Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007236

Physical Location & Seq

Genomic Coordinates Reverse (-)

5384740 .. 5387722

Gene Structure 2983 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG070000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTCCATACTTCTCCAACACTCAAACAATTATTTGCTTCATACAAATCACATCCAATCAAAAATGAGCGTCGCTGCTTCTATATCCTCCATCGCCACCGTTCGTTTCCCCAATTGCCGCCGTCACTGCTTTCGCGCCTCACCATCTCTCTCGCTTCGGATAATGGCCCAATTCTCATCCTCTGCCGCGTCTACTCCGCCTTCCCGCTCCGAAGCGGCCGCCGTGGAACCCAAGAAACCGCCCAAGCTGCCGTGGCTCATTGTCGGACTCGGAAACCCCGGCAAGAAGTACAGCAGCACCCGCCACAATGTGGGTTTCGAGATGGTGGATGCTATAGCCGAAGCTGAAGGGATAGCTTTGAGCAGTGTTTCTTTCAAAGCCCTTGTTGGGAAAGGATTTATTGGGGATGCCCCGGTTATATTTGCCAAACCGCAAACTTACATGAATAAAAGCGGTGAGTCTGTTGGAGCCATCGTCTCATATTACAAAATTCCATTGCAGCAAGTACTTGTGATCTTTGACGATCTGGATCTGCCATTCACAAAATTGCGGCTGTTGCCAAAGGGTGGACATGGAGGACAAAATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004045 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016787 GO:0016788 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0052689 GO:0140098 GO:0140101

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pept_tRNA_hydro

Protein Analysis

196

Amino Acids

21.09

Weight (kDa)

9.82

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pept_tRNA_hydro	PF01195	86 - 196	3.4e-43	Peptidyl-tRNA hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18440 AT1G18440
fragaria_vesca	FvH4_5g12500 FvH4_5g12500 FvH4_5g12500 FvH4_5g12500 FvH4_5g12500
malus_domestica	MD06G1212500.v1.1 MD14G1223800.v1.1
prunus_persica	Prupe.5G218900_v2.0.a1 Prupe.5G218900_v2.0.a1
pyrus_communis	pycom06g19010 pycom14g18500
rosa_chinensis	RchiOBHm_Chr7g0184851
rosa_laevigata	RLG00000004949
rosa_multiflora	Rmu_sc0018428.1_g000001 Rmu_sc0040795.1_g000001 Rmu_ssc0000289.1_g000013
rosa_roxburghii	Rroxscaffold_3G00269330
rosa_rugosa	Rorug06G0465400
rosa_samantha	Rh7AG077500 Rh7BG069800 Rh7CG070600 Rh7DG070000
rosa_wichuraiana	Rw7G005790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	310, 566
AccBSI	CCGCTC	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	191
AccII	CGCG	2 cut(s)	135, 188
AclWI	GGATC	1 cut(s)	537
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	489
AcuI	CTGAAG	1 cut(s)	366
AdeI	CACNNNGTG	1 cut(s)	310
AfaI	GTAC	2 cut(s)	290, 507
AfiI	CCNNNNNNNGG	3 cut(s)	310, 387, 566
AgsI	TTSAA	1 cut(s)	376
AluBI	AGCT	3 cut(s)	247, 344, 356
AluI	AGCT	3 cut(s)	247, 344, 356
Alw26I	GTCTC	1 cut(s)	481
AlwI	GGATC	1 cut(s)	537
AoxI	GGCC	2 cut(s)	165, 216
ApeKI	GCWGC	4 cut(s)	74, 247, 294, 499
ApoI	RAATTY	1 cut(s)	489
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	2 cut(s)	279, 413
AsuHPI	GGTGA	2 cut(s)	132, 467
BbvI	GCAGC	4 cut(s)	61, 234, 306, 511
BccI	CCATC	4 cut(s)	98, 151, 316, 479
BceAI	ACGGC	3 cut(s)	105, 206, 235
BcnI	CCSGG	2 cut(s)	279, 413
BcoDI	GTCTC	1 cut(s)	481
BfmI	CTRYAG	1 cut(s)	333
BisI	GCNGC	9 cut(s)	75, 118, 186, 216, 219, 248, 295, 500, 551
BlsI	GCNGC	9 cut(s)	76, 119, 187, 217, 220, 249, 296, 501, 552
BmcAI	AGTACT	1 cut(s)	507
Bme1390I	CCNGG	2 cut(s)	279, 413
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	2 cut(s)	228, 469
BmrFI	CCNGG	2 cut(s)	279, 413
BmsI	GCATC	2 cut(s)	319, 397
BpuMI	CCSGG	2 cut(s)	279, 413
BsaBI	GATNNNNATC	1 cut(s)	528
BsaJI	CCNNGG	4 cut(s)	222, 251, 277, 411
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	3 cut(s)	310, 387, 566
Bse3DI	GCAATG	1 cut(s)	494
Bse8I	GATNNNNATC	1 cut(s)	528
BseDI	CCNNGG	4 cut(s)	222, 251, 277, 411
BseGI	GGATG	4 cut(s)	51, 176, 334, 412
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	3 cut(s)	310, 387, 566
BseMI	GCAATG	1 cut(s)	494
BseX3I	CGGCCG	1 cut(s)	216
BseXI	GCAGC	4 cut(s)	61, 234, 306, 511
Bsh1236I	CGCG	2 cut(s)	135, 188
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	2 cut(s)	167, 218
BsiEI	CGRYCG	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	279, 413
BslI	CCNNNNNNNGG	3 cut(s)	310, 387, 566
BsmAI	GTCTC	1 cut(s)	481
BsmBI	CGTCTC	1 cut(s)	481
BsnI	GGCC	2 cut(s)	167, 218
Bsp143I	GATC	3 cut(s)	513, 523, 529
BspANI	GGCC	2 cut(s)	167, 218
BspFNI	CGCG	2 cut(s)	135, 188
BspLI	GGNNCC	2 cut(s)	228, 469
BspPI	GGATC	1 cut(s)	537
BsrBI	CCGCTC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	494
BssECI	CCNNGG	4 cut(s)	222, 251, 277, 411
BssMI	GATC	3 cut(s)	513, 523, 529
Bst4CI	ACNGT	1 cut(s)	100
BstDSI	CCRYGG	2 cut(s)	222, 251
BstF5I	GGATG	4 cut(s)	51, 176, 334, 412
BstFNI	CGCG	2 cut(s)	135, 188
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	3 cut(s)	516, 526, 532
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	3 cut(s)	513, 523, 529
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 247, 253, 300, 556
BstSCI	CCNGG	2 cut(s)	277, 411
BstSFI	CTRYAG	1 cut(s)	333
BstUI	CGCG	2 cut(s)	135, 188
BstV1I	GCAGC	4 cut(s)	61, 234, 306, 511
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BstZI	CGGCCG	1 cut(s)	216
BsuRI	GGCC	2 cut(s)	167, 218
BtgI	CCRYGG	2 cut(s)	222, 251
BtgZI	GCGATG	1 cut(s)	76
BtsCI	GGATG	4 cut(s)	51, 176, 334, 412
BtsI	GCAGTG	2 cut(s)	124, 370
BtsIMutI	CAGTG	2 cut(s)	124, 370
CciNI	GCGGCCGC	1 cut(s)	216
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	166
CseI	GACGC	2 cut(s)	58, 177
Csp6I	GTAC	2 cut(s)	289, 506
CviAII	CATG	2 cut(s)	442, 572
CviQI	GTAC	2 cut(s)	289, 506
DpnI	GATC	3 cut(s)	515, 525, 531
DpnII	GATC	3 cut(s)	513, 523, 529
DraIII	CACNNNGTG	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	216
EagI	CGGCCG	1 cut(s)	216
EciI	GGCGGA	1 cut(s)	186
EclXI	CGGCCG	1 cut(s)	216
Eco52I	CGGCCG	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	366
Esp3I	CGTCTC	1 cut(s)	481
FaeI	CATG	2 cut(s)	445, 575
FaiI	YATR	8 cut(s)	8, 42, 83, 335, 419, 443, 481, 573
FatI	CATG	2 cut(s)	441, 571
FauI	CCCGC	2 cut(s)	212, 308
FblI	GTMKAC	1 cut(s)	191
Fnu4HI	GCNGC	9 cut(s)	75, 118, 186, 216, 219, 248, 295, 500, 551
FokI	GGATG	4 cut(s)	38, 163, 341, 419
Fsp4HI	GCNGC	9 cut(s)	75, 118, 186, 216, 219, 248, 295, 500, 551
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	9 cut(s)	75, 118, 186, 216, 219, 248, 295, 500, 551
HaeIII	GGCC	2 cut(s)	167, 218
HapII	CCGG	2 cut(s)	279, 413
HgaI	GACGC	2 cut(s)	58, 177
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	445, 575
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HinfI	GANTC	2 cut(s)	267, 458
HpaII	CCGG	2 cut(s)	279, 413
HphI	GGTGA	2 cut(s)	132, 467
Hpy166II	GTNNAC	2 cut(s)	192, 569
Hpy188I	TCNGA	4 cut(s)	159, 211, 266, 272
Hpy188III	TCNNGA	2 cut(s)	319, 527
Hpy8I	GTNNAC	2 cut(s)	192, 569
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	210, 341
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	499
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 247, 253, 300, 556
Hsp92II	CATG	2 cut(s)	445, 575
HspAI	GCGC	1 cut(s)	135
Kzo9I	GATC	3 cut(s)	513, 523, 529
LmnI	GCTCC	2 cut(s)	212, 467
LpnPI	CCDG	3 cut(s)	292, 426, 512
Lsp1109I	GCAGC	4 cut(s)	61, 234, 306, 511
LweI	GCATC	2 cut(s)	319, 397
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	3 cut(s)	515, 525, 531
MbiI	CCGCTC	1 cut(s)	207
MboI	GATC	3 cut(s)	513, 523, 529
MfeI	CAATTG	1 cut(s)	112
MflI	RGATCY	1 cut(s)	529
MluCI	AATT	5 cut(s)	28, 112, 170, 489, 545
MlyI	GAGTC	2 cut(s)	261, 467
MmeI	TCCRAC	3 cut(s)	40, 244, 445
MnlI	CCTC	4 cut(s)	97, 148, 190, 569
MspI	CCGG	2 cut(s)	279, 413
MspR9I	CCNGG	2 cut(s)	279, 413
MunI	CAATTG	1 cut(s)	112
MvnI	CGCG	2 cut(s)	135, 188
MwoI	GCNNNNNNNGC	5 cut(s)	126, 247, 253, 300, 556
NciI	CCSGG	2 cut(s)	279, 413
NdeII	GATC	3 cut(s)	513, 523, 529
NlaIII	CATG	2 cut(s)	445, 575
NlaIV	GGNNCC	2 cut(s)	228, 469
NmuCI	GTSAC	1 cut(s)	122
NotI	GCGGCCGC	1 cut(s)	216
PflMI	CCANNNNNTGG	2 cut(s)	310, 566
PkrI	GCNGC	9 cut(s)	76, 119, 187, 217, 220, 249, 296, 501, 552
PleI	GAGTC	2 cut(s)	261, 466
PpsI	GAGTC	2 cut(s)	261, 466
PspN4I	GGNNCC	2 cut(s)	228, 469
PspPI	GGNCC	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	529
RsaI	GTAC	2 cut(s)	290, 507
RsaNI	GTAC	2 cut(s)	289, 506
SatI	GCNGC	9 cut(s)	75, 118, 186, 216, 219, 248, 295, 500, 551
Sau3AI	GATC	3 cut(s)	513, 523, 529
Sau96I	GGNCC	1 cut(s)	166
ScaI	AGTACT	1 cut(s)	507
SchI	GAGTC	2 cut(s)	261, 467
ScrFI	CCNGG	2 cut(s)	279, 413
SetI	ASST	3 cut(s)	249, 346, 358
SfaNI	GCATC	2 cut(s)	319, 397
SfcI	CTRYAG	1 cut(s)	333
Sse9I	AATT	5 cut(s)	28, 112, 170, 489, 545
StyD4I	CCNGG	2 cut(s)	277, 411
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	318
TasI	AATT	5 cut(s)	28, 112, 170, 489, 545
TatI	WGTACW	2 cut(s)	288, 505
TauI	GCSGC	5 cut(s)	120, 188, 218, 221, 553
TscAI	CASTG	2 cut(s)	131, 370
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	4 cut(s)	74, 247, 294, 499
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	29, 458
TspRI	CASTG	2 cut(s)	131, 370
Van91I	CCANNNNNTGG	2 cut(s)	310, 566
XapI	RAATTY	1 cut(s)	489
XmiI	GTMKAC	1 cut(s)	191
ZrmI	AGTACT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.