Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005635

Physical Location & Seq

Genomic Coordinates Reverse (-)

17387309 .. 17390748

Gene Structure 3440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G224400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGGATCAATTGGGATTTCTCTGCACTTACTACCTCACTCTCTGCTCCTCTGCTCTGCTGCTGGTTCCACTCAGAGCCCCAAAAGGGCAAGACCCATTTCAAGGATCAGCCCAAGAATGGCTCTGGCCACACCCATCACCTTTGGGTTCAATAATTTGTTGGAAACTTTCACAGTAAACGTGCAGAGAGCGGAGAATAGGCCTCTGAATGTGCCTTTGATAGCGCCTTTCACGATTGCCACTTCAAGGCTTGACAAGGTGGAGAATGTGGCTATCAGGGTTGAATTGAGTAACGGGTGTGTGGGGTGGGGTGAAACTCCAATCTTGCCTTTTGTCACTGCAGAGGATCAGCATACAGCCATGGTCAAGGCCAGGGAAGTTTGTGACTTCTTACTCCGCAGTCCGGCGAAGACCTTGGGTTCGCTTTTGGGAGAGATTGGTGGGCTTCTTCCTGGATATGAGTTTGCTTCTGTTAGGGCAGGAGTTGAAATGGCACTAATTGATGCAGTTTCGAGGAGTATTGGTGTCCCTTTATGGAGACTGTTTGGTGGAGCTTCAAATACCATAACCACTGATATAACAATTCCAATTGTTTCTCCTGGTGAAGCTGCTACATTGGCTTCAAAGTATCGTGAACAAGGATTTAGGACTTTAAAGCTTAAGGTGGGAAAGAATCTGATTTCAGACATAGAAGTCCTTCTAGCTATACGTGCAGTTCACGCAGATTGCGATTTTATCTTGGATGCTAATGAAGGATATACCTCCGAGGAAGCTATCCAAGTTCTTGATAAATTATATGAGGTGGGAGTTAGTCCTGTTCTCTTTGAACAACCAGTTCATAGAGATGATTGGGAAGGCCTTGGATATGTTAGTCGCATTGCGAGAGACAAATATGGAGTATCAGTTGCAGCTGATGAGAGCTGTCGAAGTTTAGTTGATGTTAAGAAAATAGTTGCAGAAAATCTAGCTGATGTCGTTAACATTAAACTTGCTAAAGTTGGGGTTGTTGGGGCCCTGGAAATCATTGAGGTGGCAAAGTCATCGGGATTAACTTTGATGATTGGTGGTATGGTTGAGACTAGACTGGCCATGGGCTTTGCTGGCCACCTTGCTGCTGGCCTTGGGTGCTTTAAGTTTGTTGACCTAGATACTCCCCTGCTGCTTTCGGAAGATCCAGTTCGGGAGGGTTATGAAGTTTCGGGTGCCGTTTATACGTTCAAAAATGCTAGAGGCAATGGTGGATTTCTTCATTGGAAAAATATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016854 GO:0016855 GO:0034641 GO:0043167 GO:0043169 GO:0043603 GO:0044237 GO:0046872 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MR_MLE_C MR_MLE_N

Protein Analysis

423

Amino Acids

45.33

Weight (kDa)

5.89

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18270
fragaria_vesca	FvH4_5g16670 FvH4_5g16670 FvH4_5g16670 FvH4_5g16670 FvH4_5g16670 FvH4_5g16670
malus_domestica	MD06G1220000.v1.1 MD14G1229600.v1.1
prunus_persica	Prupe.5G224400_v2.0.a1 Prupe.5G224400_v2.0.a1
pyrus_communis	pycom14g19100 pycom14g19110
rosa_chinensis	RchiOBHm_Chr7g0179451
rosa_laevigata	RLG00000005355
rosa_multiflora	Rmu_co8470985.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274010
rosa_rugosa	Rorug06G0424300 Rorug06G0424400 Rorug06G0424500 Rorug06G0424600
rosa_samantha	Rh2AG318700 Rh6AG144500 Rh7BG023500
rosa_wichuraiana	Rw4G009460 Rw4G033460 Rw5G048300 Rw7G001940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	692
AccB1I	GGYRCC	1 cut(s)	1202
AccBSI	CCGCTC	1 cut(s)	191
AciI	CCGC	2 cut(s)	191, 397
AclWI	GGATC	4 cut(s)	13, 113, 354, 1166
AcoI	YGGCCR	3 cut(s)	126, 1086, 1102
AfiI	CCNNNNNNNGG	5 cut(s)	85, 102, 118, 246, 403
AflII	CTTAAG	1 cut(s)	659
AgsI	TTSAA	9 cut(s)	102, 151, 246, 284, 488, 558, 624, 827, 1219
AjnI	CCWGG	4 cut(s)	371, 451, 598, 1014
AluBI	AGCT	8 cut(s)	554, 608, 658, 704, 773, 911, 921, 968
AluI	AGCT	8 cut(s)	554, 608, 658, 704, 773, 911, 921, 968
Alw26I	GTCTC	3 cut(s)	532, 879, 1070
AlwI	GGATC	4 cut(s)	13, 113, 354, 1166
AoxI	GGCC	8 cut(s)	126, 200, 369, 856, 1011, 1086, 1102, 1117
ApaI	GGGCCC	1 cut(s)	1015
ApeKI	GCWGC	5 cut(s)	59, 608, 908, 1112, 1159
ArsI	GACNNNNNNTTYG	2 cut(s)	403, 435
Asp700I	GAANNNNTTC	1 cut(s)	696
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	2 cut(s)	1011, 1012
AsuHPI	GGTGA	3 cut(s)	130, 323, 614
BaeGI	GKGCMC	1 cut(s)	1015
BalI	TGGCCA	3 cut(s)	128, 1088, 1104
BanI	GGYRCC	1 cut(s)	1202
BanII	GRGCYC	2 cut(s)	80, 1015
BbsI	GAAGAC	1 cut(s)	416
BbvI	GCAGC	5 cut(s)	46, 595, 920, 1099, 1146
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	1190
BcgI	CGANNNNNNTGC	2 cut(s)	1023, 1057
BciT130I	CCWGG	4 cut(s)	373, 453, 600, 1016
BcoDI	GTCTC	3 cut(s)	532, 879, 1070
BfaI	CTAG	5 cut(s)	701, 965, 1080, 1145, 1227
BfmI	CTRYAG	1 cut(s)	339
BfoI	RGCGCY	1 cut(s)	227
BfrI	CTTAAG	1 cut(s)	659
BisI	GCNGC	5 cut(s)	60, 609, 909, 1113, 1160
BlsI	GCNGC	5 cut(s)	61, 610, 910, 1114, 1161
Bme1390I	CCNGG	4 cut(s)	373, 453, 600, 1016
BmgT120I	GGNCC	2 cut(s)	1011, 1012
BmiI	GGNNCC	4 cut(s)	67, 1012, 1013, 1204
BmrFI	CCNGG	4 cut(s)	373, 453, 600, 1016
BmsI	GCATC	2 cut(s)	493, 733
BpiI	GAAGAC	1 cut(s)	416
BsaAI	YACGTR	1 cut(s)	710
BsaJI	CCNNGG	8 cut(s)	360, 372, 414, 765, 859, 1014, 1089, 1120
BsaXI	ACNNNNNCTCC	4 cut(s)	508, 538, 888, 918
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 102, 118, 246, 403
Bse1I	ACTGG	3 cut(s)	833, 1089, 1175
Bse3DI	GCAATG	2 cut(s)	876, 1240
BseBI	CCWGG	4 cut(s)	373, 453, 600, 1016
BseDI	CCNNGG	8 cut(s)	360, 372, 414, 765, 859, 1014, 1089, 1120
BseGI	GGATG	1 cut(s)	748
BseLI	CCNNNNNNNGG	5 cut(s)	85, 102, 118, 246, 403
BseMI	GCAATG	2 cut(s)	876, 1240
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	3 cut(s)	833, 1089, 1175
BseRI	GAGGAG	2 cut(s)	38, 529
BseSI	GKGCMC	1 cut(s)	1015
BseXI	GCAGC	5 cut(s)	46, 595, 920, 1099, 1146
BsgI	GTGCAG	3 cut(s)	8, 203, 732
BshFI	GGCC	8 cut(s)	128, 202, 371, 858, 1013, 1088, 1104, 1119
BshNI	GGYRCC	1 cut(s)	1202
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	5 cut(s)	85, 102, 118, 246, 403
BsmAI	GTCTC	3 cut(s)	532, 879, 1070
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	8 cut(s)	128, 202, 371, 858, 1013, 1088, 1104, 1119
Bsp120I	GGGCCC	1 cut(s)	1011
Bsp1286I	GDGCHC	2 cut(s)	80, 1015
Bsp143I	GATC	4 cut(s)	5, 105, 346, 1171
Bsp19I	CCATGG	2 cut(s)	360, 1089
BspACI	CCGC	2 cut(s)	191, 397
BspANI	GGCC	8 cut(s)	128, 202, 371, 858, 1013, 1088, 1104, 1119
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	4 cut(s)	67, 1012, 1013, 1204
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	4 cut(s)	13, 113, 354, 1166
BspT107I	GGYRCC	1 cut(s)	1202
BspTI	CTTAAG	1 cut(s)	659
BsrBI	CCGCTC	1 cut(s)	191
BsrDI	GCAATG	2 cut(s)	876, 1240
BsrI	ACTGG	3 cut(s)	833, 1089, 1175
BssECI	CCNNGG	8 cut(s)	360, 372, 414, 765, 859, 1014, 1089, 1120
BssMI	GATC	4 cut(s)	5, 105, 346, 1171
BssT1I	CCWWGG	5 cut(s)	360, 414, 859, 1089, 1120
Bst2UI	CCWGG	4 cut(s)	373, 453, 600, 1016
Bst4CI	ACNGT	2 cut(s)	175, 543
BstAFI	CTTAAG	1 cut(s)	659
BstBAI	YACGTR	1 cut(s)	710
BstC8I	GCNNGC	2 cut(s)	1102, 1117
BstDEI	CTNAG	1 cut(s)	72
BstDSI	CCRYGG	2 cut(s)	360, 1089
BstF5I	GGATG	1 cut(s)	748
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	4 cut(s)	8, 108, 349, 1174
BstMAI	GTCTC	3 cut(s)	532, 879, 1070
BstMBI	GATC	4 cut(s)	5, 105, 346, 1171
BstMWI	GCNNNNNNNGC	5 cut(s)	617, 710, 719, 1101, 1125
BstNI	CCWGG	4 cut(s)	373, 453, 600, 1016
BstSCI	CCNGG	4 cut(s)	371, 451, 598, 1014
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	1015
BstV1I	GCAGC	5 cut(s)	46, 595, 920, 1099, 1146
BstV2I	GAAGAC	1 cut(s)	416
BstX2I	RGATCY	1 cut(s)	1171
BstYI	RGATCY	1 cut(s)	1171
BsuRI	GGCC	8 cut(s)	128, 202, 371, 858, 1013, 1088, 1104, 1119
BtgI	CCRYGG	2 cut(s)	360, 1089
BtsCI	GGATG	1 cut(s)	748
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	2 cut(s)	336, 570
Cac8I	GCNNGC	2 cut(s)	1102, 1117
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	1011, 1012
CviAII	CATG	2 cut(s)	361, 1090
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	4 cut(s)	7, 107, 348, 1173
DpnII	GATC	4 cut(s)	5, 105, 346, 1171
DraI	TTTAAA	1 cut(s)	654
DrdI	GACNNNNNNGTC	1 cut(s)	692
DseDI	GACNNNNNNGTC	1 cut(s)	692
EaeI	YGGCCR	3 cut(s)	126, 1086, 1102
Eco130I	CCWWGG	5 cut(s)	360, 414, 859, 1089, 1120
Eco147I	AGGCCT	2 cut(s)	202, 858
Eco24I	GRGCYC	2 cut(s)	80, 1015
EcoO109I	RGGNCCY	2 cut(s)	1011, 1012
EcoRII	CCWGG	4 cut(s)	371, 451, 598, 1014
EcoT14I	CCWWGG	5 cut(s)	360, 414, 859, 1089, 1120
EcoT38I	GRGCYC	2 cut(s)	80, 1015
ErhI	CCWWGG	5 cut(s)	360, 414, 859, 1089, 1120
FaeI	CATG	2 cut(s)	364, 1093
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	2 cut(s)	360, 1089
Fnu4HI	GCNGC	5 cut(s)	60, 609, 909, 1113, 1160
FokI	GGATG	1 cut(s)	755
FriOI	GRGCYC	2 cut(s)	80, 1015
Fsp4HI	GCNGC	5 cut(s)	60, 609, 909, 1113, 1160
FspBI	CTAG	5 cut(s)	701, 965, 1080, 1145, 1227
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	5 cut(s)	60, 609, 909, 1113, 1160
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	8 cut(s)	128, 202, 371, 858, 1013, 1088, 1104, 1119
HapII	CCGG	1 cut(s)	404
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	2 cut(s)	364, 1093
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	2 cut(s)	979, 1141
HindII	GTYRAC	2 cut(s)	979, 1141
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	1 cut(s)	673
HpaI	GTTAAC	1 cut(s)	979
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	3 cut(s)	130, 323, 614
Hpy166II	GTNNAC	5 cut(s)	178, 635, 718, 979, 1141
Hpy188I	TCNGA	6 cut(s)	75, 207, 678, 685, 766, 1168
Hpy188III	TCNNGA	5 cut(s)	232, 632, 785, 1044, 1181
Hpy8I	GTNNAC	5 cut(s)	178, 635, 718, 979, 1141
HpyAV	CCTTC	3 cut(s)	707, 746, 848
HpyCH4III	ACNGT	2 cut(s)	175, 543
HpyCH4IV	ACGT	3 cut(s)	180, 709, 1214
HpyCH4V	TGCA	7 cut(s)	25, 184, 341, 506, 713, 908, 956
HpyF10VI	GCNNNNNNNGC	5 cut(s)	617, 710, 719, 1101, 1125
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	3 cut(s)	180, 709, 1214
Hsp92II	CATG	2 cut(s)	364, 1093
HspAI	GCGC	1 cut(s)	224
KspAI	GTTAAC	1 cut(s)	979
Kzo9I	GATC	4 cut(s)	5, 105, 346, 1171
LmnI	GCTCC	2 cut(s)	51, 551
Lsp1109I	GCAGC	5 cut(s)	46, 595, 920, 1099, 1146
LweI	GCATC	2 cut(s)	493, 733
MaeI	CTAG	5 cut(s)	701, 965, 1080, 1145, 1227
MaeII	ACGT	3 cut(s)	180, 709, 1214
MaeIII	GTNAC	3 cut(s)	290, 334, 383
MalI	GATC	4 cut(s)	7, 107, 348, 1173
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	4 cut(s)	5, 105, 346, 1171
MboII	GAAGA	4 cut(s)	421, 440, 1181, 1238
MfeI	CAATTG	2 cut(s)	9, 588
MflI	RGATCY	1 cut(s)	1171
MhlI	GDGCHC	2 cut(s)	80, 1015
MlsI	TGGCCA	3 cut(s)	128, 1088, 1104
MluCI	AATT	7 cut(s)	9, 154, 284, 498, 582, 588, 791
MluNI	TGGCCA	3 cut(s)	128, 1088, 1104
MmeI	TCCRAC	1 cut(s)	141
Mox20I	TGGCCA	3 cut(s)	128, 1088, 1104
MroXI	GAANNNNTTC	1 cut(s)	696
MscI	TGGCCA	3 cut(s)	128, 1088, 1104
MseI	TTAA	7 cut(s)	653, 660, 942, 978, 984, 1049, 1131
MslI	CAYNNNNRTG	2 cut(s)	843, 1028
Msp20I	TGGCCA	3 cut(s)	128, 1088, 1104
MspA1I	CMGCKG	1 cut(s)	911
MspCI	CTTAAG	1 cut(s)	659
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	4 cut(s)	373, 453, 600, 1016
MunI	CAATTG	2 cut(s)	9, 588
MvaI	CCWGG	4 cut(s)	373, 453, 600, 1016
MwoI	GCNNNNNNNGC	5 cut(s)	617, 710, 719, 1101, 1125
NcoI	CCATGG	2 cut(s)	360, 1089
NdeII	GATC	4 cut(s)	5, 105, 346, 1171
NlaIII	CATG	2 cut(s)	364, 1093
NlaIV	GGNNCC	4 cut(s)	67, 1012, 1013, 1204
NmuCI	GTSAC	2 cut(s)	334, 383
PceI	AGGCCT	2 cut(s)	202, 858
PcsI	WCGNNNNNNNCGW	1 cut(s)	726
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	1 cut(s)	673
PfoI	TCCNGGA	1 cut(s)	451
PkrI	GCNGC	5 cut(s)	61, 610, 910, 1114, 1161
Ppu21I	YACGTR	1 cut(s)	710
Psp6I	CCWGG	4 cut(s)	371, 451, 598, 1014
PspGI	CCWGG	4 cut(s)	371, 451, 598, 1014
PspN4I	GGNNCC	4 cut(s)	67, 1012, 1013, 1204
PspOMI	GGGCCC	1 cut(s)	1011
PspPI	GGNCC	2 cut(s)	1011, 1012
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	1171
PvuII	CAGCTG	1 cut(s)	911
RseI	CAYNNNNRTG	2 cut(s)	843, 1028
SaqAI	TTAA	7 cut(s)	653, 660, 942, 978, 984, 1049, 1131
SatI	GCNGC	5 cut(s)	60, 609, 909, 1113, 1160
Sau3AI	GATC	4 cut(s)	5, 105, 346, 1171
Sau96I	GGNCC	2 cut(s)	1011, 1012
ScrFI	CCNGG	4 cut(s)	373, 453, 600, 1016
SduI	GDGCHC	2 cut(s)	80, 1015
SfaNI	GCATC	2 cut(s)	493, 733
SfcI	CTRYAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	2 cut(s)	843, 1028
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
Sse9I	AATT	7 cut(s)	9, 154, 284, 498, 582, 588, 791
SseBI	AGGCCT	2 cut(s)	202, 858
SsiI	CCGC	2 cut(s)	191, 397
SspI	AATATT	1 cut(s)	1261
SspMI	CTAG	5 cut(s)	701, 965, 1080, 1145, 1227
StuI	AGGCCT	2 cut(s)	202, 858
StyD4I	CCNGG	4 cut(s)	371, 451, 598, 1014
StyI	CCWWGG	5 cut(s)	360, 414, 859, 1089, 1120
TaaI	ACNGT	2 cut(s)	175, 543
TaiI	ACGT	3 cut(s)	183, 712, 1217
TaqI	TCGA	2 cut(s)	512, 925
TasI	AATT	7 cut(s)	9, 154, 284, 498, 582, 588, 791
TfiI	GAWTC	1 cut(s)	673
Tru1I	TTAA	7 cut(s)	653, 660, 942, 978, 984, 1049, 1131
Tru9I	TTAA	7 cut(s)	653, 660, 942, 978, 984, 1049, 1131
TscAI	CASTG	2 cut(s)	343, 577
TseFI	GTSAC	2 cut(s)	334, 383
TseI	GCWGC	5 cut(s)	59, 608, 908, 1112, 1159
Tsp45I	GTSAC	2 cut(s)	334, 383
TspDTI	ATGAA	4 cut(s)	765, 827, 1206, 1238
TspRI	CASTG	2 cut(s)	343, 577
Vha464I	CTTAAG	1 cut(s)	659
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1112
XmnI	GAANNNNTTC	1 cut(s)	696
XspI	CTAG	5 cut(s)	701, 965, 1080, 1145, 1227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.