Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005635

Physical Location & Seq

Genomic Coordinates Forward (+)

45404596 .. 45444425

Gene Structure 39830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG318700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGTCTTAGATCACCAAACTCTACACCTTGCCAATACCAACAACGACTACAGCTAACCACCGCTGCAAAGGGCAACTTTTATATTCTACAAGTGTTTTTTCTTGGGGATTCTCTAACCCATTGGATTTTCTTAGTTTGTAGGAAGATGACATTTTGGTTTCAAAGAATCACTGGAGTTAGCTTGTGCAGAGGTATTGGAAGCATGTGGTTGAAAACAGACTTAGAAATTTCTGCAGCTGAAGCTGCCAAACTGGCTTCAAAGTATTGCAAAGAAGGATTTAAAACTTTAAAGCTTAAGGTGGGAAAGAATCTAAATTCAGACATAGAAGTCCTTCAAGCTATAAGAGCAGTCCACCCTGATTGCTCTTTTATCTTGGACGCTAACGAAGGATATAGCTCCAATGAAGCTATCCAAGTTCTTGAGAAATTATATGAGGTGGGAGTGAGTCCAGTTCTCTTTGAACAACCAGTTCATAGAGATGATTGGGAAGGCCTTGGATATGTTACTCGTATTGCTAGAGAAAGATATGGAGTATCAGTTGTAGCTGATGAGAGCTGTCGAAGTATAGTGGATGTTAAGAAAATAGCAGAAGAAAATCTTGCTAATGTCATTAACATTAAACTTACTAAAGTTGGGGTTGTTGGGGCCCTTGAAATCATTGAGGTTGCAAGAGCATCGGGATTGGATTTGATGATTGGTGGTATGGTTGAGACTAGACTCGCCATGGGCTTTTCTGGCCACCTTGCTGCTGGCCTTGGGTGTTTTAAAGGGGAAATTTTGACTTGCTCTTTGTACACAGATCACAACCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016854 GO:0016855 GO:0034641 GO:0043167 GO:0043169 GO:0043603 GO:0044237 GO:0046872 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MR_MLE_C MR_MLE_N

Protein Analysis

271

Amino Acids

29.95

Weight (kDa)

6.95

Isoelectric Point (pI)

28.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MR_MLE_C	PF13378	82 - 255	8.4e-32	Enolase C-terminal domain-like
MAAL_C	PF07476	151 - 241	1.1e-06	Methylaspartate ammonia-lyase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18270
fragaria_vesca	FvH4_5g16670 FvH4_5g16670 FvH4_5g16670 FvH4_5g16670 FvH4_5g16670 FvH4_5g16670
malus_domestica	MD06G1220000.v1.1 MD14G1229600.v1.1
prunus_persica	Prupe.5G224400_v2.0.a1 Prupe.5G224400_v2.0.a1
pyrus_communis	pycom14g19100 pycom14g19110
rosa_chinensis	RchiOBHm_Chr7g0179451
rosa_laevigata	RLG00000005355
rosa_multiflora	Rmu_co8470985.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274010
rosa_rugosa	Rorug06G0424300 Rorug06G0424400 Rorug06G0424500 Rorug06G0424600
rosa_samantha	Rh2AG318700 Rh6AG144500 Rh7BG023500
rosa_wichuraiana	Rw4G009460 Rw4G033460 Rw5G048300 Rw7G001940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
AciI	CCGC	1 cut(s)	63
AcoI	YGGCCR	1 cut(s)	739
AcsI	RAATTY	3 cut(s)	228, 316, 777
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	1 cut(s)	797
AflII	CTTAAG	1 cut(s)	296
AgsI	TTSAA	6 cut(s)	164, 214, 261, 338, 464, 656
Alw26I	GTCTC	1 cut(s)	707
AoxI	GGCC	4 cut(s)	493, 648, 739, 754
ApaI	GGGCCC	1 cut(s)	652
ApeKI	GCWGC	4 cut(s)	65, 236, 245, 749
ApoI	RAATTY	3 cut(s)	228, 316, 777
ArsI	GACNNNNNNTTYG	2 cut(s)	775, 807
Asp700I	GAANNNNTTC	1 cut(s)	333
AspS9I	GGNCC	2 cut(s)	648, 649
AsuHPI	GGTGA	1 cut(s)	6
BaeGI	GKGCMC	1 cut(s)	652
BalI	TGGCCA	1 cut(s)	741
BanII	GRGCYC	1 cut(s)	652
BbvI	GCAGC	4 cut(s)	52, 232, 248, 736
BcgI	CGANNNNNNTGC	2 cut(s)	660, 694
BcoDI	GTCTC	1 cut(s)	707
BfaI	CTAG	2 cut(s)	519, 717
BfmI	CTRYAG	2 cut(s)	50, 234
BfrI	CTTAAG	1 cut(s)	296
BglI	GCCNNNNNGGC	1 cut(s)	254
BisI	GCNGC	4 cut(s)	66, 237, 246, 750
BlsI	GCNGC	4 cut(s)	67, 238, 247, 751
BmgT120I	GGNCC	2 cut(s)	648, 649
BmiI	GGNNCC	2 cut(s)	649, 650
BmsI	GCATC	1 cut(s)	686
BpmI	CTGGAG	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	443
BsaJI	CCNNGG	3 cut(s)	496, 726, 757
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bse1I	ACTGG	4 cut(s)	178, 258, 452, 470
BseDI	CCNNGG	3 cut(s)	496, 726, 757
BseGI	GGATG	1 cut(s)	580
BseNI	ACTGG	4 cut(s)	178, 258, 452, 470
BseSI	GKGCMC	1 cut(s)	652
BseXI	GCAGC	4 cut(s)	52, 232, 248, 736
BsgI	GTGCAG	1 cut(s)	208
BshFI	GGCC	4 cut(s)	495, 650, 741, 756
BsmAI	GTCTC	1 cut(s)	707
BsnI	GGCC	4 cut(s)	495, 650, 741, 756
Bsp120I	GGGCCC	1 cut(s)	648
Bsp1286I	GDGCHC	1 cut(s)	652
Bsp1407I	TGTACA	1 cut(s)	795
Bsp143I	GATC	2 cut(s)	11, 802
Bsp19I	CCATGG	1 cut(s)	726
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	4 cut(s)	495, 650, 741, 756
BspLI	GGNNCC	2 cut(s)	649, 650
BspMAI	CTGCAG	1 cut(s)	238
BspTI	CTTAAG	1 cut(s)	296
BsrGI	TGTACA	1 cut(s)	795
BsrI	ACTGG	4 cut(s)	178, 258, 452, 470
BssECI	CCNNGG	3 cut(s)	496, 726, 757
BssMI	GATC	2 cut(s)	11, 802
BssT1I	CCWWGG	3 cut(s)	496, 726, 757
BstAFI	CTTAAG	1 cut(s)	296
BstAUI	TGTACA	1 cut(s)	795
BstC8I	GCNNGC	1 cut(s)	754
BstDEI	CTNAG	3 cut(s)	8, 133, 223
BstDSI	CCRYGG	1 cut(s)	726
BstF5I	GGATG	1 cut(s)	580
BstKTI	GATC	2 cut(s)	14, 805
BstMAI	GTCTC	1 cut(s)	707
BstMBI	GATC	2 cut(s)	11, 802
BstMWI	GCNNNNNNNGC	5 cut(s)	242, 245, 254, 347, 738
BstNSI	RCATGY	1 cut(s)	208
BstSFI	CTRYAG	2 cut(s)	50, 234
BstSLI	GKGCMC	1 cut(s)	652
BstV1I	GCAGC	4 cut(s)	52, 232, 248, 736
BsuRI	GGCC	4 cut(s)	495, 650, 741, 756
BtgI	CCRYGG	1 cut(s)	726
BtsCI	GGATG	1 cut(s)	580
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	754
Cfr13I	GGNCC	2 cut(s)	648, 649
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	1 cut(s)	796
CspCI	CAANNNNNGTGG	2 cut(s)	344, 379
CviAII	CATG	2 cut(s)	205, 727
CviQI	GTAC	1 cut(s)	796
DdeI	CTNAG	3 cut(s)	8, 133, 223
DpnI	GATC	2 cut(s)	13, 804
DpnII	GATC	2 cut(s)	11, 802
DraI	TTTAAA	3 cut(s)	283, 291, 769
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	739
Eco130I	CCWWGG	3 cut(s)	496, 726, 757
Eco147I	AGGCCT	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	652
Eco57I	CTGAAG	1 cut(s)	261
EcoO109I	RGGNCCY	2 cut(s)	648, 649
EcoT14I	CCWWGG	3 cut(s)	496, 726, 757
EcoT38I	GRGCYC	1 cut(s)	652
ErhI	CCWWGG	3 cut(s)	496, 726, 757
FaeI	CATG	2 cut(s)	208, 730
FalI	AAGNNNNNCTT	4 cut(s)	62, 94, 585, 617
FatI	CATG	2 cut(s)	204, 726
Fnu4HI	GCNGC	4 cut(s)	66, 237, 246, 750
FokI	GGATG	1 cut(s)	587
FriOI	GRGCYC	1 cut(s)	652
Fsp4HI	GCNGC	4 cut(s)	66, 237, 246, 750
FspBI	CTAG	2 cut(s)	519, 717
GluI	GCNGC	4 cut(s)	66, 237, 246, 750
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	4 cut(s)	495, 650, 741, 756
HgaI	GACGC	1 cut(s)	389
Hin1II	CATG	2 cut(s)	208, 730
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	5 cut(s)	110, 168, 310, 448, 720
HphI	GGTGA	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	355, 798
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	2 cut(s)	422, 681
Hpy8I	GTNNAC	2 cut(s)	355, 798
HpyAV	CCTTC	4 cut(s)	269, 344, 383, 485
HpyCH4V	TGCA	5 cut(s)	68, 189, 236, 270, 671
HpyF10VI	GCNNNNNNNGC	5 cut(s)	242, 245, 254, 347, 738
HpyF3I	CTNAG	3 cut(s)	8, 133, 223
Hsp92II	CATG	2 cut(s)	208, 730
Kzo9I	GATC	2 cut(s)	11, 802
LmnI	GCTCC	1 cut(s)	404
LpnPI	CCDG	7 cut(s)	159, 239, 372, 465, 483, 723, 738
Lsp1109I	GCAGC	4 cut(s)	52, 232, 248, 736
LweI	GCATC	1 cut(s)	686
MaeI	CTAG	2 cut(s)	519, 717
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	2 cut(s)	13, 804
MboI	GATC	2 cut(s)	11, 802
MboII	GAAGA	2 cut(s)	157, 605
MhlI	GDGCHC	1 cut(s)	652
MlsI	TGGCCA	1 cut(s)	741
MluCI	AATT	4 cut(s)	228, 316, 428, 777
MluNI	TGGCCA	1 cut(s)	741
MlyI	GAGTC	2 cut(s)	457, 714
MnlI	CCTC	3 cut(s)	185, 430, 658
Mox20I	TGGCCA	1 cut(s)	741
MroXI	GAANNNNTTC	1 cut(s)	333
MscI	TGGCCA	1 cut(s)	741
MseI	TTAA	7 cut(s)	282, 290, 297, 579, 615, 621, 768
MslI	CAYNNNNRTG	1 cut(s)	480
Msp20I	TGGCCA	1 cut(s)	741
MspA1I	CMGCKG	2 cut(s)	65, 239
MspCI	CTTAAG	1 cut(s)	296
MwoI	GCNNNNNNNGC	5 cut(s)	242, 245, 254, 347, 738
NcoI	CCATGG	1 cut(s)	726
NdeII	GATC	2 cut(s)	11, 802
NlaIII	CATG	2 cut(s)	208, 730
NlaIV	GGNNCC	2 cut(s)	649, 650
NspI	RCATGY	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	495
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	3 cut(s)	110, 168, 310
PkrI	GCNGC	4 cut(s)	67, 238, 247, 751
PleI	GAGTC	2 cut(s)	456, 714
PpsI	GAGTC	2 cut(s)	456, 714
PspN4I	GGNNCC	2 cut(s)	649, 650
PspOMI	GGGCCC	1 cut(s)	648
PspPI	GGNCC	2 cut(s)	648, 649
PstI	CTGCAG	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	797
RsaNI	GTAC	1 cut(s)	796
RseI	CAYNNNNRTG	1 cut(s)	480
SaqAI	TTAA	7 cut(s)	282, 290, 297, 579, 615, 621, 768
SatI	GCNGC	4 cut(s)	66, 237, 246, 750
Sau3AI	GATC	2 cut(s)	11, 802
Sau96I	GGNCC	2 cut(s)	648, 649
SchI	GAGTC	2 cut(s)	457, 714
SduI	GDGCHC	1 cut(s)	652
SfaNI	GCATC	1 cut(s)	686
SfcI	CTRYAG	2 cut(s)	50, 234
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	2 cut(s)	296, 422
SmoI	CTYRAG	2 cut(s)	296, 422
Sse9I	AATT	4 cut(s)	228, 316, 428, 777
SseBI	AGGCCT	1 cut(s)	495
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	2 cut(s)	519, 717
StuI	AGGCCT	1 cut(s)	495
StyI	CCWWGG	3 cut(s)	496, 726, 757
TaqI	TCGA	1 cut(s)	562
TasI	AATT	4 cut(s)	228, 316, 428, 777
TatI	WGTACW	1 cut(s)	795
TfiI	GAWTC	3 cut(s)	110, 168, 310
Tru1I	TTAA	7 cut(s)	282, 290, 297, 579, 615, 621, 768
Tru9I	TTAA	7 cut(s)	282, 290, 297, 579, 615, 621, 768
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	4 cut(s)	65, 236, 245, 749
TspDTI	ATGAA	2 cut(s)	420, 464
TspRI	CASTG	1 cut(s)	178
Vha464I	CTTAAG	1 cut(s)	296
XapI	RAATTY	3 cut(s)	228, 316, 777
XceI	RCATGY	1 cut(s)	208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	749
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	2 cut(s)	519, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.