Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006879

Physical Location & Seq

Genomic Coordinates Forward (+)

17964805 .. 17968156

Gene Structure 3352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G175200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGACTGTTGCTTCTATATGTTTATGTAGGAAGATGTCACGGGGGTGGGCTAAGTCTGGTGGTTGGGCTGCCTTTGACCTTAAGCAGCGCCAGAAACAAGGCCTTGAGCCTCAAACTGACACGGACCATTTCCCACCTATACTGACCACTCTCCCCTCTCTGCATCCTTGCGAAAACGTATCAAGGAATAATGACCTTTCAGGCAGGCCTTTCTCTTGTGTACTCCATCCTGTAGATTTTCCAACTTCGACAGAGAATAGGGATGGCAAAAGACCCTTATTATATGGTGATTCTAGTGGCACTTCCATGGAAGATAATAGATCTTCCAAGAAGAAGATCATGGATCTTTACCCTTGGGCTGACGATAGCTTGATTGAGGATATTATGGCTGCAGTGGGTGATGATATTACTAAGGCCTCAACATTATTGAAAGCAATGGTTTCCCCCAGCAGCTTTGAAGAGAATAAGGAAACTGACATTTCAAAAATAAATTCCAATTCTGATATTTATCAAAGTGATAAAACAAAGCATACAAGTTTTCCTCTAGAATCTGCTGCTGACATAGCTGACCTCAACTCTACTTTTGAGAAATGTCTGGAAGAGAATAACATTGAATTGTTAAATGCCCATGATTTCTGTGGGAAAAATCTCCCAAATGATGCTGCAACTATGAAACTGACTCTGGGGAGTTTGGAGTCAGTACCCGTTGAACCTGAGTGGGAAGAGGATGATGTTTACTTGAGGCATCGAAAAGATGCATTAAGAATGATGAGGTCAGCATCTCAGCACTCTAAGGCTGCCACTAATGCCTTTGTAAGAGGTGACCATTTTTCTGCCCAGCGACACTCAAACAAGGCTCGAGAGGAATGGTTGGCTGCTGAAAGCCTTAATAACAAGGCAGCCAAAAAAATTTTAAATATCAGGAATAGCAAAAATGATGTATGGAAACTGGATCTACATGGTCTTCATGCATCAGAAGCAATTCAAGCCCTGCGTGAACACCTGCAGCGAATTGAAACCAAAGTTCTATCTAATCATTCAGTGTCACCAAACAAAGTTAGGATGGAAAAGAGGATTATACGTTCTTCGTCACTCGAATCTTTTAATTGTATGGACACGGAGAAATTGGATCAACAAAAGGCACCATCAACGCAAAGACCAACATCCTTGCAAGTTATCACAGGTATAGGTAATCATAGCCGAGGACAGGCTGCACTTCCAACAGCTGTGGGAAGTTTCCTCAACGATAACGGATATCGTTTTGAAGAGTTGAGGCCAGGTGTAATCACTGTTCGACCCAAGTTTCGTCATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771 Smr

Protein Analysis

439

Amino Acids

49.13

Weight (kDa)

7.25

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23520 AT5G23520
fragaria_vesca	FvH4_1g22090 FvH4_1g22090 FvH4_1g22090 FvH4_1g22090 FvH4_1g22090 FvH4_1g22090
malus_domestica	MD15G1334300.v1.1
prunus_persica	Prupe.6G175200_v2.0.a1 Prupe.6G175200_v2.0.a1 Prupe.6G175200_v2.0.a1
pyrus_communis	pycom15g29120
rosa_chinensis	RchiOBHm_Chr2g0116171
rosa_laevigata	RLG00000018245
rosa_multiflora	Rmu_sc0000863.1_g000045 Rmu_sc0002288.1_g000020 Rmu_sc0004693.1_g000001 Rmu_sc0006942.1_g000002
rosa_roxburghii	Rroxscaffold_2G00127440
rosa_rugosa	Rorug02G0204300 Rorug02G0204400 Rorug02G0204500 Rorug02G0204600
rosa_wichuraiana	Rw1G013010 Rw2G020400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1011
Acc36I	ACCTGC	1 cut(s)	1011
AccB1I	GGYRCC	1 cut(s)	1141
AclWI	GGATC	3 cut(s)	351, 960, 1137
AcsI	RAATTY	2 cut(s)	490, 909
AfaI	GTAC	2 cut(s)	222, 702
AfiI	CCNNNNNNNGG	1 cut(s)	1207
AflII	CTTAAG	1 cut(s)	80
AgsI	TTSAA	8 cut(s)	430, 458, 483, 614, 710, 986, 1016, 1265
AjnI	CCWGG	1 cut(s)	1276
AleI	CACNNNNGTG	1 cut(s)	43
AloI	GAACNNNNNNTCC	2 cut(s)	1066, 1098
AluBI	AGCT	4 cut(s)	369, 453, 566, 1226
AluI	AGCT	4 cut(s)	369, 453, 566, 1226
AlwI	GGATC	3 cut(s)	351, 960, 1137
Ama87I	CYCGRG	1 cut(s)	858
AoxI	GGCC	4 cut(s)	100, 206, 414, 1274
ApoI	RAATTY	2 cut(s)	490, 909
ArsI	GACNNNNNNTTYG	1 cut(s)	1287
Asp700I	GAANNNNTTC	1 cut(s)	981
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	4 cut(s)	299, 410, 833, 1038
AvaI	CYCGRG	1 cut(s)	858
AvaII	GGWCC	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	1141
BbsI	GAAGAC	1 cut(s)	956
BccI	CCATC	4 cut(s)	234, 257, 1057, 1153
BciT130I	CCWGG	1 cut(s)	1278
BfaI	CTAG	2 cut(s)	294, 545
BfmI	CTRYAG	3 cut(s)	231, 390, 1004
BfoI	RGCGCY	1 cut(s)	91
BfrI	CTTAAG	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	1011
BglII	AGATCT	1 cut(s)	320
Bme1390I	CCNGG	1 cut(s)	1278
Bme18I	GGWCC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	858
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	1143
BmrFI	CCNGG	1 cut(s)	1278
BmsI	GCATC	6 cut(s)	172, 649, 745, 754, 788, 980
BpiI	GAAGAC	1 cut(s)	956
BpuEI	CTTGAG	2 cut(s)	125, 760
BsaBI	GATNNNNATC	1 cut(s)	507
BsaJI	CCNNGG	3 cut(s)	306, 353, 1201
Bsc4I	CCNNNNNNNGG	1 cut(s)	1207
Bse1I	ACTGG	1 cut(s)	954
Bse3DI	GCAATG	1 cut(s)	441
Bse8I	GATNNNNATC	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	1278
BseDI	CCNNGG	3 cut(s)	306, 353, 1201
BseGI	GGATG	6 cut(s)	163, 226, 268, 733, 1068, 1163
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	1 cut(s)	1207
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	2 cut(s)	705, 797
BseNI	ACTGG	1 cut(s)	954
BseYI	CCCAGC	2 cut(s)	446, 837
BsgI	GTGCAG	1 cut(s)	1197
BshFI	GGCC	4 cut(s)	102, 208, 416, 1276
BshNI	GGYRCC	1 cut(s)	1141
BsiHKCI	CYCGRG	1 cut(s)	858
BslI	CCNNNNNNNGG	1 cut(s)	1207
BsnI	GGCC	4 cut(s)	102, 208, 416, 1276
BsoBI	CYCGRG	1 cut(s)	858
Bsp143I	GATC	5 cut(s)	320, 336, 343, 952, 1129
Bsp19I	CCATGG	1 cut(s)	306
BspANI	GGCC	4 cut(s)	102, 208, 416, 1276
BspCNI	CTCAG	2 cut(s)	706, 796
BspLI	GGNNCC	1 cut(s)	1143
BspMAI	CTGCAG	2 cut(s)	394, 1008
BspMI	ACCTGC	1 cut(s)	1011
BspPI	GGATC	3 cut(s)	351, 960, 1137
BspT107I	GGYRCC	1 cut(s)	1141
BspTI	CTTAAG	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	954
BssECI	CCNNGG	3 cut(s)	306, 353, 1201
BssMI	GATC	5 cut(s)	320, 336, 343, 952, 1129
BssT1I	CCWWGG	2 cut(s)	306, 353
Bst2UI	CCWGG	1 cut(s)	1278
Bst4CI	ACNGT	2 cut(s)	7, 1291
Bst6I	CTCTTC	4 cut(s)	453, 594, 717, 1260
BstAFI	CTTAAG	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	5 cut(s)	51, 411, 714, 783, 792
BstDSI	CCRYGG	1 cut(s)	306
BstEII	GGTNACC	1 cut(s)	821
BstF5I	GGATG	6 cut(s)	163, 226, 268, 733, 1068, 1163
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	5 cut(s)	323, 339, 346, 955, 1132
BstMBI	GATC	5 cut(s)	320, 336, 343, 952, 1129
BstMWI	GCNNNNNNNGC	4 cut(s)	563, 806, 977, 986
BstNI	CCWGG	1 cut(s)	1278
BstPI	GGTNACC	1 cut(s)	821
BstSCI	CCNGG	1 cut(s)	1276
BstSFI	CTRYAG	3 cut(s)	231, 390, 1004
BstV2I	GAAGAC	1 cut(s)	956
BstX2I	RGATCY	3 cut(s)	320, 343, 952
BstYI	RGATCY	3 cut(s)	320, 343, 952
BsuRI	GGCC	4 cut(s)	102, 208, 416, 1276
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	6 cut(s)	163, 226, 268, 733, 1068, 1163
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	3 cut(s)	399, 1047, 1287
BveI	ACCTGC	1 cut(s)	1011
Cac8I	GCNNGC	1 cut(s)	206
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	124
Csp6I	GTAC	2 cut(s)	221, 701
CspCI	CAANNNNNGTGG	2 cut(s)	1209, 1244
CviAII	CATG	5 cut(s)	307, 340, 629, 959, 968
CviQI	GTAC	2 cut(s)	221, 701
DdeI	CTNAG	5 cut(s)	51, 411, 714, 783, 792
DpnI	GATC	5 cut(s)	322, 338, 345, 954, 1131
DpnII	GATC	5 cut(s)	320, 336, 343, 952, 1129
DraI	TTTAAA	1 cut(s)	915
Eam1104I	CTCTTC	4 cut(s)	453, 594, 717, 1260
EarI	CTCTTC	4 cut(s)	453, 594, 717, 1260
Eco130I	CCWWGG	2 cut(s)	306, 353
Eco147I	AGGCCT	3 cut(s)	102, 208, 416
Eco32I	GATATC	1 cut(s)	1256
Eco47I	GGWCC	1 cut(s)	124
Eco88I	CYCGRG	1 cut(s)	858
Eco91I	GGTNACC	1 cut(s)	821
EcoO65I	GGTNACC	1 cut(s)	821
EcoRII	CCWGG	1 cut(s)	1276
EcoRV	GATATC	1 cut(s)	1256
EcoT14I	CCWWGG	2 cut(s)	306, 353
EcoT22I	ATGCAT	2 cut(s)	760, 973
ErhI	CCWWGG	2 cut(s)	306, 353
FaeI	CATG	5 cut(s)	310, 343, 632, 962, 971
FatI	CATG	5 cut(s)	306, 339, 628, 958, 967
FokI	GGATG	6 cut(s)	150, 213, 275, 740, 1075, 1150
FspBI	CTAG	2 cut(s)	294, 545
GlaI	GCGC	1 cut(s)	89
GsaI	CCCAGC	2 cut(s)	450, 841
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	4 cut(s)	102, 208, 416, 1276
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	5 cut(s)	310, 343, 632, 962, 971
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HinfI	GANTC	5 cut(s)	290, 548, 679, 695, 1097
HphI	GGTGA	4 cut(s)	299, 410, 833, 1038
Hpy166II	GTNNAC	3 cut(s)	221, 736, 998
Hpy188I	TCNGA	2 cut(s)	502, 976
Hpy188III	TCNNGA	4 cut(s)	545, 596, 860, 922
Hpy8I	GTNNAC	3 cut(s)	221, 736, 998
HpyCH4III	ACNGT	2 cut(s)	7, 1291
HpyCH4IV	ACGT	2 cut(s)	177, 1081
HpyCH4V	TGCA	8 cut(s)	163, 392, 665, 758, 971, 1006, 1171, 1214
HpyF10VI	GCNNNNNNNGC	4 cut(s)	563, 806, 977, 986
HpyF3I	CTNAG	5 cut(s)	51, 411, 714, 783, 792
HpySE526I	ACGT	2 cut(s)	177, 1081
Hsp92II	CATG	5 cut(s)	310, 343, 632, 962, 971
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	5 cut(s)	320, 336, 343, 952, 1129
LweI	GCATC	6 cut(s)	172, 649, 745, 754, 788, 980
MaeI	CTAG	2 cut(s)	294, 545
MaeII	ACGT	2 cut(s)	177, 1081
MaeIII	GTNAC	4 cut(s)	36, 821, 1044, 1089
MalI	GATC	5 cut(s)	322, 338, 345, 954, 1131
MboI	GATC	5 cut(s)	320, 336, 343, 952, 1129
MflI	RGATCY	3 cut(s)	320, 343, 952
MluCI	AATT	8 cut(s)	490, 496, 614, 909, 981, 1011, 1105, 1124
MlyI	GAGTC	2 cut(s)	673, 704
MmeI	TCCRAC	2 cut(s)	266, 1244
Mph1103I	ATGCAT	2 cut(s)	760, 973
MroXI	GAANNNNTTC	1 cut(s)	981
MseI	TTAA	6 cut(s)	81, 620, 761, 888, 914, 1104
MslI	CAYNNNNRTG	2 cut(s)	43, 305
MspA1I	CMGCKG	1 cut(s)	1226
MspCI	CTTAAG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	1278
MvaI	CCWGG	1 cut(s)	1278
MwoI	GCNNNNNNNGC	4 cut(s)	563, 806, 977, 986
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	5 cut(s)	320, 336, 343, 952, 1129
NlaIII	CATG	5 cut(s)	310, 343, 632, 962, 971
NlaIV	GGNNCC	1 cut(s)	1143
NmeAIII	GCCGAG	1 cut(s)	1226
NmuCI	GTSAC	4 cut(s)	36, 821, 1044, 1089
NsiI	ATGCAT	2 cut(s)	760, 973
OliI	CACNNNNGTG	1 cut(s)	43
PaeR7I	CTCGAG	1 cut(s)	858
PaqCI	CACCTGC	1 cut(s)	1011
PceI	AGGCCT	3 cut(s)	102, 208, 416
PdmI	GAANNNNTTC	1 cut(s)	981
PfeI	GAWTC	3 cut(s)	290, 548, 1097
PleI	GAGTC	2 cut(s)	673, 703
PpsI	GAGTC	2 cut(s)	673, 703
Psp6I	CCWGG	1 cut(s)	1276
PspEI	GGTNACC	1 cut(s)	821
PspFI	CCCAGC	2 cut(s)	446, 837
PspGI	CCWGG	1 cut(s)	1276
PspN4I	GGNNCC	1 cut(s)	1143
PspPI	GGNCC	1 cut(s)	124
PsrI	GAACNNNNNNTAC	2 cut(s)	1275, 1307
PstI	CTGCAG	2 cut(s)	394, 1008
PsuI	RGATCY	3 cut(s)	320, 343, 952
PvuII	CAGCTG	1 cut(s)	1226
RsaI	GTAC	2 cut(s)	222, 702
RsaNI	GTAC	2 cut(s)	221, 701
RseI	CAYNNNNRTG	2 cut(s)	43, 305
SaqAI	TTAA	6 cut(s)	81, 620, 761, 888, 914, 1104
Sau3AI	GATC	5 cut(s)	320, 336, 343, 952, 1129
Sau96I	GGNCC	1 cut(s)	124
SchI	GAGTC	2 cut(s)	673, 704
ScrFI	CCNGG	1 cut(s)	1278
SfaNI	GCATC	6 cut(s)	172, 649, 745, 754, 788, 980
SfcI	CTRYAG	3 cut(s)	231, 390, 1004
Sfr274I	CTCGAG	1 cut(s)	858
SinI	GGWCC	1 cut(s)	124
SlaI	CTCGAG	1 cut(s)	858
SmiMI	CAYNNNNRTG	2 cut(s)	43, 305
SmlI	CTYRAG	4 cut(s)	80, 104, 739, 858
SmoI	CTYRAG	4 cut(s)	80, 104, 739, 858
Sse9I	AATT	8 cut(s)	490, 496, 614, 909, 981, 1011, 1105, 1124
SseBI	AGGCCT	3 cut(s)	102, 208, 416
SspMI	CTAG	2 cut(s)	294, 545
StuI	AGGCCT	3 cut(s)	102, 208, 416
StyD4I	CCNGG	1 cut(s)	1276
StyI	CCWWGG	2 cut(s)	306, 353
TaaI	ACNGT	2 cut(s)	7, 1291
TaiI	ACGT	2 cut(s)	180, 1084
TaqI	TCGA	5 cut(s)	248, 748, 859, 1095, 1294
TasI	AATT	8 cut(s)	490, 496, 614, 909, 981, 1011, 1105, 1124
TatI	WGTACW	1 cut(s)	220
TfiI	GAWTC	3 cut(s)	290, 548, 1097
Tru1I	TTAA	6 cut(s)	81, 620, 761, 888, 914, 1104
Tru9I	TTAA	6 cut(s)	81, 620, 761, 888, 914, 1104
TscAI	CASTG	3 cut(s)	399, 1047, 1294
TseFI	GTSAC	4 cut(s)	36, 821, 1044, 1089
Tsp45I	GTSAC	4 cut(s)	36, 821, 1044, 1089
TspDTI	ATGAA	2 cut(s)	686, 956
TspGWI	ACGGA	3 cut(s)	137, 1133, 1266
TspRI	CASTG	3 cut(s)	399, 1047, 1294
Vha464I	CTTAAG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	2 cut(s)	490, 909
XbaI	TCTAGA	1 cut(s)	544
XcmI	CCANNNNNNNNNTGG	1 cut(s)	635
XhoI	CTCGAG	1 cut(s)	858
XmnI	GAANNNNTTC	1 cut(s)	981
XspI	CTAG	2 cut(s)	294, 545
Zsp2I	ATGCAT	2 cut(s)	760, 973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.