Rorug06G0424500

L-Ala-D L-amino acid

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005635
Physical Location & Seq
Forward (+)
56233458 .. 56233808
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0424500.1

Sequence Viewer

Length: 351 bp
ATGCACATGCAACTACTCCACACTGACCACGTCGTCATTTTCGACCGCACCGACTTCGGCGTATCCAACCTCTCACTCCCCGATGGGAAATGTCGCTTCGACCCCGATGACACTGCGCTCATAATCGACTGCAGCACACATTCAGCTGAAAACGACGTTGCCAACAATTCCATTCGACGTCTTATGGTGCAAACTGATGTCTGGTGCTCCTCTGACTCAGCAATGCCGGACGGTCGTCTAGTCCAGACTGGTGGTTATAATGACGGAGAACGTAGGGTCAGGTTTTTCGAGTCTTGTCCGAATTGTGATTGTCATGAGATTGAGTACGGTTTAGCCGCTCCGCGATGGTAG

Protein Analysis

116

Amino Acids

13.11

Weight (kDa)

4.72

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 1 - 116 1.3e-42 Glyoxal oxidase N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 258
AasI GACNNNNNNGTC 1 cut(s) 32
AatII GACGTC 1 cut(s) 181
AccBSI CCGCTC 1 cut(s) 338
AccII CGCG 1 cut(s) 343
AciI CCGC 3 cut(s) 46, 336, 341
AcyI GRCGYC 1 cut(s) 178
AfaI GTAC 1 cut(s) 326
AjiI CACGTC 1 cut(s) 31
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Alw21I GWGCWC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 144
BccI CCATC 2 cut(s) 77, 339
BcgI CGANNNNNNTGC 4 cut(s) 37, 71, 95, 129
BciVI GTATCC 1 cut(s) 73
BfaI CTAG 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 130
BfuI GTATCC 1 cut(s) 73
BisI GCNGC 2 cut(s) 133, 336
BlsI GCNGC 2 cut(s) 134, 337
BmgBI CACGTC 1 cut(s) 31
BoxI GACNNNNGTC 1 cut(s) 234
BsaHI GRCGYC 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 228
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 1 cut(s) 199
BseXI GCAGC 1 cut(s) 144
Bsh1236I CGCG 1 cut(s) 343
Bsh1285I CGRYCG 2 cut(s) 46, 235
BsiEI CGRYCG 2 cut(s) 46, 235
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 209
BspACI CCGC 3 cut(s) 46, 336, 341
BspCNI CTCAG 1 cut(s) 230
BspFNI CGCG 1 cut(s) 343
BspHI TCATGA 1 cut(s) 313
BspMAI CTGCAG 1 cut(s) 134
BsrBI CCGCTC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 228
BsrI ACTGG 1 cut(s) 253
BssNI GRCGYC 1 cut(s) 178
Bst4CI ACNGT 2 cut(s) 233, 329
BstACI GRCGYC 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 343
BstHHI GCGC 1 cut(s) 118
BstMCI CGRYCG 2 cut(s) 46, 235
BstNSI RCATGY 1 cut(s) 10
BstPAI GACNNNNGTC 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 130
BstUI CGCG 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 144
BstXI CCANNNNNNTGG 1 cut(s) 251
BsuI GTATCC 1 cut(s) 73
BtrI CACGTC 1 cut(s) 31
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 21, 111
CciI TCATGA 1 cut(s) 313
CfoI GCGC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 325
CviAII CATG 2 cut(s) 7, 314
CviJI RGCY 2 cut(s) 146, 335
CviKI_1 RGCY 2 cut(s) 146, 335
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 1 cut(s) 217
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
FaeI CATG 2 cut(s) 10, 317
FaiI YATR 5 cut(s) 8, 122, 185, 258, 315
FatI CATG 2 cut(s) 6, 313
Fnu4HI GCNGC 2 cut(s) 133, 336
Fsp4HI GCNGC 2 cut(s) 133, 336
FspBI CTAG 1 cut(s) 239
GlaI GCGC 1 cut(s) 117
GluI GCNGC 2 cut(s) 133, 336
HapII CCGG 1 cut(s) 227
HhaI GCGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 178
Hin1II CATG 2 cut(s) 10, 317
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HinfI GANTC 2 cut(s) 215, 290
HpaII CCGG 1 cut(s) 227
Hpy188I TCNGA 2 cut(s) 214, 300
Hpy188III TCNNGA 2 cut(s) 244, 314
Hpy99I CGWCG 3 cut(s) 35, 158, 180
HpyCH4III ACNGT 2 cut(s) 233, 329
HpyCH4IV ACGT 4 cut(s) 30, 156, 178, 271
HpyCH4V TGCA 4 cut(s) 4, 10, 132, 190
HpyF3I CTNAG 1 cut(s) 217
HpySE526I ACGT 4 cut(s) 30, 156, 178, 271
Hsp92I GRCGYC 1 cut(s) 178
Hsp92II CATG 2 cut(s) 10, 317
HspAI GCGC 1 cut(s) 116
LmnI GCTCC 2 cut(s) 212, 343
LpnPI CCDG 5 cut(s) 187, 234, 240, 257, 265
Lsp1109I GCAGC 1 cut(s) 144
MaeI CTAG 1 cut(s) 239
MaeII ACGT 4 cut(s) 30, 156, 178, 271
MbiI CCGCTC 1 cut(s) 338
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 2 cut(s) 166, 301
MlyI GAGTC 2 cut(s) 209, 299
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 2 cut(s) 80, 220
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 1 cut(s) 227
MvnI CGCG 1 cut(s) 343
NlaIII CATG 2 cut(s) 10, 317
NspI RCATGY 1 cut(s) 10
PagI TCATGA 1 cut(s) 313
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 48
PflFI GACNNNGTC 1 cut(s) 29
PkrI GCNGC 2 cut(s) 134, 337
PleI GAGTC 2 cut(s) 209, 298
PpsI GAGTC 2 cut(s) 209, 298
PshAI GACNNNNGTC 1 cut(s) 234
PsiI TTATAA 1 cut(s) 258
PstI CTGCAG 1 cut(s) 134
PsyI GACNNNGTC 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SatI GCNGC 2 cut(s) 133, 336
SchI GAGTC 2 cut(s) 209, 299
SduI GDGCHC 1 cut(s) 209
SetI ASST 7 cut(s) 33, 72, 148, 159, 181, 274, 284
SfcI CTRYAG 1 cut(s) 130
Sse9I AATT 2 cut(s) 166, 301
SsiI CCGC 3 cut(s) 46, 336, 341
SspMI CTAG 1 cut(s) 239
TaaI ACNGT 2 cut(s) 233, 329
TaiI ACGT 4 cut(s) 33, 159, 181, 274
TaqI TCGA 5 cut(s) 42, 99, 126, 175, 288
TasI AATT 2 cut(s) 166, 301
TauI GCSGC 1 cut(s) 338
TscAI CASTG 2 cut(s) 28, 118
TseI GCWGC 1 cut(s) 132
TspGWI ACGGA 1 cut(s) 279
TspRI CASTG 2 cut(s) 28, 118
Tth111I GACNNNGTC 1 cut(s) 29
XceI RCATGY 1 cut(s) 10
XspI CTAG 1 cut(s) 239
ZraI GACGTC 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.