Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005635

Physical Location & Seq

Genomic Coordinates Forward (+)

1644681 .. 1648234

Gene Structure 3554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG023500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGACCTCAATTGGGTTCTCTCTCAACTCCCTGATCCTTTGTTCTACTGTCAGTTCAACTCAGAGCTCAAAAAGACTGAGACCCAGTTCAAGAATGGCTCTGGCCACCCCCACCACATTTGGGTTCAGTAATTTACTCGAGACTTTCACAGTCAACGTTCAGAGAGCAGAGAACAGGCCTCTGAATGTGCCTCTGATTGCTCCTTTTACGATTGCGACTTCGAGGCTTGAACGTGTTGAGAATGTTGCGATCAGAGTTGAGTTGAGAAATGGGTGTGTGGGGTGGGGTGAAGCTCCAATCTTGCCTCATGTGACTGCAGAGGATCAGCACACCGCTATGGTCAAGGCCAAGGAGGCTTGTGAGTTCTTGCTCAGGAATAATGGGATGACTTTGAGTTCGGTTTTGGGAGAGATTGGTGTGCTTCTCCCTGGATATGAGTTTGCTTCTGTTAGGGCAGGAGTGGAGATGGCTCTAATTGACGCAGTTGCTACAAGTATTGGTGTCCCATTGTGGAGACTGTTTGGTGGAGCTTCAAATACCATAACCACTGATATAACGATTCCGATAGTTTCTGCAGCTGAAGCTGCCAAACTGGCTTCAAAGTATTGCAAAGAAGGATTTAAAACTTTAAAGCTTAAGGTGGGAAAGAATCTAAATTCAGACATAGAAGTCCTTCAAGCTATAAGAGCAGTCCACCCTGATTGCTCTTTTATCTTGGATGCTAACGAAGGATATAGCTCCAATGAAGCTATCCAAGTTCTTGAGAAATTATATGAGGTGGGAGTGAGTCCAGTTCTCTTTGAACAACCAGTTCATAGAGATGATTGGGAAGGCCTTGGATATGTTACTCGTATTGCTAGAGAAAGATATGGAGTATCAGTTGCAGCTGATGAGAGCTGTCGAAGTATAGTAGATGTTAAGAAAATAGCAGAAGAAAATCTTGCTAATGTCATTAACATTAAACTTACTAAAGTTGGGGTTGTTGGGGCCCTTGAAATCATTGAGGTTGCAAGAGCATCGGGATTGGATTTGATGATTGGTGGTATGGTTGAGACTAGACTTGCCATGGGCTTTTCTGGCCACCTTGCTGCTGGCCTTGGGTGTTTTAAGTTTATTGATCTAGATACACCCCTATTGCTGTCAGAAGATCCAGTTCTGGAGGGTTATGAAGTTTCTGGTGCTGTTTATAAGTTCAACAACGCTAGAGGCCATGGTGGATTTCTCCACTGGGACAACCTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0005488 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016854 GO:0016855 GO:0034641 GO:0043167 GO:0043169 GO:0043603 GO:0044237 GO:0046872 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MR_MLE_C MR_MLE_N

Protein Analysis

414

Amino Acids

44.67

Weight (kDa)

5.53

Isoelectric Point (pI)

28.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MR_MLE_N	PF02746	64 - 175	4.2e-07	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
MR_MLE_C	PF13378	195 - 405	7.9e-34	Enolase C-terminal domain-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18270
fragaria_vesca	FvH4_5g16670 FvH4_5g16670 FvH4_5g16670 FvH4_5g16670 FvH4_5g16670 FvH4_5g16670
malus_domestica	MD06G1220000.v1.1 MD14G1229600.v1.1
prunus_persica	Prupe.5G224400_v2.0.a1 Prupe.5G224400_v2.0.a1
pyrus_communis	pycom14g19100 pycom14g19110
rosa_chinensis	RchiOBHm_Chr7g0179451
rosa_laevigata	RLG00000005355
rosa_multiflora	Rmu_co8470985.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274010
rosa_rugosa	Rorug06G0424300 Rorug06G0424400 Rorug06G0424500 Rorug06G0424600
rosa_samantha	Rh2AG318700 Rh6AG144500 Rh7BG023500
rosa_wichuraiana	Rw4G009460 Rw4G033460 Rw5G048300 Rw7G001940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1188
AasI	GACNNNNNNGTC	1 cut(s)	668
AciI	CCGC	1 cut(s)	333
AclI	AACGTT	1 cut(s)	156
AclWI	GGATC	3 cut(s)	28, 330, 1142
AcoI	YGGCCR	2 cut(s)	102, 1078
AcsI	RAATTY	1 cut(s)	655
AcuI	CTGAAG	1 cut(s)	600
AfiI	CCNNNNNNNGG	2 cut(s)	12, 120
AflII	CTTAAG	1 cut(s)	635
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	9 cut(s)	57, 90, 230, 534, 600, 677, 803, 995, 1195
AjnI	CCWGG	1 cut(s)	427
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	4 cut(s)	73, 134, 508, 1046
AlwI	GGATC	3 cut(s)	28, 330, 1142
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	8 cut(s)	102, 176, 345, 832, 987, 1078, 1093, 1207
ApaI	GGGCCC	1 cut(s)	991
ApeKI	GCWGC	4 cut(s)	575, 584, 884, 1088
ApoI	RAATTY	1 cut(s)	655
ArsI	GACNNNNNNTTYG	2 cut(s)	379, 411
Asp700I	GAANNNNTTC	1 cut(s)	672
AspS9I	GGNCC	2 cut(s)	987, 988
AsuHPI	GGTGA	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	991
BalI	TGGCCA	2 cut(s)	104, 1080
BanII	GRGCYC	2 cut(s)	68, 991
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	4 cut(s)	571, 587, 896, 1075
BccI	CCATC	1 cut(s)	460
BcgI	CGANNNNNNTGC	2 cut(s)	999, 1033
BciT130I	CCWGG	1 cut(s)	429
BcoDI	GTCTC	4 cut(s)	73, 134, 508, 1046
BfaI	CTAG	4 cut(s)	858, 1056, 1121, 1203
BfmI	CTRYAG	2 cut(s)	315, 573
BfrI	CTTAAG	1 cut(s)	635
BglI	GCCNNNNNGGC	2 cut(s)	353, 593
BisI	GCNGC	4 cut(s)	576, 585, 885, 1089
BlsI	GCNGC	4 cut(s)	577, 586, 886, 1090
Bme1390I	CCNGG	1 cut(s)	429
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	987, 988
BmiI	GGNNCC	2 cut(s)	988, 989
BmrFI	CCNGG	1 cut(s)	429
BmrI	ACTGGG	2 cut(s)	78, 1237
BmsI	GCATC	2 cut(s)	709, 1025
BmuI	ACTGGG	2 cut(s)	78, 1237
BpmI	CTGGAG	1 cut(s)	1178
Bpu10I	CCTNAGC	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	782
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	6 cut(s)	348, 427, 835, 1065, 1096, 1210
BsaXI	ACNNNNNCTCC	2 cut(s)	864, 894
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 120
Bse1I	ACTGG	6 cut(s)	84, 597, 791, 809, 1151, 1232
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	6 cut(s)	348, 427, 835, 1065, 1096, 1210
BseGI	GGATG	2 cut(s)	390, 724
BseLI	CCNNNNNNNGG	2 cut(s)	12, 120
BseMII	CTCAG	3 cut(s)	68, 74, 385
BseNI	ACTGG	6 cut(s)	84, 597, 791, 809, 1151, 1232
BseSI	GKGCMC	1 cut(s)	991
BseXI	GCAGC	4 cut(s)	571, 587, 896, 1075
BshFI	GGCC	8 cut(s)	104, 178, 347, 834, 989, 1080, 1095, 1209
BsiHKAI	GWGCWC	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	2 cut(s)	12, 120
BsmAI	GTCTC	4 cut(s)	73, 134, 508, 1046
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	8 cut(s)	104, 178, 347, 834, 989, 1080, 1095, 1209
Bso31I	GGTCTC	1 cut(s)	73
BsoBI	CYCGRG	1 cut(s)	137
Bsp120I	GGGCCC	1 cut(s)	987
Bsp1286I	GDGCHC	2 cut(s)	68, 991
Bsp143I	GATC	5 cut(s)	33, 249, 322, 1117, 1147
Bsp19I	CCATGG	2 cut(s)	1065, 1210
BspACI	CCGC	1 cut(s)	333
BspANI	GGCC	8 cut(s)	104, 178, 347, 834, 989, 1080, 1095, 1209
BspCNI	CTCAG	3 cut(s)	69, 73, 384
BspLI	GGNNCC	2 cut(s)	988, 989
BspMAI	CTGCAG	2 cut(s)	319, 577
BspPI	GGATC	3 cut(s)	28, 330, 1142
BspTI	CTTAAG	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	73
BsrI	ACTGG	6 cut(s)	84, 597, 791, 809, 1151, 1232
BssECI	CCNNGG	6 cut(s)	348, 427, 835, 1065, 1096, 1210
BssMI	GATC	5 cut(s)	33, 249, 322, 1117, 1147
BssT1I	CCWWGG	5 cut(s)	348, 835, 1065, 1096, 1210
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	3 cut(s)	49, 151, 519
BstAFI	CTTAAG	1 cut(s)	635
BstC8I	GCNNGC	1 cut(s)	1093
BstDEI	CTNAG	3 cut(s)	60, 77, 371
BstDSI	CCRYGG	2 cut(s)	1065, 1210
BstF5I	GGATG	2 cut(s)	390, 724
BstKTI	GATC	5 cut(s)	36, 252, 325, 1120, 1150
BstMAI	GTCTC	4 cut(s)	73, 134, 508, 1046
BstMBI	GATC	5 cut(s)	33, 249, 322, 1117, 1147
BstMWI	GCNNNNNNNGC	6 cut(s)	353, 581, 584, 593, 686, 1077
BstNI	CCWGG	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	427
BstSFI	CTRYAG	2 cut(s)	315, 573
BstSLI	GKGCMC	1 cut(s)	991
BstV1I	GCAGC	4 cut(s)	571, 587, 896, 1075
BstX2I	RGATCY	1 cut(s)	1147
BstYI	RGATCY	1 cut(s)	1147
BsuRI	GGCC	8 cut(s)	104, 178, 347, 834, 989, 1080, 1095, 1209
BtgI	CCRYGG	2 cut(s)	1065, 1210
BtsCI	GGATG	2 cut(s)	390, 724
BtsIMutI	CAGTG	2 cut(s)	546, 1225
Cac8I	GCNNGC	1 cut(s)	1093
Cfr13I	GGNCC	2 cut(s)	987, 988
CseI	GACGC	1 cut(s)	488
CspCI	CAANNNNNGTGG	4 cut(s)	100, 135, 683, 718
CviAII	CATG	3 cut(s)	308, 1066, 1211
DdeI	CTNAG	3 cut(s)	60, 77, 371
DpnI	GATC	5 cut(s)	35, 251, 324, 1119, 1149
DpnII	GATC	5 cut(s)	33, 249, 322, 1117, 1147
DraI	TTTAAA	2 cut(s)	622, 630
DrdI	GACNNNNNNGTC	1 cut(s)	668
DseDI	GACNNNNNNGTC	1 cut(s)	668
EaeI	YGGCCR	2 cut(s)	102, 1078
Ecl136II	GAGCTC	1 cut(s)	66
Eco130I	CCWWGG	5 cut(s)	348, 835, 1065, 1096, 1210
Eco147I	AGGCCT	2 cut(s)	178, 834
Eco24I	GRGCYC	2 cut(s)	68, 991
Eco31I	GGTCTC	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	600
Eco88I	CYCGRG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	66
EcoO109I	RGGNCCY	2 cut(s)	987, 988
EcoRII	CCWGG	1 cut(s)	427
EcoT14I	CCWWGG	5 cut(s)	348, 835, 1065, 1096, 1210
EcoT38I	GRGCYC	2 cut(s)	68, 991
ErhI	CCWWGG	5 cut(s)	348, 835, 1065, 1096, 1210
FaeI	CATG	3 cut(s)	311, 1069, 1214
FalI	AAGNNNNNCTT	2 cut(s)	924, 956
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	3 cut(s)	307, 1065, 1210
Fnu4HI	GCNGC	4 cut(s)	576, 585, 885, 1089
FokI	GGATG	2 cut(s)	397, 731
FriOI	GRGCYC	2 cut(s)	68, 991
Fsp4HI	GCNGC	4 cut(s)	576, 585, 885, 1089
FspBI	CTAG	4 cut(s)	858, 1056, 1121, 1203
GluI	GCNGC	4 cut(s)	576, 585, 885, 1089
GsuI	CTGGAG	1 cut(s)	1178
HaeIII	GGCC	8 cut(s)	104, 178, 347, 834, 989, 1080, 1095, 1209
HgaI	GACGC	1 cut(s)	488
Hin1II	CATG	3 cut(s)	311, 1069, 1214
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	3 cut(s)	559, 649, 787
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	154, 694
Hpy188I	TCNGA	8 cut(s)	63, 162, 183, 195, 254, 564, 661, 1144
Hpy188III	TCNNGA	7 cut(s)	90, 139, 373, 761, 1020, 1121, 1157
Hpy8I	GTNNAC	2 cut(s)	154, 694
HpyAV	CCTTC	4 cut(s)	608, 683, 722, 824
HpyCH4III	ACNGT	3 cut(s)	49, 151, 519
HpyCH4IV	ACGT	2 cut(s)	156, 232
HpyCH4V	TGCA	5 cut(s)	317, 575, 609, 884, 1010
HpyF10VI	GCNNNNNNNGC	6 cut(s)	353, 581, 584, 593, 686, 1077
HpyF3I	CTNAG	3 cut(s)	60, 77, 371
HpySE526I	ACGT	2 cut(s)	156, 232
Hsp92II	CATG	3 cut(s)	311, 1069, 1214
Kzo9I	GATC	5 cut(s)	33, 249, 322, 1117, 1147
LmnI	GCTCC	4 cut(s)	205, 298, 527, 743
Lsp1109I	GCAGC	4 cut(s)	571, 587, 896, 1075
LweI	GCATC	2 cut(s)	709, 1025
MaeI	CTAG	4 cut(s)	858, 1056, 1121, 1203
MaeII	ACGT	2 cut(s)	156, 232
MaeIII	GTNAC	2 cut(s)	310, 844
MalI	GATC	5 cut(s)	35, 251, 324, 1119, 1149
MboI	GATC	5 cut(s)	33, 249, 322, 1117, 1147
MboII	GAAGA	2 cut(s)	944, 1157
MfeI	CAATTG	1 cut(s)	9
MflI	RGATCY	1 cut(s)	1147
MhlI	GDGCHC	2 cut(s)	68, 991
MlsI	TGGCCA	2 cut(s)	104, 1080
MluCI	AATT	5 cut(s)	9, 130, 474, 655, 767
MluNI	TGGCCA	2 cut(s)	104, 1080
MlyI	GAGTC	1 cut(s)	796
Mox20I	TGGCCA	2 cut(s)	104, 1080
MroXI	GAANNNNTTC	1 cut(s)	672
MscI	TGGCCA	2 cut(s)	104, 1080
MseI	TTAA	7 cut(s)	621, 629, 636, 918, 954, 960, 1107
MslI	CAYNNNNRTG	2 cut(s)	335, 819
Msp20I	TGGCCA	2 cut(s)	104, 1080
MspA1I	CMGCKG	2 cut(s)	578, 887
MspCI	CTTAAG	1 cut(s)	635
MspR9I	CCNGG	1 cut(s)	429
MunI	CAATTG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	6 cut(s)	353, 581, 584, 593, 686, 1077
NcoI	CCATGG	2 cut(s)	1065, 1210
NdeII	GATC	5 cut(s)	33, 249, 322, 1117, 1147
NlaIII	CATG	3 cut(s)	311, 1069, 1214
NlaIV	GGNNCC	2 cut(s)	988, 989
NmuCI	GTSAC	1 cut(s)	310
PaeR7I	CTCGAG	1 cut(s)	137
PceI	AGGCCT	2 cut(s)	178, 834
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	2 cut(s)	559, 649
PkrI	GCNGC	4 cut(s)	577, 586, 886, 1090
PleI	GAGTC	1 cut(s)	795
PpsI	GAGTC	1 cut(s)	795
PsiI	TTATAA	1 cut(s)	1188
Psp124BI	GAGCTC	1 cut(s)	68
Psp1406I	AACGTT	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	2 cut(s)	988, 989
PspOMI	GGGCCC	1 cut(s)	987
PspPI	GGNCC	2 cut(s)	987, 988
PstI	CTGCAG	2 cut(s)	319, 577
PsuI	RGATCY	1 cut(s)	1147
PvuII	CAGCTG	2 cut(s)	578, 887
RseI	CAYNNNNRTG	2 cut(s)	335, 819
SacI	GAGCTC	1 cut(s)	68
SaqAI	TTAA	7 cut(s)	621, 629, 636, 918, 954, 960, 1107
SatI	GCNGC	4 cut(s)	576, 585, 885, 1089
Sau3AI	GATC	5 cut(s)	33, 249, 322, 1117, 1147
Sau96I	GGNCC	2 cut(s)	987, 988
SchI	GAGTC	1 cut(s)	796
ScrFI	CCNGG	1 cut(s)	429
SduI	GDGCHC	2 cut(s)	68, 991
SfaNI	GCATC	2 cut(s)	709, 1025
SfcI	CTRYAG	2 cut(s)	315, 573
Sfr274I	CTCGAG	1 cut(s)	137
SlaI	CTCGAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	2 cut(s)	335, 819
SmlI	CTYRAG	3 cut(s)	137, 635, 761
SmoI	CTYRAG	3 cut(s)	137, 635, 761
Sse9I	AATT	5 cut(s)	9, 130, 474, 655, 767
SseBI	AGGCCT	2 cut(s)	178, 834
SsiI	CCGC	1 cut(s)	333
SspMI	CTAG	4 cut(s)	858, 1056, 1121, 1203
SstI	GAGCTC	1 cut(s)	68
StuI	AGGCCT	2 cut(s)	178, 834
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	5 cut(s)	348, 835, 1065, 1096, 1210
TaaI	ACNGT	3 cut(s)	49, 151, 519
TaiI	ACGT	2 cut(s)	159, 235
TaqI	TCGA	3 cut(s)	138, 221, 901
TasI	AATT	5 cut(s)	9, 130, 474, 655, 767
TfiI	GAWTC	2 cut(s)	559, 649
Tru1I	TTAA	7 cut(s)	621, 629, 636, 918, 954, 960, 1107
Tru9I	TTAA	7 cut(s)	621, 629, 636, 918, 954, 960, 1107
TscAI	CASTG	2 cut(s)	553, 1232
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	4 cut(s)	575, 584, 884, 1088
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	3 cut(s)	759, 803, 1182
TspRI	CASTG	2 cut(s)	553, 1232
Vha464I	CTTAAG	1 cut(s)	635
XapI	RAATTY	1 cut(s)	655
XbaI	TCTAGA	1 cut(s)	1120
XcmI	CCANNNNNNNNNTGG	2 cut(s)	91, 1088
XhoI	CTCGAG	1 cut(s)	137
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	4 cut(s)	858, 1056, 1121, 1203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.