Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000863.1

Orthogroup ID

OG0006879

Physical Location & Seq

Genomic Coordinates Reverse (-)

150075 .. 150521

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000863.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atggataatgatttatatagaccaaaaccttctaatagtgctggagatgtgaaactgactattaggagtttggagtctactcccatcaaacctaagtgggaagaggatgatgtttacttaagagtacgaacagatgcattaaggatgatgaggtcaatgtctaagtattcgaaagctgccactaatgcctttataagaggtgaccattattttgctcaacaacactcaattaaggctagaaaggaatggttagctgctgaaagccacaataacaaggcagctaaggaaattttaagtatcaaaaattgcaaaaatgatgtttggatattagatttacatggtcttcatgcattagaagcaatttgtgcattgcaagaacacctggagaaaagttggatcaactacagacatcatcaagaaaagcaccaatatcctcacaagtcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1771 Smr

Protein Analysis

148

Amino Acids

17.33

Weight (kDa)

9.19

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23520 AT5G23520
fragaria_vesca	FvH4_1g22090 FvH4_1g22090 FvH4_1g22090 FvH4_1g22090 FvH4_1g22090 FvH4_1g22090
malus_domestica	MD15G1334300.v1.1
prunus_persica	Prupe.6G175200_v2.0.a1 Prupe.6G175200_v2.0.a1 Prupe.6G175200_v2.0.a1
pyrus_communis	pycom15g29120
rosa_chinensis	RchiOBHm_Chr2g0116171
rosa_laevigata	RLG00000018245
rosa_multiflora	Rmu_sc0000863.1_g000045 Rmu_sc0002288.1_g000020 Rmu_sc0004693.1_g000001 Rmu_sc0006942.1_g000002
rosa_roxburghii	Rroxscaffold_2G00127440
rosa_rugosa	Rorug02G0204300 Rorug02G0204400 Rorug02G0204500 Rorug02G0204600
rosa_wichuraiana	Rw1G013010 Rw2G020400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	404
AcsI	RAATTY	1 cut(s)	288
AfaI	GTAC	1 cut(s)	126
AflII	CTTAAG	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	3 cut(s)	176, 254, 281
AluI	AGCT	3 cut(s)	176, 254, 281
AlwI	GGATC	1 cut(s)	404
ApeKI	GCWGC	3 cut(s)	176, 254, 278
ApoI	RAATTY	1 cut(s)	288
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AsuHPI	GGTGA	1 cut(s)	212
AsuII	TTCGAA	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	335
BbvI	GCAGC	3 cut(s)	163, 241, 290
BccI	CCATC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	383
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	403
BfrI	CTTAAG	1 cut(s)	118
BisI	GCNGC	3 cut(s)	177, 255, 279
BlsI	GCNGC	3 cut(s)	178, 256, 280
Bme1390I	CCNGG	1 cut(s)	383
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	335
BpmI	CTGGAG	2 cut(s)	63, 404
Bpu10I	CCTNAGC	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	170
Bse3DI	GCAATG	1 cut(s)	368
BseBI	CCWGG	1 cut(s)	383
BseGI	GGATG	2 cut(s)	112, 150
BseMI	GCAATG	1 cut(s)	368
BseXI	GCAGC	3 cut(s)	163, 241, 290
Bsp119I	TTCGAA	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	396
BspPI	GGATC	1 cut(s)	404
BspT104I	TTCGAA	1 cut(s)	170
BspTI	CTTAAG	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	368
BssMI	GATC	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	383
Bst6I	CTCTTC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	118
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstBI	TTCGAA	1 cut(s)	170
BstDEI	CTNAG	3 cut(s)	93, 162, 282
BstEII	GGTNACC	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	112, 150
BstKTI	GATC	1 cut(s)	399
BstMBI	GATC	1 cut(s)	396
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 356, 365
BstNI	CCWGG	1 cut(s)	383
BstPI	GGTNACC	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	381
BstSFI	CTRYAG	1 cut(s)	403
BstV1I	GCAGC	3 cut(s)	163, 241, 290
BstV2I	GAAGAC	1 cut(s)	335
BtsCI	GGATG	2 cut(s)	112, 150
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	2 cut(s)	338, 347
CviJI	RGCY	5 cut(s)	176, 236, 254, 264, 281
CviKI_1	RGCY	5 cut(s)	176, 236, 254, 264, 281
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	3 cut(s)	93, 162, 282
DpnI	GATC	1 cut(s)	398
DpnII	GATC	1 cut(s)	396
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco91I	GGTNACC	1 cut(s)	200
EcoO65I	GGTNACC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	381
EcoT22I	ATGCAT	2 cut(s)	139, 352
FaeI	CATG	2 cut(s)	341, 350
FaiI	YATR	6 cut(s)	16, 18, 194, 339, 348, 445
FatI	CATG	2 cut(s)	337, 346
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	3 cut(s)	177, 255, 279
FokI	GGATG	2 cut(s)	119, 157
Fsp4HI	GCNGC	3 cut(s)	177, 255, 279
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	3 cut(s)	177, 255, 279
GsuI	CTGGAG	2 cut(s)	63, 404
Hin1II	CATG	2 cut(s)	341, 350
HinfI	GANTC	1 cut(s)	74
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	78, 115
Hpy188III	TCNNGA	1 cut(s)	416
Hpy8I	GTNNAC	2 cut(s)	78, 115
HpyAV	CCTTC	1 cut(s)	39
HpyCH4V	TGCA	5 cut(s)	137, 309, 350, 368, 373
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 356, 365
HpyF3I	CTNAG	3 cut(s)	93, 162, 282
Hsp92II	CATG	2 cut(s)	341, 350
Kzo9I	GATC	1 cut(s)	396
LpnPI	CCDG	3 cut(s)	27, 368, 395
Lsp1109I	GCAGC	3 cut(s)	163, 241, 290
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	1 cut(s)	398
MboI	GATC	1 cut(s)	396
MboII	GAAGA	2 cut(s)	113, 335
MluCI	AATT	4 cut(s)	228, 288, 304, 360
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	374
MnlI	CCTC	4 cut(s)	97, 144, 191, 444
Mph1103I	ATGCAT	2 cut(s)	139, 352
MseI	TTAA	4 cut(s)	119, 140, 231, 293
MspCI	CTTAAG	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	3 cut(s)	185, 356, 365
NdeII	GATC	1 cut(s)	396
NlaIII	CATG	2 cut(s)	341, 350
NmuCI	GTSAC	1 cut(s)	200
NsiI	ATGCAT	2 cut(s)	139, 352
NspV	TTCGAA	1 cut(s)	170
PkrI	GCNGC	3 cut(s)	178, 256, 280
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PsiI	TTATAA	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	381
PspEI	GGTNACC	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	381
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	4 cut(s)	119, 140, 231, 293
SatI	GCNGC	3 cut(s)	177, 255, 279
Sau3AI	GATC	1 cut(s)	396
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	383
SetI	ASST	8 cut(s)	31, 94, 155, 178, 202, 256, 283, 384
SfaNI	GCATC	1 cut(s)	124
SfcI	CTRYAG	1 cut(s)	403
SfuI	TTCGAA	1 cut(s)	170
SgeI	CNNG	9 cut(s)	54, 249, 286, 350, 359, 386, 394, 395, 428
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	4 cut(s)	228, 288, 304, 360
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	381
TaqI	TCGA	1 cut(s)	170
TasI	AATT	4 cut(s)	228, 288, 304, 360
Tru1I	TTAA	4 cut(s)	119, 140, 231, 293
Tru9I	TTAA	4 cut(s)	119, 140, 231, 293
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	3 cut(s)	176, 254, 278
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	335
Vha464I	CTTAAG	1 cut(s)	118
XapI	RAATTY	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	77
XspI	CTAG	1 cut(s)	237
Zsp2I	ATGCAT	2 cut(s)	139, 352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.