544, 619
MboII GAAGA 3 cut(s) 32, 698, 746
MfeI CAATTG 1 cut(s) 115
MflI RGATCY 1 cut(s) 544
MluCI AATT 6 cut(s) 29, 115, 173, 504, 560, 615
MlyI GAGTC 2 cut(s) 276, 482
MmeI TCCRAC 3 cut(s) 40, 259, 460
MseI TTAA 3 cut(s) 627, 819, 850
MspI CCGG 2 cut(s) 294, 428
MspR9I CCNGG 3 cut(s) 294, 428, 678
MunI CAATTG 1 cut(s) 115
MvaI CCWGG 1 cut(s) 678
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 5 cut(s) 129, 262, 268, 315, 571
NciI CCSGG 2 cut(s) 294, 428
NdeII GATC 4 cut(s) 528, 538, 544, 619
NlaIII CATG 3 cut(s) 460, 590, 761
NlaIV GGNNCC 3 cut(s) 243, 484, 690
NmuCI GTSAC 1 cut(s) 638
NotI GCGGCCGC 1 cut(s) 231
PciSI GCTCTTC 1 cut(s) 45
PfeI GAWTC 2 cut(s) 657, 778
PflMI CCANNNNNTGG 2 cut(s) 325, 581
PleI GAGTC 2 cut(s) 276, 481
PpsI GAGTC 2 cut(s) 276, 481
Psp1406I AACGTT 1 cut(s) 812
Psp6I CCWGG 1 cut(s) 676
PspGI CCWGG 1 cut(s) 676
PspN4I GGNNCC 3 cut(s) 243, 484, 690
PspPI GGNCC 2 cut(s) 169, 688
PsuI RGATCY 1 cut(s) 544
RsaI GTAC 2 cut(s) 305, 522
RsaNI GTAC 2 cut(s) 304, 521
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 3 cut(s) 627, 819, 850
Sau3AI GATC 4 cut(s) 528, 538, 544, 619
Sau96I GGNCC 2 cut(s) 169, 688
ScaI AGTACT 1 cut(s) 522
SchI GAGTC 2 cut(s) 276, 482
ScrFI CCNGG 3 cut(s) 294, 428, 678
SetI ASST 8 cut(s) 206, 224, 264, 361, 373, 652, 733, 815
SfaNI GCATC 3 cut(s) 334, 412, 757
SfcI CTRYAG 1 cut(s) 348
SinI GGWCC 1 cut(s) 688
Sse9I AATT 6 cut(s) 29, 115, 173, 504, 560, 615
StyD4I CCNGG 3 cut(s) 292, 426, 676
StyI CCWWGG 1 cut(s) 834
TaaI ACNGT 1 cut(s) 103
TaiI ACGT 4 cut(s) 206, 652, 733, 815
TaqI TCGA 1 cut(s) 333
TasI AATT 6 cut(s) 29, 115, 173, 504, 560, 615
TatI WGTACW 2 cut(s) 303, 520
TauI GCSGC 8 cut(s) 123, 126, 214, 233, 236, 568, 673, 809
TfiI GAWTC 2 cut(s) 657, 778
Tru1I TTAA 3 cut(s) 627, 819, 850
Tru9I TTAA 3 cut(s) 627, 819, 850
TscAI CASTG 2 cut(s) 134, 385
TseFI GTSAC 1 cut(s) 638
TseI GCWGC 4 cut(s) 77, 262, 309, 514
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 2 cut(s) 32, 473
TspRI CASTG 2 cut(s) 134, 385
Van91I CCANNNNNTGG 2 cut(s) 325, 581
VpaK11BI GGWCC 1 cut(s) 688
XapI RAATTY 1 cut(s) 504
XmiI GTMKAC 1 cut(s) 206
ZrmI AGTACT 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.