Rw4G009460

L-Ala-D L-amino acid

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
21294767 .. 21297750
2984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G009460.1

Sequence Viewer

Length: 1419 bp
ATGGCCTCCTCCCCCGGCCATTATCGGACTCGGAGCCTCCAACTCCACTCCCCGGGTCGGGTTCTTCCGCCACTCCAACCCCAAACTCGGCGAGCAGCTCCTCTACTTCATCCTCTCTTCCCTCCGTGGCCCAATTCAATCCGCCAAGGTTGTGCAAGGGTGGGAAAGAATCTAAATTCAGACATAGAAGTCCTTCAAGCTATAAGAGCAGTCCACCTTGATTGCTCTTTTATCTTGGACGCTAACGAAGGATATAGCTCCAATGAAGCTATCCAAGTTCTTGAGAAATTATATGAGGTGGGAGTGAGTCCAGTTCTCTTTGAACAACCAGTTCATAGAGATGATTGGGAAGGCCTTGGATATGTTACTTGTATTGCTAGAGAAAGATATGGAGTATCAGTTGCAACTGATGAGAGCTCTCGAAGTATAGTGGATGTTAAGAAAATAGCAGAAGAAAATCTTGCTAATGTCATTAGCATTAAACTTACTAAAGTTGGGGTTGTTGGGGCCCTTGAAATCATTGAGGTTGCAAGAGCATCGGGATTGGATTTGATGATTGGTGGTATGGTTGAGACTAGACTCGCCATGGGCTTTTCTGGCCACCTTGCTGCTGGCCTTGGGTGTTTTAAGTTTATTGATCTAGATACGCCCCTATTGCTGTCAGAAGATCCAGTTCTGGAGGGTTATGAAGTTTCGGGTGCCATTTATAAGTTCAACAACGCTAGAGGCCATGGTGGATTTCTCCACTGGGACAACCTTGCTTGTTGTAAATTTGATTTTGATTCCTGCAGATACCTGTATGAGCTGGATGTCCATCTAAACCGCTTCCTCAGATCAGCTTCAAAAGCAAGGATCTCCTCTCCCTTTGATCGGTCAACTCTTCGGAGCATTCTTGTGCAACTGGCGGCAGGGTCACAGATCAAGAAAGGAACTCTAAGATATTGGATGAGTGCTGGTCCTGGTGATTTTTTGCTCCAACCTACAGGGTGCCCAACATCTGCATTCTATGCAGTAGTCATTGATGAGGACTTCAATCAGTGCAAAGAAGGGGTTAAAGTGATCACTTCCTCTATTCCCATGAAGTCACCAGAAATGGCGACAATGAAGAATGTGAACTACCTTCCGAATATCCTTGCAAAAATGGAAGCTGAAGACAAAGGAGCCTTTGCTTCCATATGGGTGGATGAGAAGGGTTACATAGCAGAAGGTCCAAATGTGAATGTAGCTTTTATAACACATGACAAGGAGCTTCTTGTACCCTTCTTTGACAAGATCCTTGGTGGTTGTACCGTGTTAAGGCTTCTTGAACTAGCACCCAAGTTGGTGGGAGAATTGACAATGGCACTCTCCGATCTGGTGTGGGATGATATGGTAGCAGGATCTACTGAAACACAGAGGACAGCAGTTCCCTACATGTAA

Protein Analysis

472

Amino Acids

51.9

Weight (kDa)

5.66

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MR_MLE_C PF13378 54 - 245 1.4e-25 Enolase C-terminal domain-like
Aminotran_4 PF01063 267 - 441 7.8e-31 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 708, 1232
AasI GACNNNNNNGTC 1 cut(s) 188
AccB1I GGYRCC 2 cut(s) 698, 987
AciI CCGC 4 cut(s) 68, 142, 823, 905
AclWI GGATC 4 cut(s) 662, 860, 1267, 1387
AcoI YGGCCR 2 cut(s) 16, 598
AcsI RAATTY 2 cut(s) 175, 770
AcuI CTGAAG 1 cut(s) 1170
AfaI GTAC 2 cut(s) 1257, 1288
AfiI CCNNNNNNNGG 6 cut(s) 52, 57, 58, 87, 870, 1296
AflIII ACRYGT 1 cut(s) 1413
AgsI TTSAA 8 cut(s) 138, 197, 323, 515, 715, 843, 1033, 1307
AjnI CCWGG 1 cut(s) 958
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 1 cut(s) 566
AlwI GGATC 4 cut(s) 662, 860, 1267, 1387
Ama87I CYCGRG 1 cut(s) 52
AoxI GGCC 8 cut(s) 3, 16, 128, 352, 507, 598, 613, 727
ApaI GGGCCC 1 cut(s) 511
ApeKI GCWGC 2 cut(s) 95, 608
ApoI RAATTY 2 cut(s) 175, 770
Asp700I GAANNNNTTC 1 cut(s) 192
AspS9I GGNCC 5 cut(s) 129, 507, 508, 956, 1208
AsuC2I CCSGG 3 cut(s) 15, 53, 54
AsuHPI GGTGA 2 cut(s) 974, 1077
AvaI CYCGRG 1 cut(s) 52
AvaII GGWCC 2 cut(s) 956, 1208
BaeGI GKGCMC 2 cut(s) 511, 992
BalI TGGCCA 1 cut(s) 600
BanI GGYRCC 2 cut(s) 698, 987
BanII GRGCYC 2 cut(s) 419, 511
BbsI GAAGAC 1 cut(s) 1158
Bbv12I GWGCWC 1 cut(s) 419
BbvI GCAGC 2 cut(s) 107, 595
BccI CCATC 1 cut(s) 822
BcgI CGANNNNNNTGC 2 cut(s) 519, 553
BciT130I CCWGG 1 cut(s) 960
BclI TGATCA 1 cut(s) 1059
BcnI CCSGG 3 cut(s) 15, 53, 54
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 5 cut(s) 378, 576, 641, 723, 1310
BfmI CTRYAG 2 cut(s) 787, 981
BisI GCNGC 3 cut(s) 96, 609, 906
BlsI GCNGC 3 cut(s) 97, 610, 907
Bme1390I CCNGG 4 cut(s) 15, 53, 54, 960
Bme18I GGWCC 2 cut(s) 956, 1208
BmeT110I CYCGRG 1 cut(s) 52
BmgT120I GGNCC 5 cut(s) 129, 507, 508, 956, 1208
BmiI GGNNCC 6 cut(s) 35, 508, 509, 700, 989, 1162
BmrFI CCNGG 4 cut(s) 15, 53, 54, 960
BmrI ACTGGG 1 cut(s) 757
BmsI GCATC 1 cut(s) 545
BmuI ACTGGG 1 cut(s) 757
BpiI GAAGAC 1 cut(s) 1158
BpmI CTGGAG 1 cut(s) 698
BpuEI CTTGAG 1 cut(s) 302
BpuMI CCSGG 3 cut(s) 15, 53, 54
BsaBI GATNNNNATC 1 cut(s) 813
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 6 cut(s) 52, 57, 58, 87, 870, 1296
Bse1I ACTGG 5 cut(s) 311, 329, 671, 752, 906
Bse8I GATNNNNATC 1 cut(s) 813
BseBI CCWGG 1 cut(s) 960
BseGI GGATG 6 cut(s) 109, 439, 814, 951, 1189, 1369
BseJI GATNNNNATC 1 cut(s) 813
BseLI CCNNNNNNNGG 6 cut(s) 52, 57, 58, 87, 870, 1296
BseMII CTCAG 1 cut(s) 844
BseNI ACTGG 5 cut(s) 311, 329, 671, 752, 906
BseRI GAGGAG 2 cut(s) 90, 847
BseSI GKGCMC 2 cut(s) 511, 992
BseXI GCAGC 2 cut(s) 107, 595
BshFI GGCC 8 cut(s) 5, 18, 130, 354, 509, 600, 615, 729
BshNI GGYRCC 2 cut(s) 698, 987
BsiHKAI GWGCWC 1 cut(s) 419
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 2 cut(s) 15, 53
BslFI GGGAC 1 cut(s) 764
BslI CCNNNNNNNGG 6 cut(s) 52, 57, 58, 87, 870, 1296
BsmAI GTCTC 1 cut(s) 566
BsmFI GGGAC 1 cut(s) 764
BsmI GAATGC 2 cut(s) 888, 1001
BsnI GGCC 8 cut(s) 5, 18, 130, 354, 509, 600, 615, 729
BsoBI CYCGRG 1 cut(s) 52
Bsp120I GGGCCC 1 cut(s) 507
Bsp1286I GDGCHC 3 cut(s) 419, 511, 992
Bsp19I CCATGG 2 cut(s) 585, 730
BspACI CCGC 4 cut(s) 68, 142, 823, 905
BspANI GGCC 8 cut(s) 5, 18, 130, 354, 509, 600, 615, 729
BspCNI CTCAG 1 cut(s) 843
BspLI GGNNCC 6 cut(s) 35, 508, 509, 700, 989, 1162
BspMAI CTGCAG 1 cut(s) 791
BspPI GGATC 4 cut(s) 662, 860, 1267, 1387
BspT107I GGYRCC 2 cut(s) 698, 987
BsrI ACTGG 5 cut(s) 311, 329, 671, 752, 906
BssT1I CCWWGG 6 cut(s) 145, 355, 585, 616, 730, 1276
Bst2UI CCWGG 1 cut(s) 960
Bst4CI ACNGT 1 cut(s) 1291
Bst6I CTCTTC 2 cut(s) 122, 885
BstAPI GCANNNNNTGC 1 cut(s) 1007
BstC8I GCNNGC 2 cut(s) 93, 613
BstDEI CTNAG 2 cut(s) 830, 935
BstDSI CCRYGG 3 cut(s) 125, 585, 730
BstF5I GGATG 6 cut(s) 109, 439, 814, 951, 1189, 1369
BstMAI GTCTC 1 cut(s) 566
BstMWI GCNNNNNNNGC 5 cut(s) 206, 597, 655, 845, 1007
BstNI CCWGG 1 cut(s) 960
BstNSI RCATGY 1 cut(s) 1417
BstSCI CCNGG 4 cut(s) 13, 51, 52, 958
BstSFI CTRYAG 2 cut(s) 787, 981
BstSLI GKGCMC 2 cut(s) 511, 992
BstV1I GCAGC 2 cut(s) 107, 595
BstV2I GAAGAC 1 cut(s) 1158
BstX2I RGATCY 4 cut(s) 667, 852, 1272, 1379
BstXI CCANNNNNNTGG 2 cut(s) 1180, 1324
BstYI RGATCY 4 cut(s) 667, 852, 1272, 1379
BsuRI GGCC 8 cut(s) 5, 18, 130, 354, 509, 600, 615, 729
BtgI CCRYGG 3 cut(s) 125, 585, 730
BtsCI GGATG 6 cut(s) 109, 439, 814, 951, 1189, 1369
BtsIMutI CAGTG 2 cut(s) 745, 1043
Cac8I GCNNGC 2 cut(s) 93, 613
Cfr13I GGNCC 5 cut(s) 129, 507, 508, 956, 1208
Cfr9I CCCGGG 1 cut(s) 52
CseI GACGC 1 cut(s) 248
Csp6I GTAC 2 cut(s) 1256, 1287
CspCI CAANNNNNGTGG 2 cut(s) 203, 238
CviAII CATG 5 cut(s) 586, 731, 1078, 1238, 1414
CviQI GTAC 2 cut(s) 1256, 1287
DdeI CTNAG 2 cut(s) 830, 935
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
EaeI YGGCCR 2 cut(s) 16, 598
Eam1104I CTCTTC 2 cut(s) 122, 885
EarI CTCTTC 2 cut(s) 122, 885
EciI GGCGGA 2 cut(s) 57, 131
Ecl136II GAGCTC 1 cut(s) 417
Eco130I CCWWGG 6 cut(s) 145, 355, 585, 616, 730, 1276
Eco147I AGGCCT 1 cut(s) 354
Eco24I GRGCYC 2 cut(s) 419, 511
Eco47I GGWCC 2 cut(s) 956, 1208
Eco53kI GAGCTC 1 cut(s) 417
Eco57I CTGAAG 1 cut(s) 1170
Eco88I CYCGRG 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 417
EcoO109I RGGNCCY 2 cut(s) 507, 508
EcoRII CCWGG 1 cut(s) 958
EcoT14I CCWWGG 6 cut(s) 145, 355, 585, 616, 730, 1276
EcoT38I GRGCYC 2 cut(s) 419, 511
ErhI CCWWGG 6 cut(s) 145, 355, 585, 616, 730, 1276
FaeI CATG 5 cut(s) 589, 734, 1081, 1241, 1417
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FaqI GGGAC 1 cut(s) 764
FatI CATG 5 cut(s) 585, 730, 1077, 1237, 1413
FauNDI CATATG 1 cut(s) 1175
FbaI TGATCA 1 cut(s) 1059
Fnu4HI GCNGC 3 cut(s) 96, 609, 906
FokI GGATG 6 cut(s) 96, 446, 821, 958, 1196, 1376
FriOI GRGCYC 2 cut(s) 419, 511
Fsp4HI GCNGC 3 cut(s) 96, 609, 906
FspBI CTAG 5 cut(s) 378, 576, 641, 723, 1310
GluI GCNGC 3 cut(s) 96, 609, 906
GsuI CTGGAG 1 cut(s) 698
HaeIII GGCC 8 cut(s) 5, 18, 130, 354, 509, 600, 615, 729
HapII CCGG 2 cut(s) 15, 53
HgaI GACGC 1 cut(s) 248
Hin1II CATG 5 cut(s) 589, 734, 1081, 1241, 1417
HincII GTYRAC 1 cut(s) 876
HindII GTYRAC 1 cut(s) 876
HinfI GANTC 5 cut(s) 28, 169, 307, 579, 782
HpaII CCGG 2 cut(s) 15, 53
HphI GGTGA 2 cut(s) 974, 1077
Hpy166II GTNNAC 3 cut(s) 214, 876, 1114
Hpy188I TCNGA 8 cut(s) 27, 33, 181, 664, 833, 885, 1125, 1351
Hpy188III TCNNGA 7 cut(s) 281, 420, 540, 641, 677, 922, 1304
Hpy8I GTNNAC 3 cut(s) 214, 876, 1114
HpyAV CCTTC 8 cut(s) 203, 242, 344, 1040, 1130, 1183, 1199, 1270
HpyCH4III ACNGT 1 cut(s) 1291
HpyCH4V TGCA 9 cut(s) 155, 404, 530, 789, 898, 1001, 1010, 1041, 1136
HpyF10VI GCNNNNNNNGC 5 cut(s) 206, 597, 655, 845, 1007
HpyF3I CTNAG 2 cut(s) 830, 935
Hsp92II CATG 5 cut(s) 589, 734, 1081, 1241, 1417
Ksp22I TGATCA 1 cut(s) 1059
LmnI GCTCC 7 cut(s) 33, 103, 263, 885, 978, 1160, 1246
Lsp1109I GCAGC 2 cut(s) 107, 595
LweI GCATC 1 cut(s) 545
MaeI CTAG 5 cut(s) 378, 576, 641, 723, 1310
MaeIII GTNAC 4 cut(s) 364, 912, 1083, 1193
MboII GAAGA 7 cut(s) 56, 109, 464, 677, 872, 1117, 1163
MflI RGATCY 4 cut(s) 667, 852, 1272, 1379
MhlI GDGCHC 3 cut(s) 419, 511, 992
MlsI TGGCCA 1 cut(s) 600
MluCI AATT 5 cut(s) 133, 175, 287, 770, 1331
MluNI TGGCCA 1 cut(s) 600
MlyI GAGTC 3 cut(s) 22, 316, 573
MmeI TCCRAC 3 cut(s) 64, 100, 1000
Mox20I TGGCCA 1 cut(s) 600
MroXI GAANNNNTTC 1 cut(s) 192
MscI TGGCCA 1 cut(s) 600
MseI TTAA 5 cut(s) 438, 480, 627, 1053, 1295
MslI CAYNNNNRTG 3 cut(s) 339, 893, 1178
Msp20I TGGCCA 1 cut(s) 600
MspI CCGG 2 cut(s) 15, 53
MspR9I CCNGG 4 cut(s) 15, 53, 54, 960
Mva1269I GAATGC 2 cut(s) 888, 1001
MvaI CCWGG 1 cut(s) 960
MwoI GCNNNNNNNGC 5 cut(s) 206, 597, 655, 845, 1007
NciI CCSGG 3 cut(s) 15, 53, 54
NcoI CCATGG 2 cut(s) 585, 730
NdeI CATATG 1 cut(s) 1175
NlaIII CATG 5 cut(s) 589, 734, 1081, 1241, 1417
NlaIV GGNNCC 6 cut(s) 35, 508, 509, 700, 989, 1162
NmeAIII GCCGAG 1 cut(s) 67
NmuCI GTSAC 2 cut(s) 912, 1083
NspI RCATGY 1 cut(s) 1417
PceI AGGCCT 1 cut(s) 354
PciI ACATGT 1 cut(s) 1413
PctI GAATGC 2 cut(s) 888, 1001
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 2 cut(s) 169, 782
PkrI GCNGC 3 cut(s) 97, 610, 907
PleI GAGTC 3 cut(s) 22, 315, 573
PpsI GAGTC 3 cut(s) 22, 315, 573
PscI ACATGT 1 cut(s) 1413
PsiI TTATAA 2 cut(s) 708, 1232
Psp124BI GAGCTC 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 958
PspGI CCWGG 1 cut(s) 958
PspN4I GGNNCC 6 cut(s) 35, 508, 509, 700, 989, 1162
PspOMI GGGCCC 1 cut(s) 507
PspPI GGNCC 5 cut(s) 129, 507, 508, 956, 1208
PstI CTGCAG 1 cut(s) 791
PsuI RGATCY 4 cut(s) 667, 852, 1272, 1379
RsaI GTAC 2 cut(s) 1257, 1288
RsaNI GTAC 2 cut(s) 1256, 1287
RseI CAYNNNNRTG 3 cut(s) 339, 893, 1178
SacI GAGCTC 1 cut(s) 419
SaqAI TTAA 5 cut(s) 438, 480, 627, 1053, 1295
SatI GCNGC 3 cut(s) 96, 609, 906
Sau96I GGNCC 5 cut(s) 129, 507, 508, 956, 1208
SchI GAGTC 3 cut(s) 22, 316, 573
ScrFI CCNGG 4 cut(s) 15, 53, 54, 960
SduI GDGCHC 3 cut(s) 419, 511, 992
SfaNI GCATC 1 cut(s) 545
SfcI CTRYAG 2 cut(s) 787, 981
SinI GGWCC 2 cut(s) 956, 1208
SmaI CCCGGG 1 cut(s) 54
SmiMI CAYNNNNRTG 3 cut(s) 339, 893, 1178
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 5 cut(s) 133, 175, 287, 770, 1331
SseBI AGGCCT 1 cut(s) 354
SsiI CCGC 4 cut(s) 68, 142, 823, 905
SspMI CTAG 5 cut(s) 378, 576, 641, 723, 1310
SstI GAGCTC 1 cut(s) 419
StuI AGGCCT 1 cut(s) 354
StyD4I CCNGG 4 cut(s) 13, 51, 52, 958
StyI CCWWGG 6 cut(s) 145, 355, 585, 616, 730, 1276
TaaI ACNGT 1 cut(s) 1291
TaqI TCGA 1 cut(s) 421
TaqII GACCGA 1 cut(s) 861
TasI AATT 5 cut(s) 133, 175, 287, 770, 1331
TauI GCSGC 1 cut(s) 908
TfiI GAWTC 2 cut(s) 169, 782
Tru1I TTAA 5 cut(s) 438, 480, 627, 1053, 1295
Tru9I TTAA 5 cut(s) 438, 480, 627, 1053, 1295
TscAI CASTG 2 cut(s) 752, 1043
TseFI GTSAC 2 cut(s) 912, 1083
TseI GCWGC 2 cut(s) 95, 608
Tsp45I GTSAC 2 cut(s) 912, 1083
TspDTI ATGAA 6 cut(s) 98, 279, 323, 702, 1094, 1118
TspGWI ACGGA 1 cut(s) 114
TspMI CCCGGG 1 cut(s) 52
TspRI CASTG 2 cut(s) 752, 1043
VpaK11BI GGWCC 2 cut(s) 956, 1208
XapI RAATTY 2 cut(s) 175, 770
XbaI TCTAGA 1 cut(s) 640
XceI RCATGY 1 cut(s) 1417
XcmI CCANNNNNNNNNTGG 1 cut(s) 608
XmaI CCCGGG 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 5 cut(s) 378, 576, 641, 723, 1310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.